New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	424713 =	29 (0.750)	12 (0.330)	9/294	NT	33.3%	coding (1611/1848 nt)	secD	SecYEG protein translocase auxillary subunit
	?	CP009273	424987 =	21 (0.580)					coding (27/972 nt)	secF	SecYEG protein translocase auxillary subunit

ATGAAGGTTATCGTGGCGCATTCAGTTCTATCTTCGATGCGAACATCACCACGCTGATTAAAGTCATCATCCTGTACGCAGTGGGTACCGGGGCAATTAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAAGAAGCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCGGCATCTCTGGTCTGCTGTTAATCGCTGCTATCGTTATTATGGGCGTGCGCGGCTTTAACTGGGGGCTGGATTT‑CACCGGTGGTACGGTTATTGAAATTACGCTCGAAAAACCGGCTGAAATTGACGTAATGCGTGATGCATTGCAAAAAGCCGGTTTTGAAGAGCCGATGCTGCAAAACTTTGGTAGCAGCCATGACATCATGG  >  CP009273/424730‑425246                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                     atgaAGGTTATCGTGGCGCATTCAGTTCTATCGTCGATGCGAACATCACCACGCTGATTAAAGTCATCATCCTGTACGCAGTGGGTACCGGGGCAATTAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAAGAAGCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTa                                                                                                                                                                                                                                                      <  1:288238/274‑1 (MQ=255)   gaAGGTTATCGTGGCGCATTCAGTTCTATCTTCGATGCGAACATCACCACGCTGATTAAAGTCATCATCCTGTACGCAGTGGGTACCGGGGCAATTAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACATGCTATATGGCGGCAAGCGCGTCAAGAAGCTGTCAATCTGAGGAGTGCGCTGGGGGACAGGAATAAAATGTTGAACAACTAAAACACGGCCGTAAAg                                                                                                                                                                                                                                                   >  1:370704/1‑275 (MQ=255)    tgccacatcgcactcctcagattgacagcttcttgacgcgcttgccgccatatagcaggtttacgatggcacgcgtaccgacaatcgcggtaaacatcgacgtcgccacaccgataccggtagtaatcgcgaaccctttaattgccccggtacccactgcgtacaggatgatgactttaatcagcgtggtgctgtgcgcatcgaagatagaactgaatgcgccacgataaccttcatcaatagcctgttgaacaACAAAACCACGGCCGTAAaga                                                                                                                                                                                                                                                  >  1:724475‑M2/255‑274 (MQ=255)    tgccacatcgcactcctcagattgacagcttcttgacgcgcttgccgccatatagcaggtttacgatggcacgcgtaccgacaatcgcggtaaacatcgacgtcgccacaccgataccggtagtaatcgcgaaccctttaattgccccggtacccactgcgtacaggatgatgactttaatcagcgtggtgatgttcgcatcgaagatagaactgaatgcgccacgataaccttcatcaattgcctgtttaacaACTAAACCACGTCCgtaaatt                                                                                                                                                                                                                                                  >  1:431531‑M2/255‑273 (MQ=255)            cGTGGCGCATTCAGTTCTATCGGCGATGCGAACATCACCACGCTGATTAAAGTCATCATCCTGTACGCAGTGGGTACCGGGGCAATTAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAAGAAGCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACt                                                                                                                                                                                                                                          <  1:376290/275‑1 (MQ=255)              cactcctcagattgacagcttcttgaagcgcttggcgccatatagcaggtttacgatggcacgcgtaccgacaatcgcggtaaacatcgacgtcgccacaccgataccggtagtaatcgcgaaccctttaattgccccggtacccactgcgtacaggatgatgactttaagcagcgtggtgatnttcgcatcnaagatagaactgaatgcgccacgataaccttcatcaattgcctgttgaacaACTAAACCACAGACGTAAAGTCTATGACtt                                                                                                                                                                                                                                         >  1:483058‑M2/245‑274 (MQ=255)                gcgcATTCAGTTCTATCTTCGATGCGAACATCACCACGCTGATTAAAGTCATCATCCTGTACGCAGTGGGTACCGGGGCAATTAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTACCATCGTAAACCTGCTACATGGCGGCAAGCGCGTCAAGAAGCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACttt                                                                                                                                                                                                                                        >  1:631553/1‑273 (MQ=255)                   ctttgaGTTCTATATTCGATGCGACAATCACCACGCTGATTAAAGTCCTCATCCTGTACGCAGGTGGTACCGGGGCAATTAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTACATGGCGGCAAGCGCGTCAAGAAGCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATgc                                                                                                                                                                                                                                    <  2:631544/269‑1 (MQ=255)                                                                          gTACGCAGTGGGTACCGGGGCAATTAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAAGAAGCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTAt                                                                                                                                                                                                                                      >  1:226905/1‑217 (MQ=255)                                                                              gCAGTGGGTACCGGGGCAATTAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAAGAAGCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATgcgc                                                                                                                                                                                                                                  <  2:226900/217‑1 (MQ=255)                                                                                                        