New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3098695	25 (0.650)	4 (0.110)	4/296	NT	14.4%	coding (904/1080 nt)	mltC	membrane‑bound lytic murein transglycosylase C
	?	CP009273	= 3098817	24 (0.660)					coding (1026/1080 nt)	mltC	membrane‑bound lytic murein transglycosylase C

TTTATCTCGGCGGAATTGATAACCCAACATCGCGGCGTTATGCCGTCATCACCGCCTATAACGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3098630‑3098695 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataacggcgAGATTCCGCAGAGGGATGGCGGGTCGTCAGCGTCTGATAAACATCGCCCGGCGTCATGGTGTTAATAATATTGGCAGCCTGAATCTTATCATTCGAAAAGACTCGCAGCAC  <  CP009273/3098817‑3098707                                                                                                                                                                                   TTTATCTCGGCGGAATTGATAACCCAACATCGCGGCGTTATGCCGTCATCACCGCCTATAACGGCGAGATTCCGCAGAGGGATGGCGGGTCGTCAGCGTCTGATAAACATCGCCCGGCGTCATGGT                                                     >  2:443743/1‑126     TCTCGGCGGAATTGATAACCCAACATCGCGGCGTTATGCCGTCATCACCGCCTATAACGGCGAGATTCCGCAGAGGGATGGCGGGTCGTCAGCGTCTGATAAACATCGCCCGGCGTCATGGTGTTA                                                 <  1:443750/126‑1      CTCGGCGGAATTGATAACCCAACATCGCGGCGTTATGCCGTCATCACCGCCTATAACGGCGAGATTCCGCAGAGGGATGGCGGGTCGTCAGCGTCTGATAAACATCGCCCGGCGTCATGGTGTTAATAATATTGGCAGCCTGAATCTTATCATTCGAAACGACTCGCA      >  2:584971/1‑168          GCGGAATTGATAACCCAACATCGCGGCGTTATGCCGTCATCACCGCCTATAACGGCGAGATTCCGCAGAGGGATGGCGGGTCGTCAGCGTCTGATAAACATCGCCCGGCGTCATGGTGTTAATAATATTGGCAGCCTGAATCTTATCATTCGAAAAGACTCGCAGCAC  <  1:584980/168‑1                                                           TAACGGCGAGATTCCGCAGAGGGATGGCGGGTCGTCAGCGTCTGATAAACATCGCCCGGCGTCATGGTGTTAATAATA                                           >  1:337172/1‑78                                                           TAACGGCGAGATTCCGCAGAGGGATGGCGGGTCGTCAGCGTCTGATAAACATCGCCCGG                                                              >  1:707860/1‑59                                                               GGCGAGATTCCGCAGAGGGATGGCGGGTCGTCAGCGTCTGATAAACATCGCCCGGCGTCATGGTGTTAATAATATTGG                                       <  2:337166/78‑1                                                               GGCGAGATTCCGCAGAGGGATGGCGGGTCGTCAGCGTCTGATAAACATCGCCCGGCGTC                                                          <  2:707850/59‑1                                                                                                                                                                                   TTTATCTCGGCGGAATTGATAACCCAACATCGCGGCGTTATGCCGTCATCACCGCCTATAACGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3098630‑3098695 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataacggcgAGATTCCGCAGAGGGATGGCGGGTCGTCAGCGTCTGATAAACATCGCCCGGCGTCATGGTGTTAATAATATTGGCAGCCTGAATCTTATCATTCGAAAAGACTCGCAGCAC  <  CP009273/3098817‑3098707

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.