New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3965635 =	20 (1.160)	4 (0.250)	3/286	NT	17.9%	coding (1016/1263 nt)	wecC	UDP‑N‑acetyl‑D‑mannosaminuronic acid dehydrogenase
	?	CP009273	3965743 =	18 (1.110)					coding (1124/1263 nt)	wecC	UDP‑N‑acetyl‑D‑mannosaminuronic acid dehydrogenase

TGGCCCTGGCGTGGGCGGTCACTGCATTGCTGTTGATCCGTGGTTTATCGTGGCACAGAACCCCCAGCAGGCGCGGCTTATCCGTACCGCGCGCGAAGTGAACGATCACAAACCGTTCTGGGTTATCGATCAGGTGAAAGCGGCGGTGGCTGATTGCCTGGCGGCTACCGATAAACGCGCCAGTGAACTGAAAATCGCCTGCTTTGGTCTGGCGTTTAAACCGAATATTGATGACCTGCGCGAAAGCCCGGCGATGGAAATCGCTGAACTGATCGCCCAGTGGCATAGCGGCGAAACTCTGGTTGTTGAGCCTAACATCCACCAGTTGCCGAAAAAACTGACCGGGCTTTGTACTCTGGCGCAGCTTGACGAGGCGCTGGCAACGGCAGACGTGCTGGTGATGCTGGTCGATCATAGTCAGTTCAAAGTTATCAATGGCGACAATGTCCATCAGCAGTATGTCGTCGATGCCAAAGGAGTCTGGCGCTGATGAGAAAAATTCTGATAACAGGT  >  CP009273/3965393‑3965905                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                                               tggccctggcGTGGGCGGTCACTGCATTGCTGTTGATCCGTGGTTTATCGTGGCACAGAACCCCCAGCAGGCGCGGCTTATCCGTACCGCGCGCGAAGTGAACGATCACAAACCGTTCTGGGTTATCGATCAGGTGAAAGCGGCGGTGGCTGATTGCCTGGCGGCTACCGATAAACGAGCCAGTGAACTGAAAATCGCCTGCTTTGGTCTGGCGTTTAAACCGAATATTGATGACCTGCGCGAAAGCCCGGCGATGGAAATCGATGAACGGATCg                                                                                                                                                                                                                                                >  1:178309/1‑275 (MQ=255)                             gCTGTTGATCCGTGGTTTATCGTGGCACAGAACCCCCAGCAGGCGCGGCTTATCCGTACCGCGCGCGAAGTGAACGATCACAAACCGTTCTGGGTTATCGATCAGGTGAAAGCGGCGGTGGCTGATTGCCTGGCGGCTACCGATAAACGCGCCAGTGAACTGAAAATCGCCTGCTTTAGTCTGGCGTTTAAACCGAATATTGATGACCTGCGCGAAAGCCCGGCGAGGGAAATCGCTGAACTGATCGACCAGTGGCATACAGGCGAAACTCTGgt                                                                                                                                                                                                                    >  1:179246/1‑275 (MQ=255)                                 ttGATCCGTGGTTTATCGTGGCACAGAACCCCCAGCAGGCGCGGCTTATCCGTACCGCGCGCGAAGTGAACGATCACAAACCGTTCTGGGTTATCGATCAGGTGAAAGCGGCGGTGGCTGATTGCCTGGCGGCTACCGATAAACGCGCCAGTGCACTGACAATCGCCTGCTTTGGTCTGGCGTTTAAACCGAATATTGATGACCTGCGCGAAAGCCCGGCGATGGCAATCGCTGACCTGCTCGCCCAGTGCCATCGCGGCGCAACTCTGgatgt                                                                                                                                                                                                                 >  2:77238/1‑274 (MQ=255)                                     tCCGTGGTTTATCGTGGCACAGAACCCCCAGCAGGCGCGGCTTATCCGTACCGNGAGCGAAGTGAACGATCACGAACCGTTCTGGGTTATCGATCAGGTGAAAGCGGCGGTGGCTGATTGCCTGGCGGCTACCGATAAACGCGCCAGTGAACTGAAAATCGCCTGCTTTGGTCTGGCGTTTAAACCGAATATTGATGACCTGCGCGAAAGCCCGGCGATGGAAATCGCTGAACTGAt                                                                                                                                                                                                                                                  <  1:260601/237‑1 (MQ=255)                                          ggTTTATCGTGGCACAGAACCCCCAGCAGGGGCGGCTTATCCGTACCGCGCGCGAAGTGAACGATCACAAACCGTTCTGGGTTATCGATCAGGTGAAAGCGGCGGTGGCTGATTGCCTGGCGGCTACCGATAAACGCGCCAGTGAACTGAAAATCGCCTGCTTTGGTCTGGCGTTTAAACCGAATATTGATGACCTGCGCGAAAGCCCGGCGATGGAAATCGCTGAACTGATCGCCCAGTGGCATAGCGGCGAAACTCTGGTTGTTGAGCCTAAc                                                                                                                                                                                                       <  1:77240/275‑1 (MQ=255)                                                                          