New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3213605	23 (1.330)	4 (0.250)	3/284	NT	14.4%	coding (753/1380 nt)	patA	putrescine:2‑oxoglutaric acid aminotransferase, PLP‑dependent
	?	CP009273	= 3213757	26 (1.610)					coding (905/1380 nt)	patA	putrescine:2‑oxoglutaric acid aminotransferase, PLP‑dependent

TTGCCACCAGCGGCGCGTTCCACGGTAAATCACTTGGCGCGCTGTCGGCCACGGCGAAATCGACCT‑TCCGCAAACCGTTTATGCCGTTACTGCCGGGCTTCCGTCATGTGCCGTTTGGCAATATCGAAGCCATGCGCACGGCTCTTAACGAGTGCAAAAAAACCGGTGATGATGTGGCTGCGGTGATCCTCGAACCGATTCAGGGTGAAGGTGGCGTAATTCTGCCGCCGCCGGGCTATCTCACCGCCGTACGTAAGCTATGCGATGAGTTCGGCGCACTGATGATCCTCGATGAAGTACAAACGGGCATGGGGCGCACGGGCAAGATGTTCGCCTGCGAGCATGAGAACGTACAGCCGGATATCCTCTGCCTTGCCAAAGCGCTCGGCGGCGGCGTGATGCCGATTGGCGCGACCATCGCCACTGAAGAGGTGTTTTCAGTTCTGTTCGACAACCCATTCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGC  >  CP009273/3213373‑3213868                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                        ttGCCACCAGCGGCGCGTTCCACGGTAAATCACTTGGCGCGCTGTCGGCCACGGCGAAATCGACCT‑TCCGCAAACCGTTTCTGCCGTTACTGCCGGGCTTCCGTCATGTGCCGTTTGGCAATATCGAAGCCATGCGCACGGCTCTTAACGAGTGCCAAAAAACCGGTGGTGATGTGGCTGCGGTGATCCTCGAACCGACTCAGGGTGAAGGGTGCGTAATTCTGCCGCCTCCGGGCTCTCTCACCGGCGGGCGTGAGGTATGCGGTGAGGTCgg                                                                                                                                                                                                                                >  2:110859/1‑274 (MQ=255) ttGCCACCAGCGGCGCGTTCCACGGTAAATCACTTGGCGCGCTGTCGGCCACGGCGAAATCGACCT‑TCCGCAAACCGTTTATGCCGTTACTGCCGGGCTTCCGTCATGTGCCGTTTGGCAATATCGAAGCCATGCGCACGGCTCTTAACGAGTGCAAAAAAACCGGTGATGATGTGGCTGCGGTGATCCTCGAACCGATTCAGGGTGAAGGTGGCGTAATTCTGCCGCCGCCGGGCTATCCCACCGCCGTACGTAAGCTAAGCGATGAGTTCgg                                                                                                                                                                                                                                >  1:150529/1‑274 (MQ=255)               gcgTTCCACGGTAAATCACTTGGCGCGCTGTCGGCCACGGCGAAATCGACCT‑TCCGCAAACCGTTTATGCCGTTACTGCCGGGCTTCCGTCATGTGCCGTTTGGCAATATCGAAGCCATGCGCACGGCTCTTAACGAGTGCAAAAAAACCGGTGATGATGTGGCTGCGGTGATCCTCGAACCGATTCAGGGTGAAGGTGGCGTAATTCTGCCGCCGCCGGGCTATCTCACCGCCGTACGTAAGCTATGCGATGAGTTCGGCGCACTGATGATCCt                                                                                                                                                                                                                 <  1:13329/275‑1 (MQ=255)                            aatctctggtcaggcTGTGGGCTATGGCGAAAT‑GACCTGTCCGCCAACCGTTTATGCCGTTACTGCCGGGTGTCCGGCATGTGCCGGTTGGCAATATCGAAGCCATGCGTACGGCTATTAACGAGTGCAAAAAAACCGGTGATGATGTGGCTGCGGTGATCCTCGAACCGATTCAGGGTGAAGGTGGCGTAATTCTGCCGCCGCCGGGCTATCTCACCGCCGTACGTAAGCTATGCGATGAGTTCGGCGCACTGATGATCCTCGATGAAGTACa                                                                                                                                                                                                     <  1:71487/261‑1 (MQ=255)                                                                     aagggagggggttatgccgtttcgGCCGGGGTTGCGTCATGGGCCGTTTGGCAATATCGAAGCCATGCGCACGGCTCTTAACGAGTGCAAAAAAACCGGTGATGATGTGGCTGCGGTGATCCTCGAACCGATTCAGGGTGAAGGTGGCGTAATTCTGCCGCCGCCGagcgctttggcaaggcagaggatagccggctgtacgttctcatgctcgcaggcgaacatcttgcccgtgcgccccatgcccgtttgtacttcatcgaggatcatcagt                                                                                                                                                             <  2:45045‑M1/263‑109 (MQ=255)                                                                      cGCAAACCGTTTATGCCGTTATTGGCGGGCTTCCGTCATGTGCCTTTTGGCAATATCGAAGCCATGGTCACGGCTCTTTACGATTGCAAAAATACCGGTGATGATGTGGCTGCTGTGATCCTCGAACCGATTCAGGGTGAAGGTGGCGTAATTCTGCCGCCGCCGGGCTATCTCACCGCCGTACGTAAGCTATGCGATGAGTTCGGCGCACTGATGATCCTCGATGAAGTACAAACGGGCATGGGGCGCACGGGCAAGATGTTCGCCTGCGAGCa                                                                                                                                                           <  1:201594/275‑1 (MQ=255)                                                                               tttATGCCGTTACTGCCGGGCTTCCGTCATGTGCCGTTTGGCAATATCGAAGCCATGCGCACGGCTCTTAACGAGTGCAAAAAAACCGGTGATGATGTGGCTGCGGTGATCCTCGAACCGATTCAGGGTGAAGGTGGCGTAATTCTGCCGCCGCCGGGCTATCTCACCGCCGTACGTAAGCTATGCGATGAGTTCGgc                                                                                                                                                                                                                               >  1:129299/1‑198 (MQ=255)                                                                                   tGCCGTTACTGCCGGGCTTCCGTCATGTGCCGTTTGGCAATATCGAAGCCATGCGCACGGCTCTTAACGAGTGCAAAAAAACCGGTGATGATGTGGCTGCGGTGATCCTCGAACCGATTCAGGGTGAAGGTGGCGTAATTCTGCCGCCGCCGGGCTATCTCACCGCCGTACGTAAGCTATGCGATGAGTTCGGCGCAc                                                                                                                                                                                                                           <  2:129297/198‑1 (MQ=255)                                                                                         tACTGCCGTGCTTCCGTCATGTGCCGTTTGGTAATATCGAAGCCAGGCGCACGGCTCTTAAAGAGTGCAAAAAAACCGGTGATGATGTGGCTGCGGTGATCCTCGAACCGATTCAGGGTGAAGGTGGCGTAATTCTGCCGCCGCCGGGCTATCTCACCGCCGTACGTAAGCTATGCGATGAGTTCGGCGCACTGATGATCCTCGATGAAGTACAAACGGGCATGGGGCGCACGGGCAAGATGTTCGCCTGCGAGCATGAGAACGTACAGCCGGat                                                                                                                                        <  1:110861/275‑1 (MQ=255)                                                                                         tACTGCCGGGCTTCCGTCATGTGCCGTTTGGCAATATCGAAGCCATGCGCACGGCTCTTAACGAGTGCAAAAAAACCGGTGATGATGTGGCTGCGGTGATCCTCGAACCGATTCAGGGTGAAGGTGGCGTAATTCTGCCGCCGCCGagcgctttggcaaggcagaggatatccggctgtacgttctcatgctcgcaggcgaacatcttgcccgtgcgccccatgcccgtttgtacttcatcgaggatcat                                                                                                                                                                 >  1:45046‑M1/1‑146 (MQ=255)                                                                                              ccGGGCTTCCGTCATGTGCCGTTTGGCAATATCGAAGCCATGCGCACGGCTCTTAACGAGTGCAAAAAAACCGGTGATGATGTGGCTGCGGTGATCCTCGAACCGATTCAGGGTGAAGGTGGCGTAATTCTGCCGCCGCCGGGATATCTCACCGCCGTACGTAAGCTATg                                                                                                                                                                                                                                            >  2:194532/1‑170 (MQ=255)                                                                                                  gCTTCCGTCATGTGCCGTTTGGCAATATCGAAGCCATGCGCACGGCTCTTAACGAGTGCAAAAAAACCGGTGATGATGTGGCTGCGGTGATCCTCGAACCGATTCAGGGTGAAGGTGGCGTAATTCTGCCGCCGCCGGGCTATCTCACCGCCGTACGTAAGCTATGCGAt                                                                                                                                                                                                                                        <  1:194536/170‑1 (MQ=255)                                                                                                                  gTTTGGCAATATCGAAGCCATGCGCACGGCTCTTAACGAGTGCAAAAAAACCGGTGATGATGTGGCTGCGGTGATCCTCGAACCGATTCAGGGTGAAGGTGGCGTAATTCTGCCGCCGCCGGGCTATCTCACCGCCGTACGTAAGCTATGCGATGAGTTCGGCGCACTGATGATCCTCGATGAAGTa                                                                                                                                                                                                       >  2:263744/1‑187 (MQ=255)                                                                                                                      