New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3965635 =	20 (1.160)	4 (0.250)	3/286	NT	17.9%	coding (1016/1263 nt)	wecC	UDP‑N‑acetyl‑D‑mannosaminuronic acid dehydrogenase
	?	CP009273	3965743 =	18 (1.110)					coding (1124/1263 nt)	wecC	UDP‑N‑acetyl‑D‑mannosaminuronic acid dehydrogenase

CGCGCGAAGTGAACGATCACAAACCGTTCTGGGTTATCGATCAGGTGAAAGCGGCGGTGGCTGATTGCCTGGCGGCTACCGATAAACGCGCCAGTGAACTGAAAATCGCCTGCTTTGGTCTGGCGTTTAAACCGAATATTGATGACCTGCGCGAAAGCCCGGCGATGGAAATCGCTGAACTGATCGCCCAGTGGCATAGCGGCGAAACTCTGGTTGTTGAGCCTAACATCCACCAGTTGCCGAAAAAACTGACCGGGCTTTGTACTCTGGCGCAGCTTGACGAGGCGCTGGCAACGGCAGACGTGCTGGTGATGCTGGTCGATCATAGTCAGTTCAAAGTTATCAATGGCGACAATGTCCATCAGCAGTATGTCGTCGATGCCAAAGGAGTCTGGCGCTGATGAGAAAAATTCTGATAACAGGTGGTGCCGGGTTTATTGGCTCGGCGCTG  >  CP009273/3965482‑3965932                                                                                                                                                                                                                                                                      |                                                                                                                                                                                              cgcgcgAAGTGAACGATCACAAACCGTTCTGGGTTATCGATCAGGTGAAAGCGGCGGTGGCTGATTGCCTGGCGGCTACCGATAAACGCGCCAGTGAACTGAAAATCGCCTGCTTTGGTCTGGCGTTTAAACCGAATATTGATGACCTGCGCGAAAGCCAGGCGATGGAAATCGCTGAACTGAACGCCCAGTGGCATAGCGGCGAAACTCTGATTGTTGAGCCAAACATACACAAGGTGCCGAAAAAAGTAACCGGGCTTTGtnnctgtccttg                                                                                                                                                                                   >  2:35429/1‑263 (MQ=255)                                                            gCTGATTGCCTGGCGGCTACCGATAAACGCGCCAGTGAACTGAAAATCGCCTGCTTTGGTCTGGCGTTTAAACCGAATATTGATGACCTGCGCGAAAGCCCGGCGATGGAAATCGCTGAACTGATCGCCCAGTGGCATAGCGGCGAAACTCTGGTTGTTGAGCCTAACATCCCCCAGTTGCCCAAAAAACTGACCGGGCTTTGTACTCTGGCGCAGCTTGGCGAGGCCCTGGCAACGGGCGACGGGCTTGTGGGGGTGGTCGATCTTGGTccttt                                                                                                                       >  2:141260/1‑271 (MQ=255)                                                                aTTTCCTGGCGGCTACCGATAAACGCGCCAGTGAACTGAAAATCGCCTGCTTTGGTCTGGCGTTTAAACCGAATATTGATGACCTGCGCGAAAGCCCGGCGATGGAAATCGCTGAACTGATCGCCCAGTGGCATAGCGGCGAAACTCTGGTTGTTGAGCCTAACATCCACCAGTTGCCGAAAAAACTGACCGGGCTTTGTACTCTGGCGCAGCTTGACGAGGCGCTGGCAACGGCAGACGTGCTGGTGATGCTGGt                                                                                                                                      <  1:141263/256‑1 (MQ=255)                                                                          gcaacacgtcaaaCGCGCACGTGAACCGAAATGCGGTCGCCTGGGGCTGGCGTGTAAAGCGAATCTTGATAGCGTGTGCGAAAGCCCGGCGATGGAAATCGCTGAACGGATCGCCCAGTGTCATAGCGGCGAAACTCTGGTTGTTGAGCCGAACGGCCACCAGTTGCCGAAAAAACTGAGCGGGCTTTGTACTCTGGCGCAGCTTGACGAGGCGCTGGCAACGGCAGACGTGCTGGTGATGCTGGTCGATCATAGTCAGTTCAAAGTTa                                                                                                               <  2:178305/259‑1 (MQ=255)                                                                                                                                                 aCCTGCGCGAAAGCCCGGCGATGGAAATCGCTGAACTGATCGCCCAGTGGCATAGCGGCGAAACTCTGGTTGTTGAGCCTAACATCCACCAGTTGCCGAAAAAACTGACCGGGCTTTGTACTCTGGCGCAGCTTGACGAGGCGCTGTCAACGGCAGACNTGCTGGTGATGCTGGTCGATCATAGTCAGTTCAAAGTTATCAATGGCGACAATGTCCATCAGCAGTATGTCGTCGATGCCAAAGGAGTCTGGCGCTGATGAGAAAAATTCTGATaa                                  >  1:310911/1‑275 (MQ=255)                                                                                                                                                 aCCTGCGCGAAAGCCCGGCGATGGAAATCGCTGAACTGATCGCCCAGTGGCATAGCGGCGAAACTCTGGTTGTTGAGCCTAACATCCACCAGTTGCCGAAAAAACTGACCGGGCTTTGTACTCTGGCGCAGCTTGACGAGGCGCTGGCAACGGCAGACGTGCTGGTGATGCTGGTCGATCATAGTCAGTTCAAAGTTATCAATGGCGACAATGTCCATCAGCAGTATGTCGTCGATGCCAAAGGAGTCTGGCGATGATGAGAAAAATTCTGATaa                                  >  1:87880/1‑275 (MQ=255)                                                                                                                                                      cgcgAAAGCCCGGCGATGGAAATCGCTGAACTGATCGCCCAGTGGCATAGCGGCGAAACTCTGGTTGTTGAGCCTAACATCCACCAGTTGCCGAAAAAACTGACCGGGCTTTGTACTCTGGCGCAGCTTGACGAGGCGCTTGAAACGGCAGACGTGCTGGTGATGCTGGTCGATCATAGTCAGTTCAAAGTTATAAATGGAGACAATGTCACTCAGCAGTATGGCGTCGATGAAAAAGGAGTGTGGCGCTTATGAGAAAANTTCTGATCACAgtc                             >  2:250929/1‑273 (MQ=255)                                                                                                                                                                CGGCGATGGAAATCGCTGAACTGATCGCCCAGTGGCATAGCGGCGAAACTCTGGTTGTTGAGCCTAACATCCACCAGTTGCCGAAAAAACTGACCGGGCTTTGTACTCTGGCGCAGCTTGACGAGGCGCTGGCAACGGCAGACGTGCTGGTGATGc                                                                                                                                          <  1:79360‑M1/156‑1 (MQ=255)                                                                                                                                                                    gATGGAAATCGCTGAACTGATCGCCCAGTGGCATAGCGGCGAAACTCTGGTTGTTGAGCCTAACATCCACCAGTTGCCGAAAAAACTGACCGGGCTTTGTACTCTGGCGCAGCTTGACGAGGCGCTGGCAACGGCAGACGTGCTGGTGATGCTGGt                                                                                                                                      <  2:79358/156‑1 (MQ=255)                                                                                                                                                                         aaaTCGCTGAACTGATCGCCCAGTGGCATAGCGGCGAAACTCTGGTTGTTGAGCCTAACATCCACCAGTTGCCGAAAAAACTGACCGGGCTNTGTACTCTGGCGCAGCTTGACGAGGCGCTGGCAACGGCAGACGTGCTGGTGATGCTGGTCGATCATAGTCAGTTCAAAGTTATCAATGGCGACAATGTCCATCAGCAGTATGTCGTCGATGCCAAAGGAGTCTGGCGCTGATGAGAAAAATTCTCATAACAGGTGGTGCCGGGTTTATTGGCt          <  1:250937/275‑1 (MQ=255)                                                                                                                                                                             cggcaactggtggatgttaggctcaacaaccagagtttcgccgctatgccactgggcgattagttcagcgatttccatcgccgggctttGTACTCTGGCGCAGCTTGACGAGGCGCTGGCAACGGCAg                                                                                                                                                         >  1:113833‑M2/90‑128 (MQ=255)                                                                                                                                                                                 aactggtggatgttaggctcaacaaccagagtttcgccgctatgccactgggcgattagttcagcgatttccatcgccgggctttGTACTCTGGCGCAGCTTGACGAGGCGCTGGCAACGGCAGACGt                                                                                                                                                     <  2:113831‑M2/43‑1 (MQ=255)                                                                                                                                                                                                   cATAGCGGCGAAACTCTGGTTGTTGAGCCTAACATCCACCAGTTGCCGAAAAAACTGACCGGGCTTTGTACTCTGGCGCAGCTTGACGAGGCGCTGGCAACGGCAGACGTGCTGGTGATGCTGGTCGATCATAGTCAGTTCAAAGTTATCAATGGCg                                                                                                      >  2:263384/1‑157 (MQ=255)                                                                                                                                                                                                      aGCGGCGAAACTCTGGTTGTTGAGCCTAACATCCACCAGTTGCCGAAAAAACTGACCGGGCTTTGTACTCTGGCGCAGCTTGACGAGGCGCTGGCAACGGCAGACGTGCTGGTGATGc                                                                                                                                          >  2:96392/1‑118 (MQ=255)                                                                                                                                                                                                       gcggcgAAACTCTGGTTGTTGAGCCTAACATCCACCAGTTGCCGAAAAAACTGACCGGGCTTTGTACTCTGGCGCAGCTTGACGAGGCGCTGGCAACGGCAGACGTGCTGGTGATGCTGGTCGATCATAGTCAGTTCAAAGTTATCAATGGCGACaa                                                                                                  <  1:263392/157‑1 (MQ=255)                                                                                                                                                                                                          gcgAAACTCTGGTTGTTGAGCCTAACATCCACCAGTTGCCGAAAAAACTGACCGGGCTTTGTACTCTGGCGCAGCTTGACGAGGCGCTGGCAACGGCAGACGTGCTGGTGATGCTGGt                                                                                                                                      <  1:96394/118‑1 (MQ=255)                                                                                                                                                                                                                       