New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3213605	23 (1.330)	4 (0.250)	3/284	NT	14.4%	coding (753/1380 nt)	patA	putrescine:2‑oxoglutaric acid aminotransferase, PLP‑dependent
	?	CP009273	= 3213757	26 (1.610)					coding (905/1380 nt)	patA	putrescine:2‑oxoglutaric acid aminotransferase, PLP‑dependent

ACGGCTCTTAACGAGTGCAAAAAAACCGGTGATGATGTGGCTGCGGTGATCCTCGAACCGATTCAGGGTGAAGGTGGCGTAATTCTGCCGCCGCCGGGCTATCTCACCGCCGTACGTAAGCTATGCGATGAGTTCGGCGCACTGATGATCCTCGATGAAGTACAAACGGGCATGGGGCGCACGGGCAAGATGTTCGCCTGCGAGCATGAGAACGTACAGCCGGATATCCTCTGCCTTGCCAAAGCGCTCGGCGGCGGCGTGATGCCGATTGGCGCGACCATCGCCACTGAAGAGGTGTTTTCAGTTCTGTTCGACAACCCATTCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCTGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCAACTGGCGCGGGAATATCCCGATCTGGTACAGGAAGCGCGTGGTAAAGGGATGTTGATGGCGA  >  CP009273/3213510‑3214029                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                                 aCGGCTCTTAACGAGTGCAAAAAAACCGGTGATGATGTGGCTGCGGTGATCCTCGAACCGATTCAGGGTGAAGGTGGCGTAATTCTGCCGCCGCCGGGCTATCTCACCGCCGTACGTAAGCTATGCGATGAGTTCGGCGCACTGATGATCCTCGATGAAGCACAAACGGGCATGGGGCGCACGGGCAAGATGTTCGCCTGCGAGCATGAGAACGTACAGCCGGATATCCTCTGCCTTGCCAAAGCGCTCGGCGGCGGCGTGATGCCGATGGgcgc                                                                                                                                                                                                                                                       >  1:161846/1‑275 (MQ=255)               gTGCAAAAAAACCGGTGATGATGTGGCTGCGGTGATCCTCGAACCGATTCAGGGTGAAGGTGGCGTAATTCTGCCGCCGCCGGGCTATCTCACCGCCGTACGTAATCTATGCGATGAGTTCGGCGCACTGATGATCCTCGATGAAGTACAAACGGGCATGGGGCGCACGGGCAAGATGTTCGCCTGCGAGCATGAGAACGTACAGCCGGATATCCTCTGCCTTGCCAAAGCGCACGGGGTAGGCGGGATGCCGATTGGCGCCACCATCGCCAc                                                                                                                                                                                                                                           >  2:292692/1‑273 (MQ=255)                                               aaaaaagcaagacGATGCAGGGGGAGGGGGGGGGAATTCTGCCGCAGCCGGGCTATCTCACCGCCGTACGGAAGCTATGCGATGGTTTCGGCGGACTGATGATCCTCGATGAAGTACAAACGGGCATGGGGCGCACGGGCAAGATGTTCGCCTGCGAGCATGAGAACGTACAGGCGGATATCCTCTGCCTTGCCAAAGCGCTCGGCGGCGGCGTGATGCCGATTGGCGCGACCATCGCCACTGAAGAGGTGTTTTCAGTTCTGTTCGACAACCCa                                                                                                                                                                                                         <  2:163638/263‑1 (MQ=255)                                                             aTTCAGGGTGAAGGTGGCGTAATTCTGCCGCCGCCGGGCTATCTCACCGCCGTACGTAAGCTATGCGATGAGTTCGGCGCACTGATGATCCTCGATGAAGTACAAACGGGCATGGGGCGCACGGGCAAGATGTTCGCCTGCGAGCATGAGAACGTACAGCCGGATATCCTCTGCCTTGCCAAAGCGCTCGGCGGCGGCGTGATTCCGATGGGCGCGACCa                                                                                                                                                                                                                                                  >  1:134914/1‑220 (MQ=255)                                                                     tGAAGGTGGCGTAATTCTGCCGCCGCCGGGCTATCTCACCGCCGTACGTAAGCTATGCGATGAGTTCGGCGCACTGATGATCCTCGATGAAGTACAAACGGGCATGGGGCGCACGGGCAAGATGTTCGCCTGCGAGCATGAGAACGTACAGCCGGATATCCTCTGCCTTGCCAAAGCGCTCGGCGGCGGCGTGATGCCGATTGGCGCGACCATCGCCACTGAAGAGGTGTTTTCAGTTCTGTTCGACAACCCATTCCTCCATaccagcctctta                                                                                                                                                                                    >  1:163642/1‑266 (MQ=255)                                                                             gCGTAATTCTGCCGCCGCCGGGCGATCTCACCGACGTACGTAAGCTATGCGATGAGTTCGGCGCACTGATGATCCTCGATGAAGTACAAACGGGCATGTGGCGCGCGGGCAAGATGTTCGCCTGCGAGCATGAGAACGTACAGCCGGACATCCTCTGCCTTGCCAAAGCGCCCGGCGGAGGCGTGATGACGATTGGAGCGAACATCGGCACGGAAGAGGGGGTTTAAGGTCTGGTCGACAACCCATTCCTGCAAACCCCCATANTTGGCGCCac                                                                                                                                                                            >  2:31734/1‑273 (MQ=255)                                                                                 aaTTCTGCCTCCGCCGGGCTATCTCACCGGCGTACGTAAGCTATGCGATGAGTTCGGCGCACTGATGATCCTCGATGAAGTACAAACGGGCATGGGGCGCACGGGCAAGATGTTCGCCTGCGAGCATGAGAACGTACAGCCGGATATCCTCTGCCTTGCCAAAGCGCTCGGCGGCGGCGTGATGCCGATTGGCGCGACCATCGCCACTGAAGAGGTGTTTTCAGTTCTGTTCGACAACCCATTCCTGCATACCACCACCTTTGGCGGCAACCCg                                                                                                                                                                        <  1:165730/274‑1 (MQ=255)                                                                                      tGCCGCCGCCGGGCTATCTCACCGCTGTACGTAAGCTATGCGATGAGTTCGGCGCACTGATGATCCTCGATGAAGTACAAACGGGCATGGGGCGCACGGGCAAGATGTTCGCCTGCGAGCATGAGAACGTACAGCCGGATATCCTCTGCCTTGCCAAAGCGCTCGGCGGCGGCGTGATGCCGATTGGCGCGACCATCGCCACTGAAGAGGTGTTTTCAGTTCTGTTCGACAACCCATTCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGc                                                                                                                                                                   <  1:10401/274‑1 (MQ=255)                                                                                                       ctcACCGCGGTACGTGAGCTATGCGGTGAGTGCGGCGCACTGATGATCCTCGATGAAGTACAACCGGGCATGGGGCGCACGGGCAAGATGTTCGCCTGCGAGCATGGGAACGTACAGCCGGATATCCTCTGCCTTGCCAAAGCGCTCGGCGGCGGCGTGATGCCGATTGGCGCGACCATCGCCACTGAAGAGGTGTTTTCAGTTCTGTTCGACAACCCATTCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGc                                                                                                                                                 <  2:150525/275‑1 (MQ=255)                                                                                                                 tacgtaAGCTATGCGATGAGTTCGGCGCACTGATGATCCTCGATGAAGTACAAACGGGCATGGGGCGCACGGGCAAGATGTTCGCCTGCGAGCATGAGAACGTACAGCCGGATATCCTCTGCCTTGCCAAAGCGCTCGGCGGAGGCATGATGACGATTGGCGCGACCATCGCCACTGAAGAGGTGTTTTCAGTTCTGTTCGACAACCCATTCCTGCATACCACCACATTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGc                                                                                                                                                 >  1:297590/1‑265 (MQ=255)                                                                                                                        gCTATGCGATGGGTTCGGCGCGCGGATGATCCTCGATTAAGTGCAAACGGGCATGGGGCGCACGGGCAAGAGGTTCGCCTGCGAGCATGAGAACGTACAGCCGGATATCCTCTGCCTGGCCAAAGCGCTCGGCGGCGGCGTGATGCCGATTGGCGCGACCATCGCCACTGAAGAGGTGTTTTCAGTTCTGTTCGACAACCCATTCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGc                                                                                                                                <  1:92236/275‑1 (MQ=255)                                                                                                                         aggagggaggggTTCGGCGCTCTGATGAGCCTCGATGAAGTAAAAACGGGCATGGGGCGCACGGGCAAGATGTTCGCCTGCGAGCATGAGAACGTAAAGCCGGATATCCGCTGCCTTGCCAAAGCGCTCGGCGGCGGCGTGATGCAGATTGGCGCGACCATCGCCACTGAAGAGGTGTTTTCAGTTCTGTTCGACAACCCAGTCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGc                                                                                                                                <  2:61186/263‑1 (MQ=255)                                                                                                                                  gAGTTCGGCGCACTGATGATCCTCGATGAAGTACAAACGGGCATGGGGCGCACGGGCAAGATGTTCGCCTGCGAGCATGAGAACGTACAGCCGGATATCCTCTGCCTTGCCAAAGCGCTCGGCGGCGGCGTGATGCCGATTGGCGCGACCATCGCCACTGAAGAGGTGGTTTCAGTTCTGGTCGACAACCCATTCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGCCTGTGCGGGGGCGCCGGCGACCATCACTGGGTTGCTGGTGCAGaa                                                                                                                      >  2:51630/1‑275 (MQ=255)                                                                                                                                      tCGGCGCACTGATGATCCTCGATGAAGTACAAACGGGCATGGGGCGCACGGGCAAGATGTTCGCCTGCGAGCATGAGAACGTACAGCCGGATATCCTCTGCCTTGCCAAAGCGCTCGGCGGCGGCGTGATGCCGATTGGCGCGACCATCGCCACTGAAGAGGGGTTTTCAGTTCTGTTCGACAACCCATTCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTGGCGGGAGCAGAAccg                                                                                                                   >  1:61188/1‑272 (MQ=255)                                                                                                                                             aCTGATGATCCTCGATGAAGTACAAACGGGCATGGGGCGCACGGGCAAGATGTTCGCCTGCGAGCATGAGAACGTACAGCCGGCTATCCTCTGCCTTGCCAAAGCGCTcggcggcggcagaattacgccaccttcaccctgaatcggttcgaggatcaccgcagccacatcatcaccggtttttttgcactcgttaagagccgtgcgcatggcttcgatattgccaaacggcccatgacgcaaccccggccgaaacggcataaccccctccctt                                                                                                            <  2:45045‑M2/274‑167 (MQ=255)                                                                                                                                             