cgGCTTATCCGTACCGCGCGAGAAGTGAACGATCACAAACCGTTCTGGGTTATCGATCAGGTGAAAGCGGCGGTGGCTGATTGCCTGGCGGCTACCGATAAACGCGCCAGTGAACTGAAAATCGCCTGCTTTGGTCTGGCGTTTAAACCGAATATTGATGACCTGCGCGAAAGCCCGGCGATGGAAATCGCTGAACTGATCGCCCAGTGGCATAGCGGCGAAACTCTGGTTGTTGAGCCTAACATCCACCAGTTGCCGAAAAAACTGACCggg                                                                                                                                                                         <  1:16856/273‑1 (MQ=255)                                                                                          cgcgcgAAGTGAACGATCACAAACCGTTCTGGGTTATCGATCAGGTGAAAGCGGCGGTGGCTGATTGCCTGGCGGCTACCGATAAACGCGCCAGTGAACTGAAAATCGCCTGCTTTGGTCTGGCGTTTAAACCGAATATTGATGACCTGCGCGAAAGCCAGGCGATGGAAATCGCTGAACTGAACGCCCAGTGGCATAGCGGCGAAACTCTGATTGTTGAGCCAAACATACACAAGGTGCCGAAAAAAGTAACCGGGCTTTGtnnctgtccttg                                                                                                                                                        >  2:35429/1‑263 (MQ=255)                                                                                              cgAAGTGAACGATCACAAACCGTTCTGGGGTATCGATCAGGTGAAAGCGGCGGTGGCTGATTGCCTGGCGGCTACCGATAAACGCGCCAGTGAACTGAAAATCGCCTGCTTTGGTCTGGCGTTTAAACCGAATATTGATGACCTGCGCGAAAGCCCGGCGATGGAAATCGCTGAACTGATCGCCCAGTGGCATAGCGGCGAAACTCTGGTTGTTGAGCCTAACATCCACCAGTTGCCGAAAAAACTGAcc                                                                                                                                                                            <  1:35429/250‑1 (MQ=255)                                                                                                                              tCGATCAGGTGAAAGCGGCGGTGGCTGATTGCCTGGCGGCTACCGATAAACGCGCCAGTGAACTGAAAATCGCCTGCTGTGGTCTGGCGTTTAAACCGAATATTGATGACCTGCGCGAAAGCACGGCGATg                                                                                                                                                                                                                                                                   >  1:121778/1‑131 (MQ=255)                                                                                                                                                     gCTGATTGCCTGGCGGCTACCGATAAACGCGCCAGTGAACTGAAAATCGCCTGCTTTGGTCTGGCGTTTAAACCGAATATTGATGACCTGCGCGAAAGCCCGGCGATGGAAATCGCTGAACTGATCGCCCAGTGGCATAGCGGCGAAACTCTGGTTGTTGAGCCTAACATCCCCCAGTTGCCCAAAAAACTGACCGGGCTTTGTACTCTGGCGCAGCTTGGCGAGGCCCTGGCAACGGGCGACGGGCTTGTGGGGGTGGTCGATCTTGGTccttt                                                                                            >  2:141260/1‑271 (MQ=255)                                                                                                                                                         aTTTCCTGGCGGCTACCGATAAACGCGCCAGTGAACTGAAAATCGCCTGCTTTGGTCTGGCGTTTAAACCGAATATTGATGACCTGCGCGAAAGCCCGGCGATGGAAATCGCTGAACTGATCGCCCAGTGGCATAGCGGCGAAACTCTGGTTGTTGAGCCTAACATCCACCAGTTGCCGAAAAAACTGACCGGGCTTTGTACTCTGGCGCAGCTTGACGAGGCGCTGGCAACGGCAGACGTGCTGGTGATGCTGGt                                                                                                           <  1:141263/256‑1 (MQ=255)                                                                                                                                                                   gcaacacgtcaaaCGCGCACGTGAACCGAAATGCGGTCGCCTGGGGCTGGCGTGTAAAGCGAATCTTGATAGCGTGTGCGAAAGCCCGGCGATGGAAATCGCTGAACGGATCGCCCAGTGTCATAGCGGCGAAACTCTGGTTGTTGAGCCGAACGGCCACCAGTTGCCGAAAAAACTGAGCGGGCTTTGTACTCTGGCGCAGCTTGACGAGGCGCTGGCAACGGCAGACGTGCTGGTGATGCTGGTCGATCATAGTCAGTTCAAAGTTa                                                                                    <  2:178305/259‑1 (MQ=255)                                                                                                                                                                                      aGTGAACTGAAAATCGCCTGCTTTGGTCTGGCGTTTAAACCGAATATTGATGACCTGCGCGAAAGCCCGGCGATGGAAATCGCTGAACTGATCGCCCAGTGGCATAGCGGCGAAACTCTGGTTGTTGAg                                                                                                                                                                                                             >  2:141238/1‑129 (MQ=255)                                                                                                                                                                                          aaCTGAAAATCGCCTGCTTTGGTCTGGCGTTTAAACCGAATATTGATGACCTGCGCGAAAGCCCGGCGATGGAAATCGCTGAACTGATCGCCCAGTGGCATAGCGGCGAAACTCTGGTTGTTGAGCCTa                                                                                                                                                                                                         <  1:141241/129‑1 (MQ=255)                                                                                                                                                                                                    cGCCTGCTTTGGTCTGGCGTTTAAACCGAATATTGATGACCTGCGCGAAAGCCCGGCGATGGAAATCGCTGAACTGATCGCCCAGTGGCATAGCGGCGAAACTCTGGTTGTTGAGCCTAACATCCACCAGTTGCCGAAAAAACt                                                                                                                                                                                >  2:38426/1‑144 (MQ=255)                                                                                                                                                                                                        tGCTTTGGTCTGGCGTTTAAACCGAATATTGATGACCTGCGCGAAAGCCCGGCGATGGAAATCGCTGAACTGATCGCCCAGTGGCATAGCGGCGAAACTCTGGTTGTTGAGCCTAACATCCACCAGTTGCCGAAAAAACTGAcc                                                                                                                                                                            <  1:38426/144‑1 (MQ=255)                                                                                                                                                                                                        acgtctgccgttgccagcgcctcgtcaagctgcgccagagtacAAAGCCCGGCGATGGAAATCGCTGAACTGATc                                                                                                                                                                                                                                                 <  2:181804‑M1/32‑1 (MQ=255)                                                                                                                                                                                                        acgtctgccgttgccagcgcctcgtcaagctgcgccagagtacAAAGCCCGGCGATGGAAATCGCTGAACTAATCGCCCAGTGGCATAGCGGCGAAACTCTGGTTGTTGAGCCTAACATCCACCAGtt                                                                                                                                                                                            <  2:113831‑M1/85‑1 (MQ=255)                                                                                                                                                                                                            ctgccgttgccagcgcctcgtcaagctgcgccagagtacAAAGCCCGGCGATGGAAATCGCTGAACTGATCGccc                                                                                                                                                                                                                                             >  1:181808‑M1/40‑75 (MQ=255)                                                                                                                                                                                                            