New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3257426 =	40 (1.450)	4 (0.160)	4/252	NT	12.0%	coding (951/1332 nt)	tdcC	L‑threonine/L‑serine transporter
	?	CP009273	3257509 =	22 (0.870)					coding (868/1332 nt)	tdcC	L‑threonine/L‑serine transporter

TTGCCTTTAGCTGCCTGTTTACTCTGTCTCCGGCCAACATGGCGGAAGCCAAAGCGCAGAATATTCCAGTGCTTTCTTATCTGGCTAACCACTTTGCGTCCATGACCGGTACCAAAACAACGTTCGCGATTACACTGGAATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/3257568‑3257426 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cactggaatatTCTGCGCTTTGGCTTCCGCCATGTTGGCCGGAGACAGAGTAAACAGGCAGCTAAAGGCAAAGAACATCACCACTGCAACCATCAGCATGCTGGCACGAGAAATGATTTGGGAACATTTACGTTCGGTGAAGTCGCGACCGAAGTCTTTCTCATACTCTTCACGCTTAGAAACCACGAAGGAAGAGACGATTGGCGAGAAGTTAAAGGAGAAAACCATGATGGAAATCCCCAGCCAGACAGTGATCAGGATA  >  CP009273/3257509‑3257759                                                                                                                                                                                                                                                                                                                                                                                                            TTGCCTTTAGCTGCCTGTTTACTCTGTCTCCGGCCAACATGGCGGAAGCCAAAGCGCAGATTATTCCAGTGCTTTCTTATCTGGCTAACCACTTTGCGTCCATGACCGGTACCAAAACAACGTTCGCGATTACAC                                                                                                                                                                                                                                                                     >  2:488813/1‑135     CTTTAGCTGCCTGTTTACTCTGGCTCCGGCCAACATGGCGGAAGCCAAAGCGCAGAATATTCCAGTGCTTTCTTATCTGGCTAACCACTTTGCGTCCATGACCGGTACCAAAACAACGTTCGCGATTACACTGGA                                                                                                                                                                                                                                                                 <  1:488820/135‑1                                                                               ATCTGGCTAACCACTTTGCGTCCATGACCGGTACCAAAACAACGTTCGCGATTACACTGGAATATTCTGCGCTTTGGCTTCCGCCATGTTGGCCGGAGACAGAGTAAACAGGCAGCTAAAGGCAAAGAACATCACCACTG                                                                                                                                                                                  >  2:529461/1‑140                                                                                  TGGCTAACCACTTTGCGTCCATGACCGGTACCAAAACAACGTTCGCGATTACACTGGAATATTCTGCGCTTTGGCTTCCGCCATGTTGGCCGGAGACAGAGTAAACAGGCAGCTAAAGGCAAAGAACATCACCACTGCAACCATCAGCATGCTGGCACGAG                                                                                                                                                          >  1:541955/1‑161                                                                                   GGCTAACCACTTTGCGTCCATGACCGGTACCAAAACAACGTTCGCGATTACACTGGAATATTCTGCGCTTTGGCTTCCGCCATGTTGGCCGGAGACAGAGTAAACAGGCAGCTAAAGGCAAAGAACATCACCACTGCAAC                                                                                                                                                                              <  1:529469/140‑1                                                                                      TAACCACTTTGCGTCCATGACCGGTACCAAAACAACGTTCGCGATTACACTGGAATATTCTGCGCTTTGGCTTCCGCCATGTTGGCCGGAGACAGAGTAAACAGGCAGCTAAAGGCAAAGAACATCACCACTGCAACCATCAGCATGCTGGCACGAGAAAT                                                                                                                                                      <  2:541947/161‑1                                                                                                                            ttaagcanagACTTGAATATTCTGCGCTTTCGCTTCCCCCCTGTTGGCCGTAGACAGAGTAAACAGTCATCTACAGGCGAAGATCCTCACCTCTGCAACCATCAGGTTGCTGGCACGAGAAATGATTTTTGAACATTTACGTTCGGTGAACTCGCGACCGAAGTCTTTCTCATTCTCTTCACGCTTAGAAACCACGTAGGAAGCGACGATTCGCGAGAAGTTAAAGGAGAAAACCATGATGGAAATCCCCAGCCAGACAGTGATCAGGATA  <  2:46467/261‑1                                                                                                                                      ACTGGAATATTCTGCGCTTTGGCTTCCGCCATGTTGGCCGGAGACAGAGTAAACAGGCAGCTAAAGGCAAAGAACATCACCACTGCAACCATCAGCATGCTGGCACGAGAAATGATTTGGGAACATTTACGTTCGGTGAAGTCGCGACCGAAGTCTTTCTCATAC                                                                                                  >  1:504749/1‑165                                                                                                                                      ACTGGAATATTCTGCGCTTTGGCTTCCGCCATGTTGGCCGGAGACAGAGTAAACAGGCAGCT                                                                                                                                                                                                         <  1:441704/62‑1                                                                                                                                          GAATATTCTGCGCTTTGGCTTCCGCCATGTTGGCCGGAGACAGAGTAAACAGGCAGCTAAAGGCAAAGAACATCACCACTGCAACCATCAGCATGCTGGCACGAGAAATGATTTGGGAACATTTACGTTCGGTGAAGTCGCGACCGAAGTCTTTCTCATACTCTT                                                                                              <  2:504742/165‑1                                                                                                                                          GAATATTCTGCGCTTTGGCTTCCGCCATGTTGGCCGGAGACAGAGTAAACAGGCAGCTAAAGGCAAAGAACATCACCACTGCAACCATCAG                                                                                                                                                                        >  1:72618/1‑91                                                                                                                                              ATTCTGCGCTTTGGCTTCCGCCATGTTGGCCGGAGACAGAGTAAACAGGCAGCTAAAGGCAAAGAACATCACCACTGCAACCATCAGCATG                                                                                                                                                                    <  2:72618/91‑1                                                                                                                                                                                                                                                                                                                                                                                                            TTGCCTTTAGCTGCCTGTTTACTCTGTCTCCGGCCAACATGGCGGAAGCCAAAGCGCAGAATATTCCAGTGCTTTCTTATCTGGCTAACCACTTTGCGTCCATGACCGGTACCAAAACAACGTTCGCGATTACACTGGAATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/3257568‑3257426 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cactggaatatTCTGCGCTTTGGCTTCCGCCATGTTGGCCGGAGACAGAGTAAACAGGCAGCTAAAGGCAAAGAACATCACCACTGCAACCATCAGCATGCTGGCACGAGAAATGATTTGGGAACATTTACGTTCGGTGAAGTCGCGACCGAAGTCTTTCTCATACTCTTCACGCTTAGAAACCACGAAGGAAGAGACGATTGGCGAGAAGTTAAAGGAGAAAACCATGATGGAAATCCCCAGCCAGACAGTGATCAGGATA  >  CP009273/3257509‑3257759

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.