| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 424713 = | 29 (0.750) | 12 (0.330) | 9/294 | NT | 33.3% | coding (1611/1848 nt) | secD | SecYEG protein translocase auxillary subunit |
| ? | CP009273 | 424987 = | 21 (0.580) | coding (27/972 nt) | secF | SecYEG protein translocase auxillary subunit | |||||
TGCCACATCGCACTCCTCAGATTGACAGCTTCTTGACGCGCTTGCCGCCATATAGCAGGTTTACGATGGCACGCGTACCGACAATCGCGGTAAACATCGACGTCGCCACACCGATACCGGTAGTAATCGCGAACCCTTTAATTGCCCCGGTACCCACTGCGTACAGGATGATGACTTTAATCAGCGTGGTGATGTTCGCATCGAAGATAGAACTGAATGCGCCACGATAACCTTCATCAATTGCCTGTTGAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/424966‑424713‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgttgaacaACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCGGCATCTCTGGTCTGCTGTTAATCGCTGCTATCGTTATTATGGGCGTGCGCGGCTTTAACTGGGGGCTGGATTTCACCGGTGGTACGGTTATTGAAATTACGCTCGAAAAACCGGCTGAAATTGACGTAATGCGTGATGCATTGCAAAAAGCCGGTTTTGA > CP009273/424987‑425202 TGCCACATCGCACTCCTCAGATTGACAGCTTCTTGACGCGCTTGCCGCCATATAGCAGGTTTACGATGGCACGCGTACCGACAATCGCGGTAAACATCGACGTCGCCACACCGATACCGGTAGTAATCGCGAACCCTTTAATTGCCCCGGTACCCACTGCGTACAGGATGATGACTTTAATCAGCGTGGTGCTGTGCGCATCGAAGATAGAACTGAATGCGCCACGATAACCTTCATCAATAGCCTGTTGAACAACAAAACCACGGCCGTAAAGa > 1:724475/1‑274TGCCACATCGCACTCCTCAGATTGACAGCTTCTTGACGCGCTTGCCGCCATATAGCAGGTTTACGATGGCACGCGTACCGACAATCGCGGTAAACATCGACGTCGCCACACCGATACCGGTAGTAATCGCGAACCCTTTAATTGCCCCGGTACCCACTGCGTACAGGATGATGACTTTAATCAGCGTGGTGATGTTCGCATCGAAGATAGAACTGAATGCGCCACGATAACCTTCATCAATTGCCTGTTTAACAACTAAACCACGTCCGTAAAtt > 1:431531/1‑273 CACTCCTCAGATTGACAGCTTCTTGAAGCGCTTGGCGCCATATAGCAGGTTTACGATGGCACGCGTACCGACAATCGCGGTAAACATCGACGTCGCCACACCGATACCGGTAGTAATCGCGAACCCTTTAATTGCCCCGGTACCCACTGCGTACAGGATGATGACTTTAAGCAGCGTGGTGATNTTCGCATCNAAGATAGAACTGAATGCGCCACGATAACCTTCATCAATTGCCTGTTGAACAACTAAACCACAGACGTAAAGTCTATGACTT > 1:483058/1‑274 CGTACCGACAATCGCGGTAAACAGCGACCGCGCTACACCGATACCTGTAGTAATAGCGAACCCTTTAATGGCCCCGGCACCCATTGCGTACAGGTTGATTACTTTAATCAGCGTGGTGATGTTCGCATCGAAGATAGAACTGAATGCGCCACGATAACCTTCATCAATTGCCTG < 2:124670/174‑1 CCCCGGTACCCACTGCGTACAGGATGATGACTTTAATCAGCGTGGTGATGTTCGCATCGAAGATAGAACTGAATGCGCCACGATAACCTTCATCAATTGCCTGT > 2:400493/1‑104 GGTACCCACTGCGTACAGGATGATGACTTTAATCAGCGTGGTGATGTTCGCATCGAAGATAGAACTGAATGCGCCACGATAACCTTCATCAATTGCCTGTTGAA < 1:400500/104‑1 tagaaaggacagGGATGATGACTTTAATCACCGTGGTGAGTTTCGAATGGAAGATAGAACTGAATGCGCAACGATAACCTTCTTCAATTGCCGGTTGAACAACTAAACCCCGGCCGTAAAGTCTATGACTTTATGCGCTGGGACGACTGGGCTTTCGGCATCTCTGGTCTGCTGTTAATCGCTGCTATCGTTATTATGGGCGTGCGCGGCTTTAACTGGGGGCTGGATTTCACCGGTGGTACGGTTATTGAAATTACGCGCGAAAAACCGGCT < 2:325416/261‑1 