New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 2193886 =19 (0.490)14 (0.380) 6/300 NT 42.3% coding (129/3633 nt) yehI DUF4132 domain‑containing protein
?CP009273 2193944 = 20 (0.540)coding (187/3633 nt) yehI DUF4132 domain‑containing protein

TTCTTCTCAGCTTTTTGTAGCAATTCATCACCCAATGTCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/2193927‑2193886
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtctggCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAA  >  CP009273/2193944‑2194015
                                                                                                                  
TTCTTCTCAGCTTTTTGTAGCAATTCATCACCCAATGTCTGG‑‑‑‑ATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACA      >  1:405464/1‑106
  CTTCTCAGCTTTTTGTAGCAATTCATCACCCAATGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACA      >  1:588860/1‑108
  CTTCTCAGCTTTTTGTAGCAATTCATCACCCAATGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAAC       >  2:114843/1‑107
  CTTCTCAGCTTTTTGTAGCAATTCATCACCCAATGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGAT               >  1:694174/1‑99
  CTTCTCAGCTTTTTGTAGCAATTCATCACCCAATGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGAT               >  2:409581/1‑99
  CTTCTCAGCTTTTTGTAGCAATTCATCACCCAATGTCTGGCGTTATGAGAATTTT                                                           >  2:214055/1‑55
  CTTCTCAGCTTTTTGTAGCAATTCATCACCCAATGTCTGGCGTTATGAGAATTTT                                                           >  2:508551/1‑55
    TCTCAGCTTTTTGTAGCAATTCATCACCCAATGTCTGG‑‑‑‑ATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAA  <  2:405457/106‑1
      TCAGCTTTTTGTAGCAATTCATCACCCAATGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAA   <  1:114844/107‑1
      TCAGCTTTTTGTAGCAATTCATCACCCAATGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGC           <  1:409588/99‑1
      TCAGCTTTTTGTAGCAATTCATCACCCAATGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGC           <  2:694165/99‑1
      TCAGCTTTTTGTAGCAATTCATCACCCAATGTCTGGCGTTATGAGAATTTTTCAC                                                       <  1:214059/55‑1
      TCAGCTTTTTGTAGCAATTCATCACCCAATCTCTGGCGTTATGAGAATTTTTCAC                                                       <  1:508558/55‑1
      TCAGCTTTGTGTAGCAATTCATCACCCAATGTCTGGCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAA  <  2:588851/108‑1
                                                                                                                  
TTCTTCTCAGCTTTTTGTAGCAATTCATCACCCAATGTCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/2193927‑2193886
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtctggCGTTATGAGAATTTTTCACTGGAGTGGCAGTCCGCCATCACGCAGGCCATCAACTTGATCGGCGAACACAAA  >  CP009273/2193944‑2194015

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.