New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	4521187 =	20 (1.160)	4 (0.240)	3/298	NT	16.1%	coding (282/1122 nt)	sgcX	putative endoglucanase with Zn‑dependent exopeptidase domain
	?	CP009273	4521459 =	22 (1.300)					coding (10/1122 nt)	sgcX	putative endoglucanase with Zn‑dependent exopeptidase domain

CGCACCATAAAACCGACTTCATCCATATGCGCAAAAATCATCAGTCGCAGCGCATCGGGTTTATCACTACCGTAGCGCGCGACGACATTCCCAAGCCTGTCTCGCCAGACCTCTTTTGCCTGACGCCTGAATTCGCACAGCATGACGTCAGCGACAGCGTTTTCGTGTCCTGAAATCGCATTGTGCTGCAAAAGCGAGAACAGGGTTTCCTGCACAGAAAATGACATAGCTATCTCCGTAGACCGTAAAACAATCACTCGTTGAGCGTTTTATAGGCGCAGACTGGTCGAATAATTGTGAGAACGTTCACGTGAAAACGCGCAAAGCTGAACAAATAAAAAATTATGTGAGCCGAGTGGAATAAAAGCGCTCAACGTTTGTGAAAGTTACGGGCTGGAGAGACCAGTGATTATGGTTGAAATAATGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACG  >  CP009273/4521242‑4521733                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                                   cgcACCATAAAACCGACTTCATCCATATGCGCAAAAATCATCAGTCGCAGCGCATCGGGTTTATCACTACCGTAGCGCGCGACGACATTCCCAAGCCTGTCTCGCCAGACCTCTTTTGCCTGACGCCTGAATTCGCACAGCATGACGTCAGCGACAGCGTTTTCGTGTCCTGAAATCGCATTGTGCTGCAAAAGCGAGAACAGGGTTTCCTGCACAGAAAATGACATAGCTATCTCCGTAGAACGTAAAAAAATAACTAGTTGAGCGTTTTATAg                                                                                                                                                                                                                           >  1:115839/1‑275 (MQ=255)     ccATAAGACCGACTTCATCCATATGCGCAAAAATCATCAGTCGCAGCGCATCGGGTTTATCACTACCGTAGCGCGCGACGACATTCCCAAGCCTGTCTCGCCAGACCTCTTTTGCCTGACGCCTGAATTCGCACAGCATGACGTCAGCGACAGCGTTTTCGTGTCCTGAAATCGCATTGTGCTGCAAAAGCGAGAACAGGGTTTCCTGCACAGaaaa                                                                                                                                                                                                                                                                                 <  2:328697/217‑1 (MQ=255)         aaaaCCGACTTCATCCATATGCGCAAAAATCATCAGTCGCAGCGCATCGGGTTTATCACTACCGTAGCGCGCGACGACATTCCCAAGCCTGTCTCGCCAGACCTCTTTTGCCTGACGCCTGAATTCGCACAGCATGACGTCAGCGACAGCGTTTTCGTGTCCTGAAATCGCATTGTGCTGCAAAAGCGAGAACAGGGTTTCCTGCACAGAAAATGACATAGCTATCTCCGTAGACCGTAAAACAATCACTCGTTGAGCGTTTTATAGGCGCAGAc                                                                                                                                                                                                                   <  1:186851/275‑1 (MQ=255)                   tCATCCCTCTGCGCAAAAATCATCAGTCGCAGCGCATCGGGTTTATCACTACCGTAGCGCGCGACGACATTCCCAAGCCTGTCTCGCCAGTNCTCTTTTGCCTGACGCCTGAAATCGCACAGCATGACGTCAGCGACAGCGTTTTCGTGTTCTGAAATCGCATTGTGCTGCAAAAGCGAGAACAGGGTTTCCTGCACAGAAAATGACATAGCTATCTCCGTAGACCGTAAAACAATCACTCGTTGAGCGTTTTATAGGCACAGACTGGTCGaata                                                                                                                                                                                                         <  1:227898/275‑1 (MQ=255)                                                                              cgcgACGACATTCCCAAGCCTGTCTCGCCAGACCTCTTTTGCCTGACGCCTGAATTCGCACAGCATGACGTCAGCGACAGCGTTTTCGTGTCCTGAAATCGCATTGTGCTGCAAAAGCGAGAACAGGGTTTCCTGCACAGaaaa                                                                                                                                                                                                                                                                                 >  2:88370/1‑144 (MQ=255)                                                                                  acgacATTCCCAAGCCTGTCTCGCCAGACCTCTTTTGCCTGACGCCTGAATTCGCACAGCATGACGTCAGCGACAGCGTTTTCGTGTCCTGAAATCGCATTGTGCTGCAAAAGCGAGAACAGGGTTTCCTGCACAGAAAATGAc                                                                                                                                                                                                                                                                             <  1:88372/144‑1 (MQ=255)                                                                                                    