TTAATCAGCGTGGTGATGTTCGCATCGAAGATAGAACTGAATGCGCCACGATAACCTTCATCAATTGCCTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCGGCATCTCTGGTCTGCTGTTAATCGCTGCTATCGTTATTATGGGCGTGCGCGGCTTTAACTGGGGGCTGGATTTCACCGGTGGTACGGTTATTGAAATTACGCTCGAAAAACC > 1:325422/1‑246 TTAATCAGCGTGGTGATGTTCGCATCGAAGATAGAACTGAATGCGCCACGATAACCTTCATCAATTGCCTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCGGCATCTCTGG > 2:73074/1‑144 TTAATCAGCGTGGTGATGTTCGCATCGAAGATAGAACTGAATGCGCCACGATAACCTTCATCAATTGCCTGTTGAACAACTAAACCACGGC > 1:149510/1‑91 TAATCAGCGTGGTGATGTTCGCATCGAAGATAGAACTGAATGCGCCACGATAACCTTCATCAATTGCCTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGC > 1:367306/1‑114 TCAGCGTGGTGATGTTCGCATCGAAGATAGAACTGAATGCGCCACGATAACCTTCATCAATTGCCTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCGGCATCTCTGGTCTG < 1:73075/144‑1 TCAGCGTGGTGATGTTCGCATCGAAGATAGAACTGAATGCGCCACGATAACCTTCATCAATTGCCTGTTGAACAACTAAACCACGGCCGTA < 2:149509/91‑1 CAGCGTGGTGATGTTCGCATCGAAGATAGAACTGAATGCGCCACGATAACCTTCATCAATTGCCTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGG < 2:367300/114‑1 taGCATCGAAGATAGAACTGTATTGTCCACGATAACCTTCATCAATTGCCTGTTGAACAACTAAACCACGGCCTTAAAGGTTATGACTTTATGCGCTGGGACTACTGGGCTTTCGGCATCTCTGGCCTGCTGTTAATCGCTGCTATCGTTATTATGGGCGTGCGCGGCTTTAACTGGGGGCTGGATTTCACCGGTGGTACGGTTATTGAAATTACGCTCGAAAAACCGGCTGAAATTGACGTAATGCGTGATGCATTGCAAAAAGCCGGTTTTGA < 1:347364/273‑1 TTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCGGCATCTCTGGTCTGCTGTTAATCGCTGCTA > 1:601993/1‑93 TTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCGGCATCTCTGGTCTGCTGTTAATCGCT > 2:32056/1‑89 TTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTG > 1:248540/1‑55 ACAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCGGCATCTCTGGTCTGCTGTTAATCGCTGCTATCGT < 2:601984/93‑1 ACAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCGGCATCTCTGGTCTGCTGTTAATCGCTGCTA < 1:32056/89‑1 ACAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCT < 2:248535/55‑1 TGCCACATCGCACTCCTCAGATTGACAGCTTCTTGACGCGCTTGCCGCCATATAGCAGGTTTACGATGGCACGCGTACCGACAATCGCGGTAAACATCGACGTCGCCACACCGATACCGGTAGTAATCGCGAACCCTTTAATTGCCCCGGTACCCACTGCGTACAGGATGATGACTTTAATCAGCGTGGTGATGTTCGCATCGAAGATAGAACTGAATGCGCCACGATAACCTTCATCAATTGCCTGTTGAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/424966‑424713‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgttgaacaACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCGGCATCTCTGGTCTGCTGTTAATCGCTGCTATCGTTATTATGGGCGTGCGCGGCTTTAACTGGGGGCTGGATTTCACCGGTGGTACGGTTATTGAAATTACGCTCGAAAAACCGGCTGAAATTGACGTAATGCGTGATGCATTGCAAAAAGCCGGTTTTGA > CP009273/424987‑425202 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |