New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3257426 =	40 (1.450)	4 (0.160)	4/252	NT	12.0%	coding (951/1332 nt)	tdcC	L‑threonine/L‑serine transporter
	?	CP009273	3257509 =	22 (0.870)					coding (868/1332 nt)	tdcC	L‑threonine/L‑serine transporter

AAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAGCGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGTTTTGGTACCGGTCATGGACGCAAAGTGGTTAGCCAGATAAGAAAGCACTGGAATATTCTGCGCTTTGGCTTCCGCCATGTTGGCCGGAGACAGAGTAAACAGGCAGCTAAAGGCAAAGAACATCACCACTGCAACCATCAGCATGCTGGCACGAGAAATGATTTGGGAACATTTACGTTCGGTGAAGTCGCGACCGAAGTCTTTCTCATACTCTTCACGCTTAGAAACCACGAAGGAAGAGACGATTGGCGAGAAGTTAAAGGAGAAAACCATGATGGAAATCCCCAGCCAGACAGTGATCAGGATA  >  CP009273/3257268‑3257759                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                           aaGATCATGATGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCGTCCAGCGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGTTTTGGTACCGGTCATGGACGCAAAGTGGTTAGCCAGATAAGAAAGCACTGGAATATTCTGCGCTTTGGCTTCCGCCATGTTGGCCGgag                                                                                                                                                                                                                            <  1:68306/274‑1 (MQ=255)                                                                             ggCCATTCAGACCTTCCAGCGTTGCCAGAGAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGTTTTGGTACCGGTCATGGACGCAAAGTGGTTAGCCAGATAAGAAAGCACTGGAATATTCTGCGCTTTGGATTCCGNCATGTTGGCCGGAGACAGAGTAAACAGGCAGCTaaa                                                                                                                                                                                                      >  1:405523/1‑220 (MQ=255)                                                                             ggCCATTCAGACCTTCCAGCGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGTTTTGGTACCGGTCATGGACGCAAAGTGGTTAGCCAGATAAGAAAGCACTGGAATATTCTGCGCTTTGGCTTCCGCCATGTTGGCCGGAGACAGAGTAAACAGGCAGCTAAAGGCAAAGAACATCACCACTGCaa                                                                                                                                                                               >  1:2572/1‑243 (MQ=255)                                                                                            ccAGCGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGTTTTGGTACCGGTCATGGACGCAAAGTGGTTAGCCAGATAAGAAAGCACTGGAATATTCTGCGCTTTGGCTTCCGCCATGTTGGCCGGAGACAGCAGAAACAGGAAGCTAATGGCAAAGAACATCACCACTGAAACAATCAGCATGCGGCCACGAGAAATGAATTGGGAACATTTaaattca                                                                                                                                >  2:532807/1‑269 (MQ=255)                                                                                                  ttCCCAGATAGTGACAGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCACATTCCAGTGTAATCGCGAACGTTGTTTTGGTACCGGTCATGGACGCAAAGTGGTTAGCCAGATAAGAAAGCACTGGAATATTCTGCGCtt                                                                                                                                                                                                                                                    >  1:397337/1‑153 (MQ=255)                                                                                                   tCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGTTTTGGTACCGGTCATGGACGCAAAGTGGTTAGCCAGATAAGAAAGCACTGGAATATTCTGCGCTTTGGCt                                                                                                                                                                                                                                               >  2:456679/1‑157 (MQ=255)                                                                                                    cccAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGTTTTGGTACCGGTCATGGACGCAAAGTGGTTAGCCAGATAAGAAAGCACTGGAATATTCTGCGCTTTGGCTTCCGCCATGTTGGCCGGAGACAGAGTAAACAGGCAGCTAAAg                                                                                                                                                                                                     >  2:111718/1‑198 (MQ=255)                                                                                                      cAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCACATTCCAGTGTAATCGCGAACGTTGTTTTGGTACCGGTCATGGACGCAAAGTGGTTAGCCAGATAAGAAAGCACTGGAATATTCTGCGCTTTGGc                                                                                                                                                                                                                                                <  2:397331/153‑1 (MQ=255)                                                                                                       aGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGTTTTGGTACCGGTCATGGACGCAAAGTGGTTAGCCAGATAAGAAAGCACTGGAATATTCTGCGCTTTGGCTTCCg                                                                                                                                                                                                                                           <  1:456686/157‑1 (MQ=255)                                                                                                        gATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGTTTTGGTACCGGTCATGGACGCAAAGTGGTTAGCCAGATAAGAAAGCACTGGAATATTCTGCGCTTTGGCTTCCGCCATGTTGGCCGGAGACAGAGTAAACAGGCAGCTAAAGGCaa                                                                                                                                                                                                 <  1:111718/198‑1 (MQ=255)                                                                                                             tGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGTTTTGGTACCGGTCATGGACGCAAAGTGGTTAGCCAGATAAGAAAGCACTGGAATATTCTGCGCTTTGGCTTCCGCCATGTTGGCCGGAGACAGAGTAAACAGGCAGCTAAAGGCAAAGAACATc                                                                                                                                                                                         >  2:493359/1‑201 (MQ=255)                                                                                                             tGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGTTTTGGTACCGGTCATGGACGCAAAGTGGTTAGCCAGATAAGAAAGCACTGGAATATTCTGCGCTTTGGCTTCCGCCATGTTGGCCGAAGACAGAGTAAACAGGCAGNTAAAGGCAAAGAACATCACCAATGCAACCATCAGCATGCTGGCACGAGAAATGATTTGGGAACAATTACGTTAGGTGAAGTCGCGACCGa                                                                                                                >  1:429446/1‑274 (MQ=255)                                                                                                               aCCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGTTTTGGTACCGGTCATGGACGCAAAGTGGTTAGCCAGATAAGAAAGCACTGGAATATTCTGCGCTTTGGCTTCCGCCATGTTGGCCGGAGACAGAGTAAACAGGCAGCTAAAGGCAAAGAACATCACCACTGCAACCATCAGCATGCTGGCACGAGAAATGATTTGGGAACATTTACGTTCGGTGAAGTCGCGACCGAAGt                                                                                                             >  1:46467/1‑275 (MQ=255)                                                                                                                 cGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAATGTAATCGCGAACGTTGTTTTGGTACCGGTCATGGACGCAAAGTGGTTAGCCAGATAAGAAAGCACTGGAATATTCTGCGCTTTGGCTTCCGCCATGTTGGCCGGAGACAGAGTAAACAGGCAGCTAAAGGCAAAGAACATcacca                                                                                                                                                                                     <  1:493366/201‑1 (MQ=255)                                                                                                                                    aGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGTTTTGGTACCGGTCATGGACGCAAAGTGGTTAGCCAGATAAGAAAGCACTGGAATATTCTGCGCTTTGGCTTCCGCCATGtt                                                                                                                                                                                                                                    >  2:381737/1‑135 (MQ=255)                                                                                                                                        aCGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGTTTTGGTACCGGTCATGGACGCAAAGTGGTTAGCCAGATAAGAAAGCACTGGAATATTCTGCGCTTTGGCTTCCGCCATGTTGGcc                                                                                                                                                                                                                                <  1:381743/135‑1 (MQ=255)                                                                                                                                                 atgttgGAAGCCGCTTATTCCAGTTTAAACGCGAACGTTGTTTTGGTACCGGTCATGGACGCAAAGTGGTTAGCCAGCTAAGAAAGCACTGGAATATTCTGCGCTTTGGCTTCCGCCATGCTGGCCGGAGACAGAGTAAACAGGCAGCTAAAGGCAAAGAACATCACCACTGCAACCATCAGCATGCTGGCACGAGAAATGATTTGGGAACATTTACGTTCGGTGAAGTCGCGACCGAAGTCTTTCTCATACTCTTCACGCTTAGAAACCACg                                                                             <  1:532815/273‑1 (MQ=255)                                                                                                                                                                   