tctcGCCAGACCTCTTTTGCCTGACGCCTGAATTCGCACAGCATGACGTCAGCGACAGCGTTTTCGTGTCCTGAAATCGCATTGTGCTGCAAAAGCGAGAACAGGGTTTCCTGCACAGAAAATGACATAGCTATCTCCGTAGACCGTAAAACAATCACTCGTTGAGCGTTATATAGGCGCAGACTGGTCGAATAATTGTGAGAACGTTCACGTGAAAACGCGCAAAGCTGAACAAATAAAAAATTATGTGAGc                                                                                                                                              >  1:210698/1‑253 (MQ=255)                                                                                                                            cGCCTGAATTCGCACAGCATGACGTCAGCGACAGCGTTTTCGTGTCCAGAAATCGCATTGTGCTGCAAAAGCGAGAACAGGGTTTCCTGCACAGAAAATGACATAGCTATCTCCGTAGACCGTAAAACAATCACTCGTTGAGCGTTTTATAGGCGCAGa                                                                                                                                                                                                                    >  1:192973/1‑159 (MQ=255)                                                                                                                                         acaGCATGACGTCTGCGACAGCGTTTTACTATCTTGACATCGCTTTATGCTGCAAAAGCGACAACAGGGTTTCCTGCACAGAAAATGAAATAGCTATCTCCGTTGACCGTAAAACAATCACTCGTTGAGCGTGTTATAGGCGCAGACTGGCCGAATCATTGTGAGAACGTTCACGTGAAAACGTGCAAAACTAAAAAAATAAAAAATTAAGTGAGCCGAATGGAAGAAAAGGGCACAACGAGTGTGAACGTTAAGGGATGGAGAAAcaatgcaat                                                                                   >  2:42139/1‑267 (MQ=255)                                                                                                                                            gCATGACGTCAGCGACAGCGTTTTCGTGTCCTGAAATCGCATTGTGCTGCAAAAGCGAGAACAGGGTTTCCTGCACAGAAAATGACATAGCTATCTCCGTAGACCGTAAAACAATCACTCGTTGAGCGTTTTATAGGCGCAGACTGGTCGAATAATTGTGAGAACGTTCACGTGAAAACGCGCAAAGCTGAACAAATAAAAAATTATGTGAGCCGAGTGGAAAAAAAGCGAACAACGTTAGTGaa                                                                                                              >  2:333982/1‑245 (MQ=255)                                                                                                                                             cATGACGTCAGCGACAGCGTTTTCGTGTCCTGAAATCGCATTGTGCTGCAAAAGCGAGAACAGGGTTTCCTGCACAGAAAATGACATAGCTATCTCCGTAGACCGTAAAACAATCACTCGTTGAGCGTTTTATAGgcg                                                                                                                                                                                                                        >  1:214758/1‑138 (MQ=255)                                                                                                                                                gACGTCAGCGACAGCGTTTTCGTGTCCTGAAATCGCATTGTGCTGCAAATGCGAGAACAGGGTTTCCTGCACAGAAAATGACATAGCTATCTCCGTAGACCGTACAACAATCACTCGTTGAGCGTTTTATAGGCGCAGACTGGTCGAATAATTGTGAGAACGTTCACGTGAAAACGCGCAAAGCTGAACAAATAAAAAATTATGTGAGCCGAGTGGAATAAAAGCGCTCAACGTTTGTGAAAGtt                                                                                                          <  1:333994/245‑1 (MQ=255)                                                                                                                                                 aCGTCAGCGACAGCGTTTTCGTGTCCTGAAATCGCATTGTGCTGCAAAAGCGAGAACAGGGTTTCCTGCACAGAAAATGACATAGCTATCTCCGTAGACCGTAAAACAATCACTCGTTGAGCGTTTTATAGGCGCAGa                                                                                                                                                                                                                    <  2:214752/138‑1 (MQ=255)                                                                                                                                                       gCGACAGCGTTTTCGTGTCCTGAAATCGCATTGTGCTGCAAAAGCGAGAACAGGGTTTCCTGCACAGAAAATGACATAGCTATCTCCGTAGACCGTaa                                                                                                                                                                                                                                                      >  1:15457/1‑98 (MQ=255)                                                                                                                                                           cAGCGTTTTCGTGTCCTGAAATCGCATTGTGCTGCAAAAGCGAGAACAGGGTTTCCTGCACAGAAAATGACATAGCTATCTCCGTAGACCGTAAAACa                                                                                                                                                                                                                                                  <  2:15457/98‑1 (MQ=255)                                                                                                                                                                gcgcaaaatagagccgtctggatttttacgctttgaacgcgtaggcggtcctgcgcagAAAATGACATAGCTATCTCCGTAGACCGTaa                                                                                                                                                                                                                                                      >  2:184592‑M2/59‑89 (MQ=255)                                                                                                                                                                gcgcaaaatagagccgtctggatttttacgctttgaacgcgtaggcggtcctgcgcagAAAATGACATAGCTATCTCCGTAGACCGTAAAACAATCACTCGTTGAGCGTTTTATAGGCGCAGACTGGTCGAATAATTGTGAGAACGTTCACGTGAAAACGCGCAAAGCt                                                                                                                                                                      >  1:131193‑M2/59‑169 (MQ=255)                                                                                                                                                                  ttCGTGTCCTGAAATCGCATTGTGCTGCAAAAGCGAGAACAGGGTTTCCTGCACAGAAAATGACATCGCTATCTCCGTAGACAGTAAAACAATCACTCGTTGAGCGTTTTATAGGCGCAGACTGGTCGAATAATTGTGAGAACGTTCACGTGAAAACGCGCAAAGCTGAACAAATAAAAAATTATGTGAGCCGAGTGGAATAAAAGCGCTCAACGTTTGTGAAAGTTACGGGCTGGAGAGACCa                                                                                         <  1:170153/244‑1 (MQ=255)                                                                                                                                                                    aaaatagagccgtctggatttttacgctttgaacgcgtaggcggtcctgcgcagAAACTGACATAGCTATCTCCGTAGACCGTAAAACa                                                                                                                                                                                                                                                  <  1:184596‑M2/35‑1 (MQ=255)                                                                                                                                                                    aaaatagagccgtctggatttttacgctttgaacgcgtaggcggtcctgcgcagAAAATGACATAGCTATCTCCGTAGACCGTAAAACAATCACTCGTTGAGCGTTTTATAGGCGCAGACTGGTCGAATAATTGTGAGAACGTTCACGTGAAAACGCGCAAAGCTGAAc                                                                                                                                                                  <  2:131191‑M2/115‑1 (MQ=255)                                                                                                                                                                           agaaacagCATTGTGCTGCAAAAGCGAGAACAGGGTTTCCTGCACAGAAAATGACATAGCTATCTCCGTAGACCGTAAAACAATCACTCGTTGAGCGTTTTATAGGCGCAGACTGGTCGAATAATTGTGAGAACGTTCACGTGAAAACGCGCAAAGCTGAACAAATAAAAAATTATGTGAGCCGAGTGGAATAAAAGCGCTCAACGTTTGTGAAAGTTACGGGCTGGAGAGACCAGTGATTATGGTTGAAATAATGAGGATGAATAAAACGCGGt                                                 <  1:71712/268‑1 (MQ=255)                                                                                                                                                                             aaaTCCCATGGTGCTGCAAAAGCGAGAACAGGGTTTCCTGCACATAAAATGACATAGCTATCTCCGTAGACCTTAAAACAAGCACTCGTTGAGCGTTTTATAGGCGCAGACTGGTCGAATAATTGTGAGAACGTTCACGTGAAAACGCGCAAAGCTGAACAAATAAAAAATTATGTGAGCCGAGTGGAATAAAAGCGCTCAACGTTTGTGAAAGTTACGGGCTGGAGAGACCAGTGATTATGGTTGAAATAATGAGGATGAATAAAACGCGGt                                                 <  2:115837/273‑1 (MQ=255)                                                                                                                                                                                  gCATTGTGCTGCAAAAGCGAGAACAGGGTTTCCTGCACAGAAAATGACATAGCTATCTCCGTAGACCGTAAAACAATCACTCGTTGAGCGt                                                                                                                                                                                                                                  >  2:257730/1‑91 (MQ=255)                                                                                                                                                                                      tgtgCTGCAAAAGCGAGAACAGGGTTTCCTGCACAGAAAATGACATAGCTATCTCCGTAGACCGTAAAACAATCACTCGTTGAGCGTTTta                                                                                                                                                                                                                              <  1:257738/91‑1 (MQ=255)                                                                                                                                                                                             cAAAATCGAGAACAGTGTTTCCTGAACAGATAATTACATAGCTATCTCCGTAAACCGTAAAACAATCACTCGTTGAGCGTTTTATAGGCGCAGACTGGTCGAATAATTGTGAGAACTTTCACGTGAAAACGCGCAAAGCTGAACAAATAAAAAATTATTTGAGCCGAGTGGAATAAAAGCGCTCAACGTTTGTGAAAGTTACGGGCTGGAGAGACCAGTGATTATGGTTGAAATAATGAGGATGAATATAACGCGGTAACTGTTATAGCACCACt                               <  1:71531/275‑1 (MQ=255)                                                                                                                                                                                              aaaaGCGAGAACAGGGTTTCCTGCACAGAAAATGACATAGCTATCTCCGTAGACCGTAAAACAATCACTCGTTGAGCGTTTTATAGGCGCAGACTGGTCGAATAATTGTGAGAACGTTCACGTGAAAACGCGCAAAGCTGAAAAAATAAAAAATTATGTGAGCCGAGTGGAATAAAAGCGCTCAACGTTTGTGAAAGTTAAGGGCCGGAGAGACCAGTGATTAGGGGTGAAATAATGAGGATGAAAAAAAAGAGGGAAATGTTATAggtgnttt                               >  2:71710/1‑267 (MQ=255)                                                                                                                                                                                                    gagaACAGGGTTTCCTGCACAGAAAATGACATAGCTATCTCCGTAGACCGTAAAACAATCACTCGTTGAGCGTTTTATAGGCGCAGa                                                                                                                                                                                                                    >  1:264178/1‑87 (MQ=255)                                                                                                                                                                                                        aCAGGGTTTCCTGCACAGAAAATGACATAGCTATCTCCGTAGACCGTAAAACAATCACTCGTTGAGCGTTTTATAGGCGCAGACTgg                                                                                                                                                                                                                <  2:264170/87‑1 (MQ=255)                                                                                                                                                                                                                          aaaaTGACATAGCTATCTCCGTAGACCGTAAAACAATCACTCGTTGAGCGTTTTATAGGCGCAGACTGGTCGAATAATTGTGAGAACGTTCACGTGAAAACGCGCAAAGCTGAACAAATAAAAAATTATGTGAGCCGAGTGGAATAAAAGCGCTCAACGTTTGTGAAAGTTACGGGCTGGAGAGACCAGTGATTATGGTTGAAATAATGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACg  >  1:86460/1‑275 (MQ=255)                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                                   CGCACCATAAAACCGACTTCATCCATATGCGCAAAAATCATCAGTCGCAGCGCATCGGGTTTATCACTACCGTAGCGCGCGACGACATTCCCAAGCCTGTCTCGCCAGACCTCTTTTGCCTGACGCCTGAATTCGCACAGCATGACGTCAGCGACAGCGTTTTCGTGTCCTGAAATCGCATTGTGCTGCAAAAGCGAGAACAGGGTTTCCTGCACAGAAAATGACATAGCTATCTCCGTAGACCGTAAAACAATCACTCGTTGAGCGTTTTATAGGCGCAGACTGGTCGAATAATTGTGAGAACGTTCACGTGAAAACGCGCAAAGCTGAACAAATAAAAAATTATGTGAGCCGAGTGGAATAAAAGCGCTCAACGTTTGTGAAAGTTACGGGCTGGAGAGACCAGTGATTATGGTTGAAATAATGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACG  >  CP009273/4521242‑4521733

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.