tgttgAGGCTAACTTCCACCAGTTGCCGAAAAAACTGACCGGGTNTTGTACTCNGGCGCAGCTTGACGAGGCGCTGGCAACGGCAGACGTGCTGGTGATGCTGGTCGATCATAGTCAGTTCAAAGTTATCAATGGCGACAATGTCCATCAGCAGTATGTCGTCGATGCCAAAGGAGTCTGGCGCTGATGAGAAAAATTCTGATAACAGGTCGTGCCGGGTTTATTGGCTCGGCGCTg  <  1:221178/237‑1 (MQ=255)                                                                                                                                                                                                                                  gggcgatcagttcagcgatttccatcgccgggctttGTACTCTGGCGCAGCTTGACGAGGCGCTGGCAACGGCAg                                                                                                                                                         >  1:181808‑M2/37‑75 (MQ=255)                                                                                                                                                                                                                                      gatcagttcagcgatttccatcgccgggctttGTACTCTGGCGCAGCTTGACGAGGCGCTGGCAACGGCAGACGt                                                                                                                                                     <  2:181804‑M2/43‑1 (MQ=255)                                                                                                                                                                                                                                       caccaGTTGCCGAAAAAACTGACCGGGCTTTGTACTCTGGCGCAGCTTGACGAGGCGCTGGCAACGGCAGACGTGCTGGTGATGCTGGTCGATCATAGTCAGTTCAAAGTTATCAATGGCg                                                                                                      >  2:296853/1‑121 (MQ=255)                                                                                                                                                                                                                                          caGTTGCCGAAAAAACTGACCGGGCTTTGTACTCTGGCGCAGCTTGACGAGGCGCTGGCAACGGCAGACGTGCTGGTGATGCTGGTCGATCATAGTCAGTTCAAAGTTATCAATGGCGACAATGTCCATCAGCAGTATGTCGTCGATGCCAAAGGAGTCTGGCGCTGATgag                                                >  1:101362/1‑172 (MQ=255)                                                                                                                                                                                                                                            gTTGCCGAAAAAACTGACCGGGCTTTGTACTCTGGCGCAGCTTGACGAGGCGCTGGCAACGGCAGACGTGCTGGTGATGCTGGTCGATCATAGTCAGTTCAAAGTTATCa                                                                                                            >  2:277211/1‑110 (MQ=255)                                                                                                                                                                                                                                              tGCCGAAAAAACTGACCGGGCTTTGTACTCTGGCGCAGCTTGACGAGGCGCTGGCAACGGCAGACGTGCTGGTGATGCTGGTCGATCATAGTCAGTTCAAAGTTATCAATGGCGACAATGTCCATCAGCAGTATGTCGTCGATGCCAAAGGAGTCTGGCGCTGATGAGaaaa                                            <  2:101360/172‑1 (MQ=255)                                                                                                                                                                                                                                                ccGAAAAAACTGACCGGGCTTTGTACTCTGGCGCAGCTTGACGAGGCGCTGGCAACGGCAGACGTGCTGGTGATGCTGGTCGATCATAGTCAGTTCAAAGTTATCAATgg                                                                                                        <  1:277222/110‑1 (MQ=255)                                                                                                                                                                                                                                                                      |                                                                                                                                                                                              CGCGCGAAGTGAACGATCACAAACCGTTCTGGGTTATCGATCAGGTGAAAGCGGCGGTGGCTGATTGCCTGGCGGCTACCGATAAACGCGCCAGTGAACTGAAAATCGCCTGCTTTGGTCTGGCGTTTAAACCGAATATTGATGACCTGCGCGAAAGCCCGGCGATGGAAATCGCTGAACTGATCGCCCAGTGGCATAGCGGCGAAACTCTGGTTGTTGAGCCTAACATCCACCAGTTGCCGAAAAAACTGACCGGGCTTTGTACTCTGGCGCAGCTTGACGAGGCGCTGGCAACGGCAGACGTGCTGGTGATGCTGGTCGATCATAGTCAGTTCAAAGTTATCAATGGCGACAATGTCCATCAGCAGTATGTCGTCGATGCCAAAGGAGTCTGGCGCTGATGAGAAAAATTCTGATAACAGGTGGTGCCGGGTTTATTGGCTCGGCGCTG  >  CP009273/3965482‑3965932

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.