TCCAGTGTAATCGCGAACGTTGTTTTGGTACCGGTCATGGACGCAAAGTGGTTAGCCAGATAAGAAAGCACTGGAATATTCTGCGCTTTGGCTTCCGCCATGTTGGCCGGAGCCAGAGTAAACAGGCAGCTAAAg                                                                                                                                                                                                     <  1:488820‑M1/135‑1 (MQ=255)                                                                                                                                                                       GTGTAATCGCGAACGTTGTTTTGGTACCGGTCATGGACGCAAAGTGGTTAGCCAGATAAGAAAGCACTGGAATAATCTGCGCTTTGGCTTCCGCCATGTTGGCCGGAGACAGAGTAAACAGGCAGCTAAAGGCaa                                                                                                                                                                                                 >  2:488813‑M1/1‑135 (MQ=255)                                                                                                                                                                                 atctggctaaccactttgcgtccatgaccggtaccaaaacaacgttcgcgattacactggaatatTCTGCGCTTTGGCTTCCGCCATGTTGGCCGGAGACAGAGTAAACAGGCAGCTAAAGGCAAAGAACATCACCACTg                                                                                                                                                                                  >  2:529461‑M2/66‑140 (MQ=255)                                                                                                                                                                                    tggctaaccactttgcgtccatgaccggtaccaaaacaacgttcgcgattacactggaatatTCTGCGCTTTGGCTTCCGCCATGTTGGCCGGAGACAGAGTAAACAGGCAGCTAAAGGCAAAGAACATCACCACTGCAACCATCAGCATGCTGGCACgag                                                                                                                                                          >  1:541955‑M2/63‑161 (MQ=255)                                                                                                                                                                                    cGTTGTTTTGGTACCGGTCATGGACGCAAAGTGGTTAGCCAGATAAGAAAGCACTGGAATATTCTGCGCTTTCGCTTCCGCCATGTTGGCCGGAGACAGAGTAAACAGGCAGCTAAAGGCAAAGAACATAACCACTGCAACCATCAGCATGCTGGCACGAGAAATGATTTGGGAACATTTACGTTCGGTGAAGTCGCGACCGAAGTCTTTCTCATACTCTTCACGCTTAGAAACCACGCAGGAAGAGACGATTGGCGATAAGATAAAGAAGaaa                                         >  1:202326/1‑274 (MQ=255)                                                                                                                                                                                     ggctaaccactttgcgtccatgaccggtaccaaaacaacgttcgcgattacactggaatatTCTGCGCTTTGGCTTCCGCCATGTTGGCCGGAGACAGAGTAAACAGGCAGCTAAAGGCAAAGAACATCACCACTGCAAc                                                                                                                                                                              <  1:529469‑M2/79‑1 (MQ=255)                                                                                                                                                                                        taaccactttgcgtccatgaccggtaccaaaacaacgttcgcgattacactggaatatTCTGCGCTTTGGCTTCCGCCATGTTGGCCGGAGACAGAGTAAACAGGCAGCTAAAGGCAAAGAACATCACCACTGCAACCATCAGCATGCTGGCACGAGAAAt                                                                                                                                                      <  2:541947‑M2/103‑1 (MQ=255)                                                                                                                                                                                                   ggTCATGGACGCAAAGTGGTTAGCCAGATAAGAAAGCACTGGAATATTCTGCGCTTTGGCTTCCGCCATGt                                                                                                                                                                                                                                     >  1:281812/1‑71 (MQ=255)                                                                                                                                                                                                       aTGGACGCAAAGTGGTTAGCCAGATAAGAAAGCACTGGAATATTCTGCGCTTTGGCTTCCGCCATGTTGGc                                                                                                                                                                                                                                 <  2:281809/71‑1 (MQ=255)                                                                                                                                                                                                                     gTTAGCCAGATAAGAAAGCACTGGAATATTCTGCGCTTTGGCTTCCGCCATGTTGGCCGGAGACAGAGTaaa                                                                                                                                                                                                                  >  2:28387/1‑72 (MQ=255)                                                                                                                                                                                                                         gCCAGATAAGAAAGCACTGGAATATTCTGCGCTTTGGCTTCCGCCATGTTGGCCGGAGACAGAGTAAACAgg                                                                                                                                                                                                              <  1:28387/72‑1 (MQ=255)                                                                                                                                                                                                                              ttaagcanagacttgaatatTCTGCGCTTTCGCTTCCCCCCTGTTGGCCGTAGACAGAGTAAACAGTCATCTACAGGCGAAGATCCTCACCTCTGCAACCATCAGGTTGCTGGCACGAGAAATGATTTTTGAACATTTACGTTCGGTGAACTCGCGACCGAAGTCTTTCTCATTCTCTTCACGCTTAGAAACCACGTAGGAAGCGACGATTCGCGAGAAGTTAAAGGAGAAAACCATGATGGAAATCCCCAGCCAGACAGTGATCAGGATa  <  2:46467‑M2/251‑1 (MQ=255)                                                                                                                                                                                                                                    aaGCACTGGAATATTCTGCGCTTTGGCTTCCGCCATGTTGGCCGGAGACAGAGTAAACAGGc                                                                                                                                                                                                             >  2:441697/1‑62 (MQ=255)                                                                                                                                                                                                                                        actggaatatTCTGCGCTTTGGCTTCCGCCATGTTGGCCGGAGACAGAGTAAACAGGCAGCt                                                                                                                                                                                                         <  1:441704‑M2/52‑1 (MQ=255)                                                                                                                                                                                                                                        actggaatatTCTGCGCTTTGGCTTCCGCCATGTTGGCCGGAGACAGAGTAAACAGGCAGCTAAAGGCAAAGAACATCACCACTGCAACCATCAGCATGCTGGCACGAGAAATGATTTGGGAACATTTACGTTCGGTGAAGTCGCGACCGAAGTCTTTCTCATAc                                                                                                  >  1:504749‑M2/11‑165 (MQ=255)                                                                                                                                                                                                                                            gaatatTCTGCGCTTTGGCTTCCGCCATGTTGGCCGGAGACAGAGTAAACAGGCAGCTAAAGGCAAAGAACATCACCACTGCAACCATCAg                                                                                                                                                                        >  1:72618‑M2/7‑91 (MQ=255)                                                                                                                                                                                                                                            gaatatTCTGCGCTTTGGCTTCCGCCATGTTGGCCGGAGACAGAGTAAACAGGCAGCTAAAGGCAAAGAACATCACCACTGCAACCATCAGCATGCTGGCACGAGAAATGATTTGGGAACATTTACGTTCGGTGAAGTCGCGACCGAAGTCTTTCTCATACTCtt                                                                                              <  2:504742‑M2/159‑1 (MQ=255)                                                                                                                                                                                                                                                atTCTGCGCTTTGGCTTCCGCCATGTTGGCCGGAGACAGAGTAAACAGGCAGCTAAAGGCAAAGAACATCACCACTGCAACCATCAGCATg                                                                                                                                                                    <  2:72618‑M2/89‑1 (MQ=255)                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                           AAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAGCGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGTTTTGGTACCGGTCATGGACGCAAAGTGGTTAGCCAGATAAGAAAGCACTGGAATATTCTGCGCTTTGGCTTCCGCCATGTTGGCCGGAGACAGAGTAAACAGGCAGCTAAAGGCAAAGAACATCACCACTGCAACCATCAGCATGCTGGCACGAGAAATGATTTGGGAACATTTACGTTCGGTGAAGTCGCGACCGAAGTCTTTCTCATACTCTTCACGCTTAGAAACCACGAAGGAAGAGACGATTGGCGAGAAGTTAAAGGAGAAAACCATGATGGAAATCCCCAGCCAGACAGTGATCAGGATA  >  CP009273/3257268‑3257759

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.