ttgcgcgGTTTCTTCGGGTATCGGTGTGGCGACGTCGATGTTTACCGCTATTGTCGGTACGCGTGTCATCGTAGACCTGCTATATGGCGGCNAGCTCGTCAAGAAGCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCGGCATCTCTGGTCTGCTGTTAATCGCTGCTATCGTTCGTATCGGCGTGCGTGGCTTTAACTggggg                                                                                                                                              <  1:490133/272‑1 (MQ=255)                                                                                                        gTTCGCGATTACTACTGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAAGAAGCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCGGCATCTCTGGTCTGCTGTTAATCGCTGCTATCGTTATTATGGGCGTGCGCGGCTTTAACTggggg                                                                                                                                              <  1:585706/275‑1 (MQ=255)                                                                                                           cgcgATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGGCATCGTCAACCTGCTATATGGCGGCAAGCGCGTCAAGAAGCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGAATACTGGGCTTTCGGCATctct                                                                                                                                                                                                       >  1:199814/1‑215 (MQ=255)                                                                                                           cgcgATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAAGAAGCTGTCAATCTGAGGAGTGCGATGTGGCACAGGCATATACTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCGGCCTCTCTGGTCTGCTGTTAATAGCTGCTAGAGTTATTACTGGCGTGCGGGGCTTTAACAggggggtt                                                                                                                                           >  2:718574/1‑272 (MQ=255)                                                                                                               ttttctgccGGTATTGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAAGAAGCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCGGCATCTCTGGTc                                                                                                                                                                                                   <  2:199811/208‑1 (MQ=255)                                                                                                                          tATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGAAAACCTGCTATATGGCGGCAAGCGCGTCAAGAAGCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCGGCATCTCTGATCTGCTGTTACTCGCTGCTATCGCTATTATGGGCGTGCGCGGCTTTAACTGGAGGCTGGATTT‑CACCgggggt                                                                                                                           >  1:98044/1‑275 (MQ=255)                                                                                                                                                             tagaaaggacagggatgatgactttaatcaccgtggtgagtttcgaatggaagatagaactgaatgcgcaacgataaccttcttcaattgccggttgaacaACTAAACCCCGGCCGTAAAGTCTATGACTTTATGCGCTGGGACGACTGGGCTTTCGGCATCTCTGGTCTGCTGTTAATCGCTGCTATCGTTATTATGGGCGTGCGCGGCTTTAACTGGGGGCTGGATTT‑CACCGGTGGTACGGTTATTGAAATTACGCGCGAAAAACCGGCt                                                                                          <  2:325416‑M2/172‑1 (MQ=255)                                                                                                                                                                   cgagaagtagattAAAACTGCTATGTGGCGGCAAGTGCGTAAAGAAGATGGTGATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACGAAACCACGGCCGTAAAGGCGATGATGTGATGCGCTGGGACTACTGGGCTTTCGGCATCTCTGGGCTGCTGTTAATCGCTGCTATCGTTATTATGGGCGTGCGCGGCGTTAACTGGGGGCGGGATTT‑CACCGGTGGTACGGTTATTGAAATTACGCTCGAAAAACCGGCTGAAAtt                                                                                    <  2:509055/261‑1 (MQ=255)                                                                                                                                                                         ccATCGTAAACCTGCTATATGGCGCCAACCGCGTCAACACGCTGTCAATCTGAGGAGTGCGATGCGGCACAGCAACATACTGTTGAACAACTATACCACCACCGTCAAGTCCATGACTTTATCCGCTGGGACTACTGTGCTGTCGGCATCTATGTTCTTCGTTTAATCGCTGCTTTCGTACTTATGTGTGTGCGC‑GCATTTACTTTGGTCTGGGTTTACACGGGGGGTCCGGTTATTGAGATTCGCCTAGCACAACCGGCTTCACTTGACTTaa                                                                             >  2:644474/1‑274 (MQ=255)                                                                                                                                                                                    ttaatcagcgtggtgatgttcgcatcgaagatagaactgaatgcgccacgataaccttcatcaattgcctgttgaacaACTAAACCACGGc                                                                                                                                                                                                                                                          >  1:149510‑M2/79‑91 (MQ=255)                                                                                                                                                                                    ttaatcagcgtggtgatgttcgcatcgaagatagaactgaatgcgccacgataaccttcatcaattgcctgttgaacaACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCGGCATCTCTgg                                                                                                                                                                                                     >  2:73074‑M2/79‑144 (MQ=255)                                                                                                                                                                                    ttaatcagcgtggtgatgttcgcatcgaagatagaactgaatgcgccacgataaccttcatcaattgcctgttgaacaACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCGGCATCTCTGGTCTGCTGTTAATCGCTGCTATCGTTATTATGGGCGTGCGCGGCTTTAACTGGGGGCTGGATTT‑CACCGGTGGTACGGTTATTGAAATTACGCTCGAAAAAcc                                                                                              >  1:325422‑M2/79‑246 (MQ=255)                                                                                                                                                                                     taatcagcgtggtgatgttcgcatcgaagatagaactgaatgcgccacgataaccttcatcaattgcctgttgaacaACTAAACCACGGCCGTAAAGTCTATGACTTTATgcgc                                                                                                                                                                                                                                  >  1:367306‑M2/78‑114 (MQ=255)                                                                                                                                                                                      gCTATATGGCGGCAACCGCGTCATGAAGCGGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAAAAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCGGCATCTCTGGTCTGCTGTTAATCGCTGCTATCGTTATTATGGGCGTTCGCGNCTTTAACTTGTGGCTGGCTTT‑CACCGGTGGTACGGTTATTGAAATTACGCTCGAAAAACCGGCTGa                                                                                        >  1:509062/1‑250 (MQ=255)                                                                                                                                                                                       cTATATGGCGGCAAGCGCGTCAAGAAGCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGc                                                                                                                                                                                                                                                          >  1:440822/1‑88 (MQ=255)                                                                                                                                                                                        tcagcgtggtgatgttcgcatcgaagatagaactgaatgcgccacgataaccttcatcaattgcctgttgaacaACTAAACCACGGCCGTa                                                                                                                                                                                                                                                      <  2:149509‑M2/17‑1 (MQ=255)                                                                                                                                                                                        tcagcgtggtgatgttcgcatcgaagatagaactgaatgcgccacgataaccttcatcaattgcctgttgaacaACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCGGCATCTCTGGTctg                                                                                                                                                                                                 <  1:73075‑M2/70‑1 (MQ=255)                                                                                                                                                                                         cagcgtggtgatgttcgcatcgaagatagaactgaatgcgccacgataaccttcatcaattgcctgttgaacaACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTggg                                                                                                                                                                                                                              <  2:367300‑M2/41‑1 (MQ=255)                                                                                                                                                                                           atGGCGGCAAGCGCGTCAAGAAGCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTa                                                                                                                                                                                                                                                      <  2:440815/88‑1 (MQ=255)                                                                                                                                                                                                       tagcatcgaagatagaactgtattgtccacgataaccttcatcaattgcctgttgaacaACTAAACCACGGCCTTAAAGGTTATGACTTTATGCGCTGGGACTACTGGGCTTTCGGCATCTCTGGCCTGCTGTTAATCGCTGCTATCGTTATTATGGGCGTGCGCGGCTTTAACTGGGGGCTGGATTT‑CACCGGTGGTACGGTTATTGAAATTACGCTCGAAAAACCGGCTGAAATTGACGTAATGCGTGATGCATTGCAAAAAGCCGGTTTTGa                                              <  1:347364‑M2/216‑1 (MQ=255)                                                                                                                                                                                                                                 gTGCGATGTGGCACAGGAATATACTGTTGAACAACTaa                                                                                                                                                                                                                                                                  >  2:264507/1‑38 (MQ=255)                                                                                                                                                                                                                                     gATGTGGCACAGGAATATACTGTTGAACAACTAAACCa                                                                                                                                                                                                                                                              <  1:264512/38‑1 (MQ=255)                                                                                                                                                                                                                                       tgtgGCACAGGAATAGACTGTTGAACAATGAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCGGCATCTCTGGTCTGCTGTTAATCGCTGCTATCGTTATTATGGGCGTGCGCGGCTTTAACTg                                                                                                                                                  >  1:505001/1‑144 (MQ=255)                                                                                                                                                                                                                                           gCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCGGCATCTCTGGTCTGCTGTTAATCGCTGCTATCGTTATTATGGGCGTGCGCGGCTTTAACTggggg                                                                                                                                              <  2:504994/144‑1 (MQ=255)                                                                                                                                                                                                                                                   atatACTGTTGAACAACTACACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCGGCATCTCTGGTCTGCTGTTAATCGCTGCTATCGTTATTATGGGCGTGCGCGGCTTTAACTGGGGGCTGGATTT‑CACCggt                                                                                                                              >  2:513289/1‑151 (MQ=255)                                                                                                                                                                                                                                                      taCTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCGGCATCTCTGGTCTGCTGTTAATCGCTGCTATCGTTATTATGGGCGTGCGCGGCTTTAACTGGGGGCTGGATTT‑CACCGGTGGTACGGTTATTGAAATTACGCTCGAAAATCCGGCTGAAATTGACGTAATGCGTGATGCATTGCAAAAAGCCGGTTTTGAAGAGCCGATGCTGCAAAACTTTGGTAGCAGCCATGAAATCATgg  >  1:407449/1‑272 (MQ=255)                                                                                                                                                                                                                                                       aCTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCGGCATCTCTGGTCTGCTGTTAATCGCTGCTATCGTTATTATGGGCGTGCGCGGCTTTAACTGGGGGCTGGATTT‑CACCGGTGGTa                                                                                                                          <  1:513296/151‑1 (MQ=255)                                                                                                                                                                                                                                                           ttgaacaACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTg                                                                                                                                                                                                                       >  1:248540‑M2/8‑55 (MQ=255)                                                                                                                                                                                                                                                           ttgaacaACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCGGCATCTCTGGTCTGCTGTTAATCgct                                                                                                                                                                                     >  2:32056‑M2/8‑89 (MQ=255)                                                                                                                                                                                                                                                           ttgaacaACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCGGCATCTCTGGTCTGCTGTTAATCGCTGCTa                                                                                                                                                                                 >  1:601993‑M2/8‑93 (MQ=255)                                                                                                                                                                                                                                                               acaACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCt                                                                                                                                                                                                                   <  2:248535‑M2/52‑1 (MQ=255)                                                                                                                                                                                                                                                               acaACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCGGCATCTCTGGTCTGCTGTTAATCGCTGCTa                                                                                                                                                                                 <  1:32056‑M2/86‑1 (MQ=255)                                                                                                                                                                                                                                                               acaACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCGGCATCTCTGGTCTGCTGTTAATCGCTGCTATCGt                                                                                                                                                                             <  2:601984‑M2/90‑1 (MQ=255)                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                     ATGAAGGTTATCGTGGCGCATTCAGTTCTATCTTCGATGCGAACATCACCACGCTGATTAAAGTCATCATCCTGTACGCAGTGGGTACCGGGGCAATTAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGCGACGTCGATGTTTACCGCGATTGTCGGTACGCGTGCCATCGTAAACCTGCTATATGGCGGCAAGCGCGTCAAGAAGCTGTCAATCTGAGGAGTGCGATGTGGCACAGGAATATACTGTTGAACAACTAAACCACGGCCGTAAAGTCTATGACTTTATGCGCTGGGACTACTGGGCTTTCGGCATCTCTGGTCTGCTGTTAATCGCTGCTATCGTTATTATGGGCGTGCGCGGCTTTAACTGGGGGCTGGATTT‑CACCGGTGGTACGGTTATTGAAATTACGCTCGAAAAACCGGCTGAAATTGACGTAATGCGTGATGCATTGCAAAAAGCCGGTTTTGAAGAGCCGATGCTGCAAAACTTTGGTAGCAGCCATGACATCATGG  >  CP009273/424730‑425246

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.