aCTGATGATCCTCGATGAAGTACAAACGGGCATGGGGCGCACGGGCAAGATGTTCGCCTGCGAGCATGAGAACGTACAGCCGGATATCCTCTGCCTTGCCAAAGCGCTcggcggcggcagaattacgccaccttcaccctgaat                                                                                                                                                                                                                                              <  1:80755‑M2/144‑37 (MQ=255)                                                                                                                                                 atgatCCTCGATGAAGTACAAACGGGCATGGGGCGCACGGGCAAGATGTTCGCCTGCGAGCATGAGAACGTACAGCCGGATATCCTCTGCCTTGCCAAAGCGCTcggcggcggcagaattacgccaccttcaccctgaatcggttcgaggatcaccgcagccacatcatcaccggtttttttgcactcgttaagagccgtgcgcatggcttcgatattgccaaacggcacatgacggaagcccggcagta                                                                                                                                >  1:45046‑M2/1‑104 (MQ=255)                                                                                                                                                 atgatCCTCGATGAAGTACAAACGGGCATGGGGCGCACGGGCAAGATGTTCGCCTGCGAGCATGAGAACGTACAGCCGGATATCCTCTGCCTTGCCAAAGCGCTcggcggcggcagaattacgccaccttcaccctgaatcggt                                                                                                                                                                                                                                          >  2:80753‑M2/1‑104 (MQ=255)                                                                                                                                                           aTGAAGTACAAACGGGCATGGGGCGCACGGGCAAGATGTTCGCCTGCGAGCATGAGAACGTACAGCCGGATATCCTCTGCCTTGCCAAAGCGCTCGGCGGCGGCGTGATGCCGATTGGCGCGACCATCGCCACTGAAGAGGTGTTTTCAGTTCTGTTCGACAAACCATTCCTGCATACCACCACCTTTGGCGGCAACCCGCCGGCCTGTGCGGCGGCGCTGGCGACCCTCAAGGTGTTGGTGGCGCAGAACGTACCGGCTCCGGcggcgaaccaa                                                                                             >  2:310358/1‑265 (MQ=255)                                                                                                                                                              aagaaaacgggggCATGGGCCGCCCGGGCAAGATGTTCGCCCGCGGGCAGGAGAACGTACAGCCGGATAACCGCTGCCGTGCCAAAGCGCTCGGCGGCGGCGTGATGCCGATTGGCGCGACCATCGCCACTGAAGAGGTGTTTTCAGTTCTGTTCGACAACCCATTCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCTGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAgg                                                                                           <  2:317941/264‑1 (MQ=255)                                                                                                                                                                           cATGGGGCGCACGGGCAAGATGTTCGCCTGCGAGCATGAGAACGTACAGCCGGATATCCTCTGCCTTGCCAAAGCGCTCGGCGGCGGCGTGATGCCGATTGGCGCGACCATCGCCACTGAAGAGGTGTTTTCAGTTCTGTTCGACATCCCATTCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGCATGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCTGGAGCAGAACTTACCGGCCCAAGCCGAACAAAAAGGCGAAATGGTGCTg                                                                              >  1:298531/1‑274 (MQ=255)                                                                                                                                                                                  cgcACGGGCAAGATGTTCGCCTGCGAGCATGAGAACGTACAGCCGGATATCCTCTGCCTTGCCAAAGCGCTCGGCGGCGGCGTGATGCCGATTGGCGCGACCATCGCCACTGAAGAGGTGTTTTCAGTTCTGTTCGACAACCCATTCCTGCACACCACCACCTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGATGGCGACCATCAATGTGTTGCTGGAGCAGAACTTACCGGCTCAGGCTGAGCaaa                                                                                               >  1:317952/1‑250 (MQ=255)                                                                                                                                                                                                               tGAGAACGTACAGCCGGATATCCTCTGCCTTGCCAAAGCGCTCGGCGGCGGCGTGATGCCGATTGGCGCGACCATCGCCACTGAAGAGGTGTTTTCAGTTCTGTTCGACAACCCANTCCTGCATACTGCCACCTTTGGCGGCAACCCGCTGGCCTGGGCGGCGGCGCTGGCGACCATCAATGTGTTGCTGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCAACTGGCGCGGGAATATCCCGAt                                          <  1:310369/274‑1 (MQ=255)                                                                                                                                                                                                                gagaACGTACAGCCGGATATCCTCTGCCTTGCCAAAGCGCTCGGCGGCGGCGTGATGCCGATTGGCGCGACCATCGCCACTGAAGAGGTGTNTTCAGTTCTGTTCGACAACGCATTCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCTGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCAACTGGCGCGGGAATATCCCGATCt                                        <  1:253755/275‑1 (MQ=255)                                                                                                                                                                                                                                ttatCCTCTGCCTGTCCAAAGCGCTGGGCGGCGGCGTGATGCCGATTGGCGCGACCATCGCCACTGAAGAGGTGTTTTCAGTTCTGTTCGACAACCCATTCCTGCATACCACCACCTTTGGAGGCAAGCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCTGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCAACTGGCGCGGGAATATCCCGATCTGGTACAGGAAGcgcg                         <  1:292703/273‑1 (MQ=255)                                                                                                                                                                                                                                      tctGCCTTGCCAAAGCGCTCGGCGGCGGCGTGATGCCGATTGGCGCGACCATCGCCACTGAAGAGGTGTTTTCAGTTCTGTTCGACAACCNATTCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCTGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCAACTGGCGCGGGAATATCCCGATCTGGTACAGGAAGCGCGTGGTaa                   <  1:241020/274‑1 (MQ=255)                                                                                                                                                                                                                                             tGCCAAAGCGGTCGGCGGCGGCGTGATGCCGATTGGCGCGACCATCGCCACTGAag                                                                                                                                                                                                                                      >  1:334942/1‑56 (MQ=255)                                                                                                                                                                                                                                             tGCCAAAGCGCTCGGCGGCGGCGTGATGCCGATTGGCGCGACCATCGCCACTGAAGAGGTGTTTTCAGTTCTGTTCGACAACCCATTCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGCCTGTCCGGCGGCGCTGGCg                                                                                                                                                >  2:80957/1‑142 (MQ=255)                                                                                                                                                                                                                                                 aaaGCGCTCGGCGGCGGCGTGATGCCGATTGGCGCGACCATCGCCACTGAAGAGgt                                                                                                                                                                                                                                  <  2:334930/56‑1 (MQ=255)                                                                                                                                                                                                                                                 aaaGCGCTCGGCGGCGGCGTGATGCCGATTGGCGCGACCATCGCCACTGAAGAGGTGTTTTCAGTTCTGTTCGACAACCCATTCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCa                                                                                                                                            <  1:80959/142‑1 (MQ=255)                                                                                                                                                                                                                                                      gcTAGGCGGCGGCGTGATGCCGATTGGCGCGACCATCGCCACTGAAGAGGTGTTTTCAGTTCTGTTCGACAACCCATTCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCTGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCAACTGGCGCGGGAATATCCCGATCTGGTACAGGAAGCGCGTGGTAAAGGGATGTTGATGGCGa  <  1:51631/275‑1 (MQ=255)                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                                 ACGGCTCTTAACGAGTGCAAAAAAACCGGTGATGATGTGGCTGCGGTGATCCTCGAACCGATTCAGGGTGAAGGTGGCGTAATTCTGCCGCCGCCGGGCTATCTCACCGCCGTACGTAAGCTATGCGATGAGTTCGGCGCACTGATGATCCTCGATGAAGTACAAACGGGCATGGGGCGCACGGGCAAGATGTTCGCCTGCGAGCATGAGAACGTACAGCCGGATATCCTCTGCCTTGCCAAAGCGCTCGGCGGCGGCGTGATGCCGATTGGCGCGACCATCGCCACTGAAGAGGTGTTTTCAGTTCTGTTCGACAACCCATTCCTGCATACCACCACCTTTGGCGGCAACCCGCTGGCCTGTGCGGCGGCGCTGGCGACCATCAATGTGTTGCTGGAGCAGAACTTACCGGCTCAGGCTGAGCAAAAAGGCGATATGTTGCTGGACGGTTTCCGTCAACTGGCGCGGGAATATCCCGATCTGGTACAGGAAGCGCGTGGTAAAGGGATGTTGATGGCGA  >  CP009273/3213510‑3214029

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.