ctgccgttgccagcgcctcgtcaagctgcgccagagtacAAAGCCCGGCGATGGAAATCGCTGAACTAATCGCCCAGTGGCATAGCGGCGAAACTCTGGTTGTTGAGCCTAACATCCACCAGTTGCCg                                                                                                                                                                                        >  1:113833‑M1/40‑128 (MQ=255)                                                                                                                                                                                                                              cGAATATTGATGACCTGCGCGAAAGCCCGGCGATGGAAATCGCTGAACTGATCGCCCAGTGGCATAgcg                                                                                                                                                                                                                                 >  2:99026/1‑69 (MQ=255)                                                                                                                                                                                                                                  tatTGATGACCTGCGCGAAAGCCCGGCGATGGAAATCGCTGAACTGATCGCCCAGTGGCATAGCGGCGa                                                                                                                                                                                                                             <  1:99028/69‑1 (MQ=255)                                                                                                                                                                                                                                          aCCTGCGCGAAAGCCCGGCGATGGAAATCGCTGAACTGATCGCCCAGTGGCATAGCGGCGAAACTCTGGTTGTTGAGCCTAACATCCACCAGTTGCCGAAAAAACTGACCGGGCTTTGTACTCTGGCGCAGCTTGACGAGGCGCTGTCAACGGCAGACNTGCTGGTGATGCTGGTCGATCATAGTCAGTTCAAAGTTATCAATGGCGACAATGTCCATCAGCAGTATGTCGTCGATGCCAAAGGAGTCTGGCGCTGATGAGAAAAATTCTGATaa       >  1:310911/1‑275 (MQ=255)                                                                                                                                                                                                                                          aCCTGCGCGAAAGCCCGGCGATGGAAATCGCTGAACTGATCGCCCAGTGGCATAGCGGCGAAACTCTGGTTGTTGAGCCTAACATCCACCAGTTGCCGAAAAAACTGACCGGGCTTTGTACTCTGGCGCAGCTTGACGAGGCGCTGGCAACGGCAGACGTGCTGGTGATGCTGGTCGATCATAGTCAGTTCAAAGTTATCAATGGCGACAATGTCCATCAGCAGTATGTCGTCGATGCCAAAGGAGTCTGGCGATGATGAGAAAAATTCTGATaa       >  1:87880/1‑275 (MQ=255)                                                                                                                                                                                                                                               cgcgAAAGCCCGGCGATGGAAATCGCTGAACTGATCGCCCAGTGGCATAGCGGCGAAACTCTGGTTGTTGAGCCTAACATCCACCAGTTGCCGAAAAAACTGACCGGGCTTTGTACTCTGGCGCAGCTTGACGAGGCGCTTGAAACGGCAGACGTGCTGGTGATGCTGGTCGATCATAGTCAGTTCAAAGTTATAAATGGAGACAATGTCACTCAGCAGTATGGCGTCGATGAAAAAGGAGTGTGGCGCTTATGAGAAAANTTCTGATCACAgtc  >  2:250929/1‑273 (MQ=255)                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                                               TGGCCCTGGCGTGGGCGGTCACTGCATTGCTGTTGATCCGTGGTTTATCGTGGCACAGAACCCCCAGCAGGCGCGGCTTATCCGTACCGCGCGCGAAGTGAACGATCACAAACCGTTCTGGGTTATCGATCAGGTGAAAGCGGCGGTGGCTGATTGCCTGGCGGCTACCGATAAACGCGCCAGTGAACTGAAAATCGCCTGCTTTGGTCTGGCGTTTAAACCGAATATTGATGACCTGCGCGAAAGCCCGGCGATGGAAATCGCTGAACTGATCGCCCAGTGGCATAGCGGCGAAACTCTGGTTGTTGAGCCTAACATCCACCAGTTGCCGAAAAAACTGACCGGGCTTTGTACTCTGGCGCAGCTTGACGAGGCGCTGGCAACGGCAGACGTGCTGGTGATGCTGGTCGATCATAGTCAGTTCAAAGTTATCAATGGCGACAATGTCCATCAGCAGTATGTCGTCGATGCCAAAGGAGTCTGGCGCTGATGAGAAAAATTCTGATAACAGGT  >  CP009273/3965393‑3965905

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.