ggCAATATCGAAGCCATGCGCACGGCTCTTAACGAGTGCAAAAAAACCGGTGATGATGTGGCTGCGGTGATCCTCGAACCGATTCAGGGTGAAGGTGGCGTAATTCTGCCGCCGCCGGGCTATCTCACCGCCGTACGTAAGCTATGCGATGAGTTCGGCGCACTGATGATCCTCGATGAAGTACaaa                                                                                                                                                                                                   <  1:263752/187‑1 (MQ=255)                                                                                                                                           aCGGCTCTTAACGAGTGCAAAAAAACCGGTGATGATGTGGCTGCGGTGATCCTCGAACCGATTCAGGGTGAAGGTGGCGTAATTCTGCCGCCGCCGGGCTATCTCACCGCCGTACGTAAGCTATGCGATGAGTTCGGCGCACTGATGATCCTCGATGAAGCACAAACGGGCATGGGGCGCACGGGCAAGATGTTCGCCTGCGAGCATGAGAACGTACAGCCGGATATCCTCTGCCTTGCCAAAGCGCTCGGCGGCGGCGTGATGCCGATGGgcgc                                                                                      >  1:161846/1‑275 (MQ=255)                                                                                                                                             ggCTCTTAACAAGTGCAAAAAAACCGGTGATGATGTGGCTGCGGTGATCCTCGAACCGATTCAGGGTGAAGGTGGCGTAATTCTGCCGCCGCCGGGCTATCTCACCGCCGTACGTAAGCTATGCGATGAGTTCGGCGCACTGATGATCCTCGATGAAGTACAAACGGGCATGGGGCGCACGGGCAAGATGTTCGCATGCGAGCATGAGAACGTACAGCCGGATATCctc                                                                                                                                  >  1:328710/1‑229 (MQ=255)                                                                                                                                              gCTCTTAACGAGTGCAAAAAAACCGGTGATGATGTGGCTGCGGTGATCCTCGAACCGATTCAGGGTGAAGGTGGCGTAATTCTGCCGCCGCCGGGCTATCTCACCTCCGTACGTAAGCTATGCGATGCGTTCGCCGCACTGATGAGCCTCGCTGAAGTACAAACGGGCAt                                                                                                                                                                                            >  2:115223/1‑170 (MQ=255)                                                                                                                                                  ttAACGAGTGCAAAAAAACCGGTGAGGATGTGGCTGCGGTGATCCTCGAACCGATTCAGGGTGAAGGTGGCGTAATTCTGCCGCCGCCGGGCTATCTCACCTCCGTACGTAAGCTATGCGATGAGTTCGGCGCACTGATGATCCTCGATGAAGTACAAACGGGCATgggg                                                                                                                                                                                        <  1:115225/170‑1 (MQ=255)                                                                                                                                                         gTGCAAAAAAACCGGTGATGATGTGGCTGCGGTGATCCTCGAACCGATTCAGGGTGAAGGTGGCGTAATTCTGCCGCCGCCGGGCTATCTCACCGCCGTACGTAATCTATGCGATGAGTTCGGCGCACTGATGATCCTCGATGAAGTACAAACGGGCATGGGGCGCACGGGCAAGATGTTCGCCTGCGAGCATGAGAACGTACAGCCGGATATCCTCTGCCTTGCCAAAGCGCACGGGGTAGGCGGGATGCCGATTGGCGCCACCATCGCCAc                                                                          >  2:292692/1‑273 (MQ=255)                                                                                                                                                                                         aaaaaagcaagacGATGCAGGGGGAGGGGGGGGGAATTCTGCCGCAGCCGGGCTATCTCACCGCCGTACGGAAGCTATGCGATGGTTTCGGCGGACTGATGATCCTCGATGAAGTACAAACGGGCATGGGGCGCACGGGCAAGATGTTCGCCTGCGAGCATGAGAACGTACAGGCGGATATCCTCTGCCTTGCCAAAGCGCTCGGCGGCGGCGTGATGCCGATTGGCGCGACCATCGCCACTGAAGAGGTGTTTTCAGTTCTGTTCGACAACCCa                                        <  2:163638/263‑1 (MQ=255)                                                                                                                                                                                                   aCCGATTCAGGGTGAAGGTGGCGTAATTCTGCCGCCGCCGagcgctttggcaaggcagaggatatccggctgtacgttctcatgctcgcaggcgaacatcttgcccgtgcgccccatgcccgtttgtacttcatcgaggatcat                                                                                                                                                                 >  2:80753‑M1/1‑40 (MQ=255)                                                                                                                                                                                                       aTTCAGGGTGAAGGTGGCGTAATTCTGCCGCCGCCGagcgctttggcaaggcagaggatatccggctgtacgttctcatgctcgcaggcgaacatcttgcccgtgcgccccatgcccgtttgtacttcatcgaggatcatcagt                                                                                                                                                             <  1:80755‑M1/144‑109 (MQ=255)                                                                                                                                                                                                       aTTCAGGGTGAAGGTGGCGTAATTCTGCCGCCGCCGGGCTATCTCACCGCCGTACGTAAGCTATGCGATGAGTTCGGCGCACTGATGATCCTCGATGAAGTACAAACGGGCATGGGGCGCACGGGCAAGATGTTCGCCTGCGAGCATGAGAACGTACAGCCGGATATCCTCTGCCTTGCCAAAGCGCTCGGCGGCGGCGTGATTCCGATGGGCGCGACCa                                                                                 >  1:134914/1‑220 (MQ=255)                                                                                                                                                                                                               tGAAGGTGGCGTAATTCTGCCGCCGCCGGGCTATCTCACCGCCGTACGTAAGCTATGCGATGAGTTCGGCGCACTGATGATCCTCGATGAAGTACAAACGGGCATGGGGCGCACGGGCAAGATGTTCGCCTGCGAGCATGAGAACGTACAGCCGGATATCCTCTGCCTTGCCAAAGCGCTCGGCGGCGGCGTGATGCCGATTGGCGCGACCATCGCCACTGAAGAGGTGTTTTCAGTTCTGTTCGACAACCCATTCCTCCATaccagcctctta                   >  1:163642/1‑266 (MQ=255)                                                                                                                                                                                                                       gCGTAATTCTGCCGCCGCCGGGCGATCTCACCGACGTACGTAAGCTATGCGATGAGTTCGGCGCACTGATGATCCTCGATGAAGTACAAACGGGCATGTGGCGCGCGGGCAAGATGTTCGCCTGCGAGCATGAGAACGTACAGCCGGACATCCTCTGCCTTGCCAAAGCGCCCGGCGGAGGCGTGATGACGATTGGAGCGAACATCGGCACGGAAGAGGGGGTTTAAGGTCTGGTCGACAACCCATTCCTGCAAACCCCCATANTTGGCGCCac           >  2:31734/1‑273 (MQ=255)                                                                                                                                                                                                                           aaTTCTGCCTCCGCCGGGCTATCTCACCGGCGTACGTAAGCTATGCGATGAGTTCGGCGCACTGATGATCCTCGATGAAGTACAAACGGGCATGGGGCGCACGGGCAAGATGTTCGCCTGCGAGCATGAGAACGTACAGCCGGATATCCTCTGCCTTGCCAAAGCGCTCGGCGGCGGCGTGATGCCGATTGGCGCGACCATCGCCACTGAAGAGGTGTTTTCAGTTCTGTTCGACAACCCATTCCTGCATACCACCACCTTTGGCGGCAACCCg       <  1:165730/274‑1 (MQ=255)                                                                                                                                                                                                                                tGCCGCCGCCGGGCTATCTCACCGCTGTACGTAAGCTATGCGATGAGTTCGGCGCACTGATGATCCTCGATGAAGTACAAACGGGCATGGGGCGCACGGGCAAGATGTTCGCCTGCGAGCATGAGAACGTACAGCCGGATATCCTCTGCCTTGCCAAAGCGCTCGGCGGCGGCGTGATGCCGATTGGCGCGACCATCGCCACTGAAGAGGTGTTTTCAGTTCTGTTCGACAACCCATTCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGc  <  1:10401/274‑1 (MQ=255)                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                        TTGCCACCAGCGGCGCGTTCCACGGTAAATCACTTGGCGCGCTGTCGGCCACGGCGAAATCGACCT‑TCCGCAAACCGTTTATGCCGTTACTGCCGGGCTTCCGTCATGTGCCGTTTGGCAATATCGAAGCCATGCGCACGGCTCTTAACGAGTGCAAAAAAACCGGTGATGATGTGGCTGCGGTGATCCTCGAACCGATTCAGGGTGAAGGTGGCGTAATTCTGCCGCCGCCGGGCTATCTCACCGCCGTACGTAAGCTATGCGATGAGTTCGGCGCACTGATGATCCTCGATGAAGTACAAACGGGCATGGGGCGCACGGGCAAGATGTTCGCCTGCGAGCATGAGAACGTACAGCCGGATATCCTCTGCCTTGCCAAAGCGCTCGGCGGCGGCGTGATGCCGATTGGCGCGACCATCGCCACTGAAGAGGTGTTTTCAGTTCTGTTCGACAACCCATTCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGC  >  CP009273/3213373‑3213868

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.