New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2697468	8 (0.210)	8 (0.230)	4/288	NT	36.1%	intergenic (‑46/+226)	rnc/lepB	RNase III/leader peptidase (signal peptidase I)
	?	CP009273	= 2697536	21 (0.600)					intergenic (‑114/+158)	rnc/lepB	RNase III/leader peptidase (signal peptidase I)

ACCAGCGTGGCGCGCATCCGGCTCATATCGCCTTCATCCACACGAGGGAAACGGTGATAAAGCGCATTGGCGATAACGTAGCTCAGAATAGAGTCGCCTAAAAATTCTAAACGCTCGTTATGTTTACTGCTGGCACTACGATGAGTTAATGCCTGCTGCAACAGTTCCTGATGATTAAAAGTGTAGCCCAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAG  >  CP009273/2697196‑2697731                                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                                        aCCATCGTGGCGCGCATCCGGCTCATATCGCCTGCATCCACACGAGGGAAACGGTGATAAATCGCATTGGCGATAACGTAGCTCAGAATAGAGTCGCCTAAAAATGCTAAACGTTCGTTATGNTTACTGCTGGCATTACGATGAGTTAATGCCTGCTGCAACAGTTCCTGATGATTAAAAGTGTAGCCCAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAGAc                                                                                                                                                                                                                                                                       <  1:618846/275‑1 (MQ=255)           cgcgcATCCGGCTCATATCGCCTTCATCCACACGAGGGAAACGGTGATAAAGCGCATTGGCGATAACGTAGCTCAGAATAGAGTCGCCTAAAAATTCTAAACGCTCGTTATGTTTACTGCTGGCACTACGATGAGTTAATGCATGCTGCAACAGTTCCTGATGATCAAAAGTGTAGCCCAGCTTCCGTTGAAGCAGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAAAACGTCAACAATACAGCACAGGAAACAGAcccggccctt                                                                                                                                                                                                                                                              >  2:646425/1‑266 (MQ=255)                                       cacaCGAGGGAAACGGTAATAAAGCGCATTGGCGATAACGTAGCTCAGAATAGAGTCGCCTAAAAATTCTAAACGCTCGTTATGTTTACTGCTGGCACTACGATGAGTTAATGCCTGCTGCAACAGTTCCTGATGATTAAAAGTGTAGCCCAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAGAc                                                                                                                                                                                                                                                                       <  1:110717/237‑1 (MQ=255)                                                         gacaggctcattggtgaTAACGTAGCTCAGAATAGAGTCGCCTAAAAATTCTAAACGCTCGTTATGTTTACTGCTGGCACTACGATGAGTNAATGCCTGCTGCAACAGTTCCTGATGATTAAAAGTGTTGCCCAGCTTCCGTTGGAGCCGATTAA‑TACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAGcgttggtccccatataccggtaaactgagactgcagcgaagctgttagcagaaccatg                                                                                                                                                                                                               <  1:500834‑M1/266‑59 (MQ=255)                                                         agaaagcGCATTGGCGATAACGTAGATAAGAATAGAGTCGCCTAAAAATTCTAAACGCTCGTTATGTTTACTGCTGGCACTACGATGAGTTNATGCCTGCTGCAACAGTTCCTGATGATTAAAAGTGTAGCCCAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAGcgttggtccccatataccggtaaactgaaactgcagcgaagcagttagcagaaccatg                                                                                                                                                                                                               <  1:533958‑M1/273‑59 (MQ=255)                                                            caagaaggcgaatggccgcctggtctgatattaattcgcattggcggcatccattaattgccatcttcgttcacgttgtcgccgttatggcgacaaagtgaattatttatgagataaatctcccgtggctaacgacatcccccgtcgttgtgtatagaatattcccccgaagtttaaggttggcacctccaggttgccacgGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATggg                                                                                                                                                                                                             >  1:364433‑M1/202‑274 (MQ=255)                                                                                                    ttggcggcatccattaatagccatcttcgttcacgttgtcgccgttatggcgacaacgtgaattatttatgagataaatctcccgtggctaacgacatcccccgtcgttgtgtatagaatattcccccgaagtttaaggttggcacctccaggttgccacgGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGta                                                                                                                                                                                                                   <  1:209698‑M1/67‑1 (MQ=255)                                                                                                        cggcatccattaatagccatcttcgttcacgttgtcgccgttatggcgacaacgtgaattatttatgagataaatctcccgtggctaacgacatcccccgtcgttgtgtatagaatattcccccgaagtttaaggttggcacctccaggttgccacgGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATg                                                                                                                                                                                                               >  2:209694‑M1/158‑228 (MQ=255)                                                                                                                                   tgGCACTACGATGAGTTAATGCCTGCTGCAACAGTTCCTGATGATTAAAAGTGTAGCCCAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAGcgttggtcaccatataccggtaaactgaaactgcagcgaagcagttagcagaac                                                                                                                                                                                                                   >  2:486139‑M1/1‑143 (MQ=255)                                                                                                                                      gttgtcgccgttatggcgacaacgtgaattatttatgagataaatctcccgtggctaacgacatcccccgtcgttgtgtatagaatattcccccgaagtttaaggttggcacctccaggttgccacgGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGta                                                                                                                                                                                                                   <  1:592272‑M1/67‑1 (MQ=255)                                                                                                                                       aCTACGATGAGTTNATGCCTGCTGCAACAGTTCCTGATGATTAAAAGTGTAGCCCAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAGcgttggtccccatataccggtaaactgacgctgtagtgaagctgttagcagaaccatg                                                                                                                                                                                                               <  1:486146‑M1/197‑59 (MQ=255)                                                                                                                                          tcgccgttatggcgacaacgtgaattatttatgagataaatctcccgtggctaacgacatcccccgtcgttgtgtatagaatattcccccgaagtttaaggttggcacctccaggttgccacgGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATg                                                                                                                                                                                                               >  2:592263‑M1/124‑194 (MQ=255)                                                                                                                                          aCGATGAGTTAATGCCTGCTGCAACAGTTCCTGATGATTAAAAGTGTAGCCCAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCaa                                                                                                                                                                                                       >  2:399873/1‑202 (MQ=255)                                                                                                                                              tGAGTTAATGCCTGCTGCAACAGTTCCTGATGATTAAAAGTGTAGCCCAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGct                                                                                                                                                                                                   >  1:399880‑M2/1‑200 (MQ=255)                                                                                                                                                       gacaacgtgaattatttatgagataaatctcccgtggctaacgacatcccccgtcgttgtgtatagaatattcccccgaagtttaaggttggcacctccaggttgccacgGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGta                                                                                                                                                                                                                   <  2:408683‑M1/67‑1 (MQ=255)                                                                                                                                                           acgtgaattatttatgagataaatctcccgtggctaacgacatcccccgtcgttgtgtatagaatattcccccgaagtttaaggttggcacctccaggttgccacgGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATg                                                                                                                                                                                                               >  1:408690‑M1/107‑177 (MQ=255)                                                                                                                                                                    gTTCCTGATGATTAAAAGTGTAGCCCAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAGcgttggtccccatataccggtaaactgaaactgcagcgaagcagttagcagaac                                                                                                                                                                                                                   >  2:554538‑M1/1‑110 (MQ=255)                                                                                                                                                                        cTGATGATTAAAAGTGTAGCCCAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAGcgttggtccccatataccggtaaactgaaactgcagcgaagcagttagcagaaccatg                                                                                                                                                                                                               <  1:554547‑M1/164‑59 (MQ=255)                                                                                                                                                                                        tAGCCCAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGcagtttcag                                                                                                                                                                                                                             >  2:454589/1‑134 (MQ=255)                                                                                                                                                                                            ccAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTa                                                                                                                                                                                                                         <  1:454596/134‑1 (MQ=255)                                                                                                                                                                                                                         aTGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCgg                                                                                                                                                     >  1:448691/1‑173 (MQ=255)                                                                                                                                                                                                                             ggTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGa                                                                                                                                                 <  2:448684/173‑1 (MQ=255)                                                                                                                                                                                                                              gTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAG                                                                                                                                                                                                                                                                         >  1:117482‑M1/1‑52 (MQ=255)                                                                                                                                                                                                                                  aTGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAGcgtt                                                                                                                                                                                                                                                                     <  2:117481‑M1/52‑5 (MQ=255)                                                                                                                                                                                                                                            aataaataAATGCGTCAACAATTCAGCACACGAAACAGcgttggtccccatataccggtaaactgaaactgcagcgaagcagttagcagaac                                                                                                                                                                                                                   >  1:558905‑M1/1‑38 (MQ=255)                                                                                                                                                                                                                                                aataaatGCGTCAACAATTCAGCACACGAAACAGcgttggtccccatataccggtaaactgaaactgcagcgaagcagttagcagaaccatg                                                                                                                                                                                                               <  2:558896‑M1/92‑59 (MQ=255)                                                                                                                                                                                                                                                aataaatGCGTCAACAATTCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGAt                                                                                                    >  2:520125/1‑199 (MQ=255)                                                                                                                                                                                                                                                    aatGCGTCAACAATTCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGTGGGATGTCGTTAGCCACGGGAGATTTAt                                                                                                <  1:520132/199‑1 (MQ=255)                                                                                                                                                                                                                                                    aatGCGTCAACAATTCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGCGTGCCGTGTCAACCTGGAGTTTCCAACCTTAAACTTCGCGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGTGAGATTTATCTCATAAGTAATTCACGTTGTCGCCTTAACGGCGACAACGTGAACTAAAATGTCTATTAATGTATGCCACCAATg                     >  1:282489/1‑274 (MQ=255)                                                                                                                                                                                                                                                                      CACACGAAACAGACCTGATATACATGGGTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGAagacaag  <  1:410092‑M1/275‑4 (MQ=255)                                                                                                                                                                                                                                                                                aGcgttggtccccatataccggtaaactgaaactgcagcgaagcagttagcagaaccatgtatatcaggtctgtttcgtgtgctgaattgttgacgcatttatttattggtatcgcatgaaccccatcgtaattaatcggcttcaacggaagctgggctacacttttaatcatcaggaactgttgcagcaggcattaactca                                                                 >  1:399880‑M1/1‑2 (MQ=255)                                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                                        ACCAGCGTGGCGCGCATCCGGCTCATATCGCCTTCATCCACACGAGGGAAACGGTGATAAAGCGCATTGGCGATAACGTAGCTCAGAATAGAGTCGCCTAAAAATTCTAAACGCTCGTTATGTTTACTGCTGGCACTACGATGAGTTAATGCCTGCTGCAACAGTTCCTGATGATTAAAAGTGTAGCCCAGCTTCCGTTGAAGCCGATTAATTACGATGGGGTTCATGCGATACCAATAAATAAATGCGTCAACAATTCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAG  >  CP009273/2697196‑2697731

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.