New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2697468	8 (0.210)	8 (0.230)	4/288	NT	36.1%	intergenic (‑46/+226)	rnc/lepB	RNase III/leader peptidase (signal peptidase I)
	?	CP009273	= 2697536	21 (0.600)					intergenic (‑114/+158)	rnc/lepB	RNase III/leader peptidase (signal peptidase I)

ATTGCCACGGACCAGCGTGGCGCGCATCCGGCTCATATCGCCTTCATCCACACGAGGGAAACGGTGATAAAGCGCATTGGCGATAACGTAGCTCAGAATAGAGTCGCCTAAAAATTCTAAACGCTCGTTATGTTTACTGCTGGCACTACGATGAGTTAATGCCTGCTGCAACAGTTCCTGATGATTAAAAGTGTAGCCCAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/2697186‑2697468 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcacacgaaacagCGTTGGTCCCCATATACCGGTAAACTGAAACTGCAGCGAAGCAGTTAGCAGAACCATGTATATCAGGTCTGTTTCGTGTGCTGAATTGTTGACGCATTTATTTATTGGTATCGCATGAACCCCATCGTAATTAATCGGCTTCAACGGAAGCTGGGCTACACTTTTAATCATCAGGAACTGTTGCAGCAGGCATTAACTCA  <  CP009273/2697536‑2697337                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ATTGCCACGGACCAGCGTTGCGCGCATCCGGCTCATATCGCCTTCATCCACACGAGGGAAACGGTGATAAAGCGCATTGGCGATAACGTAGCGCAGATTAGAGTCGCCTAAAAATTCTAAACGCTCGTTATGTTTACTGCTGGCACTACGATGAGTTAATGCCTGCTGCAACAGTTCCTGATGATTAAAAGTGTAGCCCAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACA                                                                                                                                                                                                                  <  1:378044/275‑1                         CATCCGGCTCATATAGCCTTCATCAACACAAGGGAAACGGTGATAAAGCGCATTGGCGATAACGTAGCTCAGAATAGAGTCGCCTAAAAGTTNTAAACGCTCGCTATGTTTACTGCTGGCACTACGATGAGTTAATGCCTGCTGCAACAGTTCCTGATGATTAAAAGTGTAGCCCAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACA                                                                                                                                                                                                                  <  1:646434/251‑1                                                                   gacaggctCATTGGTGATAACGTAGCTCAGAATAGAGTCGCCTAAAAATTCTAAACGCTCGTTATGTTTACTGCTGGCACTACGATGAGTNAATGCCTGCTGCAACAGTTCCTGATGATTAAAAGTGTTGCCCAGCTTCCGTTGGAGCCGATTAA‑TACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAGCGTTGGTCCCCATATACCGGTAAACTGAGACTGCAGCGAAGCTGTTAGCAGAACCATG                                                                                                                                                <  1:500834/266‑1                                                                   agAAAGCGCATTGGCGATAACGTAGATAAGAATAGAGTCGCCTAAAAATTCTAAACGCTCGTTATGTTTACTGCTGGCACTACGATGAGTTNATGCCTGCTGCAACAGTTCCTGATGATTAAAAGTGTAGCCCAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAGCGTTGGTCCCCATATACCGGTAAACTGAAACTGCAGCGAAGCAGTTAGCAGAACCATG                                                                                                                                                <  1:533958/273‑1                                                                                                                                         CTGCTGGCACTACGATGAGTTAATGCCTGCTGCAACAGTTCCTGATGATTAAAAGTGTAGCCCAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAG                                                                                                                                                                                                                      >  2:51453/1‑135                                                                                                                                             TGGCACTACGATGAGTTAATGCCTGCTGCAACAGTTCCTGATGATTAAAAGTGTAGCCCAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAGCGTTGGTCACCATATACCGGTAAACTGAAACTGCAGCGAAGCAGTTAGCAGAAC                                                                                                                                                    >  2:486139/1‑197                                                                                                                                             TGGCACTACGATGAGTTAATGCCTGCTGCAACAGTTCCTGATGATTAAAAGTGTAGCCCAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACA                                                                                                                                                                                                                  <  1:51453/135‑1                                                                                                                                                 ACTACGATGAGTTNATGCCTGCTGCAACAGTTCCTGATGATTAAAAGTGTAGCCCAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAGCGTTGGTCCCCATATACCGGTAAACTGACGCTGTAGTGAAGCTGTTAGCAGAACCATG                                                                                                                                                <  1:486146/197‑1                                                                                                                                                                    TGCTGCAACAGTTCCTGATGATTAAAAGTGTAGCCCAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACAC                                                                                                                                                                                                                 >  1:552004/1‑113                                                                                                                                                                        GCAACAGTTCCTGATGATTAAAAGTGTAGCCCAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAA                                                                                                                                                                                                             <  2:551995/113‑1                                                                                                                                                                              GTTCCTGATGATTAAAAGTGTAGCCCAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAGCGTTGGTCCCCATATACCGGTAAACTGAAACTGCAGCGAAGCAGTTAGCAGAAC                                                                                                                                                    >  2:554538/1‑164                                                                                                                                                                                  CTGATGATTAAAAGTGTAGCCCAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAGCGTTGGTCCCCATATACCGGTAAACTGAAACTGCAGCGAAGCAGTTAGCAGAACCATG                                                                                                                                                <  1:554547/164‑1                                                                                                                                                                                                                                        GTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAG                                                                                                                                                                                                          >  1:117482/1‑52                                                                                                                                                                                                                                            ATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAGCGTT                                                                                                                                                                                                      <  2:117481/52‑1                                                                                                                                                                                                                                                      AATAAATAAATGCGTCAACAATTCAGCACACGAAACAGCGTTGGTCCCCATATACCGGTAAACTGAAACTGCAGCGAAGCAGTTAGCAGAAC                                                                                                                                                    >  1:558905/1‑92                                                                                                                                                                                                                                                          AATAAATGCGTCAACAATTCAGCACACGAAACAGCGTTGGTCCCCATATACCGGTAAACTGAAACTGCAGCGAAGCAGTTAGCAGAACCATG                                                                                                                                                <  2:558896/92‑1                                                                                                                                                                                                                                                                                          AGCGTTGGTCCCCATATACCGGTAAACTGAAACTGCAGCGAAGCAGTTAGCAGAACCATGTATATCAGGTCTGTTTCGTGTGCTGAATTGTTGACGCATTTATTTATTGGTATCGCATGAACCCCATCGTAATTAATCGGCTTCAACGGAAGCTGGGCTACACTTTTAATCATCAGGAACTGTTGCAGCAGGCATTAACTCA  >  1:399880/1‑202                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ATTGCCACGGACCAGCGTGGCGCGCATCCGGCTCATATCGCCTTCATCCACACGAGGGAAACGGTGATAAAGCGCATTGGCGATAACGTAGCTCAGAATAGAGTCGCCTAAAAATTCTAAACGCTCGTTATGTTTACTGCTGGCACTACGATGAGTTAATGCCTGCTGCAACAGTTCCTGATGATTAAAAGTGTAGCCCAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/2697186‑2697468 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcacacgaaacagCGTTGGTCCCCATATACCGGTAAACTGAAACTGCAGCGAAGCAGTTAGCAGAACCATGTATATCAGGTCTGTTTCGTGTGCTGAATTGTTGACGCATTTATTTATTGGTATCGCATGAACCCCATCGTAATTAATCGGCTTCAACGGAAGCTGGGCTACACTTTTAATCATCAGGAACTGTTGCAGCAGGCATTAACTCA  <  CP009273/2697536‑2697337

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.