New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2697468	8 (0.210)	8 (0.230)	4/288	NT	36.1%	intergenic (‑46/+226)	rnc/lepB	RNase III/leader peptidase (signal peptidase I)
	?	CP009273	= 2697536	21 (0.600)					intergenic (‑114/+158)	rnc/lepB	RNase III/leader peptidase (signal peptidase I)

TGAGTTAATGCCTGCTGCAACAGTTCCTGATGATTAAAAGTGTAGCCCAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGCTTATCGAAGCTCATCCAGATAGCCGTTGCCCGACCGACCAGATTCGCTTCC  >  CP009273/2697337‑2697802                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                           tGAGTTAATGCCTGCTGCAACAGTTCCTGATGATTAAAAGTGTAGCCCAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGct                                                                                                                                                                                                                                                                          >  1:399880‑M2/1‑200 (MQ=255)                                                                            aTGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCgg                                                                                                                                                                                                                            >  1:448691/1‑173 (MQ=255)                                                                                ggTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGa                                                                                                                                                                                                                        <  2:448684/173‑1 (MQ=255)                                                                                                   aataaatGCGTCAACAATTCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGAt                                                                                                                                                                           >  2:520125/1‑199 (MQ=255)                                                                                                       aatGCGTCAACAATTCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGTGGGATGTCGTTAGCCACGGGAGATTTAt                                                                                                                                                                       <  1:520132/199‑1 (MQ=255)                                                                                                       aatGCGTCAACAATTCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGCGTGCCGTGTCAACCTGGAGTTTCCAACCTTAAACTTCGCGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGTGAGATTTATCTCATAAGTAATTCACGTTGTCGCCTTAACGGCGACAACGTGAACTAAAATGTCTATTAATGTATGCCACCAATg                                                                                            >  1:282489/1‑274 (MQ=255)                                                                                                                         CACACGAAACAGACCTGATATACATGGGTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGAagacaag                                                                         <  1:410092‑M1/275‑4 (MQ=255)                                                                                                                                              aCATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACg                                                                                                                                                                                                                                                                            <  2:450045/59‑1 (MQ=255)                                                                                                                                               cATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGctgtttcgtgtgctgaattgttgacgcatttatttattggtatcgcatgaaccccatcgtaattaatcggcttcaacggaagctgggctacacttttaatcatcaggaactgttgcagcaggcatnaactcatcgtagtgccagcagtaaacataacgagcgtttagaatttttaggcgactctattcttatctacgttatcgccaatgcgctttct                                                   <  1:533958‑M2/275‑218 (MQ=255)                                                                                                                                               cATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGctgtttcgtgtgctgaattgttgacgcatttatttattggtatcgcatgaaccccatcgtaattaatcggcttcaacggaagctgggctacacttttaatcatcag                                                                                                                                                                  <  1:554547‑M2/164‑107 (MQ=255)                                                                                                                                               cATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGctgtttcgtgtgctgaattgttgacgcatttatt                                                                                                                                                                                                                                          <  2:558896‑M2/92‑35 (MQ=255)                                                                                                                                               cATGGTTCTGCTAACAGCTTCGCTGCAGTCTCAGTTTACCGGTATATGGGGACCAACGctgtttcgtgtgctgaattgttgacgcatttatttattggtatcgcatgaaccccatcgtattaatcggctccaacggaagctgggcaacacttttaatcatcaggaactgttgcagcaggcattnactcatcgtagtgccagcagtaaacataacgagcgtttagaatttttaggcgactctattctgagctacgttatcaccaatgagcctgtc                                                    <  1:500834‑M2/274‑217 (MQ=255)                                                                                                                                               cATGGTTCTGCTAACAGCTTCACTACAGCGTCAGTTTACCGGTATATGGGGACCAACGctgtttcgtgtgctgaattgttgacgcatttatttattggtatcgcatgaaccccatcgtaattaatcggcttcaacggaagctgggctacacttttaatcatcaggaactgttgcagcaggcatnaactcatcgtagt                                                                                                                                 <  1:486146‑M2/197‑140 (MQ=255)                                                                                                                                                   gTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGTGACCAACGctgtttcgtgtgctgaattgttgacgcatttatttattggtatcgcatgaaccccatcgtaattaatcggcttcaacggaagctgggctacacttttaatcatcaggaactgttgcagcaggcattaactcatcgtagtgcca                                                                                                                             >  2:486139‑M2/1‑54 (MQ=255)                                                                                                                                                   gTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGctgtttcgtgtgctgaattgttgacgcatttatttattggtatcgcatgaaccccatcgtaattaatcggcttcaacggaagctgggctacacttttaatcatcaggaac                                                                                                                                                              >  2:554538‑M2/1‑54 (MQ=255)                                                                                                                                                   gTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGctgtttcgtgtgctgaattgttgacgcatttatttatt                                                                                                                                                                                                                                      >  1:558905‑M2/1‑54 (MQ=255)                                                                                                                                                    ttCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGt                                                                                                                                                                                            >  1:356586/1‑133 (MQ=255)                                                                                                                                                      cTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCgg                                                                                                                                                                                                                            >  2:572378/1‑99 (MQ=255)                                                                                                                                                       tGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCgggg                                                                                                                                                                                                                          >  1:218469/1‑100 (MQ=255)                                                                                                                                                        gCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGtt                                                                                                                                                                                        <  2:356580/133‑1 (MQ=255)                                                                                                                                                          tAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGa                                                                                                                                                                                                                        <  1:572387/99‑1 (MQ=255)                                                                                                                                                           aaCTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAat                                                                                                                                                                                                                      <  2:218464/100‑1 (MQ=255)                                                                                                                                                                   cGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAatat                                                                                                                                                                                                                    >  2:664544/1‑94 (MQ=255)                                                                                                                                                                   cGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAatat                                                                                                                                                                                                                    >  2:92161/1‑94 (MQ=255)                                                                                                                                                                       gCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCta                                                                                                                                                                                                                <  1:92162/94‑1 (MQ=255)                                                                                                                                                                       gCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCta                                                                                                                                                                                                                <  1:664553/94‑1 (MQ=255)                                                                                                                                                                                gtttACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCgg                                                                                                                                                                                                                            >  2:436923/1‑73 (MQ=255)                                                                                                                                                                                    aCCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGa                                                                                                                                                                                                                        <  1:436930/73‑1 (MQ=255)                                                                                                                                                                                    aCCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACaa                                                                                                                                                                                                         >  2:394644/1‑88 (MQ=255)                                                                                                                                                                                        gTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAacgac                                                                                                                                                                                                     <  1:394651/88‑1 (MQ=255)                                                                                                                                                                                                ggACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCa                                                                                                                                                        >  1:560652/1‑125 (MQ=255)                                                                                                                                                                                                ggACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTTCTTATCGACGCTCATCCAGATAGCCGTTGCCCGAACGACCAGATACGCTTcc  >  1:568442/1‑275 (MQ=255)                                                                                                                                                                                                    cAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGtt                                                                                                                                                    <  2:560643/125‑1 (MQ=255)                                                                                                                                                                                                     aaCGctgtttcgtgtgctgaattgttgacgcatttatttattggtatcgcat                                                                                                                                                                                                                            <  2:117481‑M2/52‑49 (MQ=255)                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                           TGAGTTAATGCCTGCTGCAACAGTTCCTGATGATTAAAAGTGTAGCCCAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGCTTATCGAAGCTCATCCAGATAGCCGTTGCCCGACCGACCAGATTCGCTTCC  >  CP009273/2697337‑2697802

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.