New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3098695	25 (0.650)	4 (0.110)	4/296	NT	14.4%	coding (904/1080 nt)	mltC	membrane‑bound lytic murein transglycosylase C
	?	CP009273	= 3098817	24 (0.660)					coding (1026/1080 nt)	mltC	membrane‑bound lytic murein transglycosylase C

TTTGATCCTGCCAGCAATATTGATACCGGCACCGCGTATCTGGCGATGCTGAACAATGTTTATCTCGGCGGAATTGATAACCCAACATCGCGGCGTTATGCCGTCATCACCGCCTATAACGGCGGCGCAGGCAGCGTGCTGCGAGTCTTTTCGAATGATAAGATTCAGGCTGCCAATATTATTAACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGGGAATGTTTGCAATTATTTGCCACAGGTAACAAAAAACCAGTCCGCGAAGTTGATAGAATCCCATCATCTCGCACGGTCAAATGTGCTTTTTCAAACACTCATCCGCATCACGATGTGAGGAAAT  >  CP009273/3098572‑3099068                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                            tttGATCCTGCCAGCAATATTGATACCGGCACCGCGTATCTGGCGATGCTGAACAATGTTTATCTCGGCGGAATTGATAACCCAACATCGCGGCGTTATGCCGTCATCACCGCCTATAACGGCGGCGCAGGCAGCGTGCTGCGAGTCTTTTCGAATGATAAGATTCAGGCTGCCAATATTATTAACACCATGACGCCGGGCGCTGTTTATCAGACGCTGACCACCCCACATCCCTCTGCGTAATCTCGCCGTTAGCTTTATACAGTGAATTCcg                                                                                                                                                                                                                                 >  2:229555/1‑274 (MQ=255)      tCCTGCCAGCATTATTGATACCGGCACCGCGTATCTGGCGAGGCTGAACAATGTTTATCTCGGCGGAATTGATAACCCAACATCGCGGCGTTATGCCGTCATCACCGCCTATAACGGCGGCGCAGGCAGCGTGCTGCGAGTCTTTTCGAATGATAAGATTCAGGCTGCCAATATTATTAACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCaa                                                                                                                                                                                                                            <  1:229560/274‑1 (MQ=255)            cAGCAATATTGATACCGGCACCGCGTATCTGGCGATGCTGAACAATGTTTATCTCGGCGGAATTGATAACCCAACATCGCGGCGTTATGCCGTCATCACCGCCTATAACGGCGGCGCAGGCAGCGTGCTGCGAGTCTTTTCGAATGCTAAGAGTCAGGCTGCCAATATTATTAACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCt                                                                                                                                                                                                                     >  1:627615/1‑275 (MQ=255)                           cgcccccGCGTATCTGGCGATGCTGAACAATGTTTCTCTCGGCGCAATTGCTACCCCAACTTCGCGGCGTTATGCCGTCATCACCGCCTATAACGGCGGCGCAGGCAGCGTGCTGCGAGTCTTTTCGAATGATAAGATTCAGGCTGCCAATATTATTAACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAAt                                                                                                                                                                                                      <  2:627606/270‑1 (MQ=255)                                          ggCGATGCTTAAAAAGTTTTATCTCGGCGGAATTGATAACCCAACATCGCGGCGTTATGCCGTCATCACCGCCTATAACGGCGGCGCAGGCAGCGTGCTGCGAGTCTTGTCGAATGATAAGATTCAGGCTGCCAATATTATTAACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACTGCCGCCGATAATTCCATTAACCGcccc                                                                                                                                                                                       <  1:415529/275‑1 (MQ=255)                                                         tGTTTATCTCGGCGGAATTGATAACCCAACATCGCGGCGTTATGCCGTCATCACCGCCTATAACGGCGGCGCAGGCAGCGTGCTGCGAGTCTTTTCGAATGATAAGATTCAGGCTGCCAATATTATTAACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTAccgccgccg                                                                                                                                                                                                           >  2:579319/1‑240 (MQ=255)                                                             tATCTCGGCGGAATTGATAACCCAACATCGCGGCGTTATGCCGTCATCACCGCCTATAACGGCGGCGCAGGCAGCGTGCTGCGAGTCTTTTCGAATGATAAGATTCAGGCTGCCAATATTATTAACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATaa                                                                                                                                                                                                       <  1:579328/240‑1 (MQ=255)                                                                                     aCATCGCGGCGTTATGCCGTCATCACCGCCTATAACGGCGGCGCAGGCAGCGTGCTGCGAGTCTTTTCGAATGATAAGATTCAGGCTGCCAATATTATTAACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTAccgccgccg                                                                                                                                                                                                           >  1:300914/1‑212 (MQ=255)                                                                                      cATCGCGGCGTTATGCCGTCATCACCGCCTATAACGGCGGCGCAGGCAGCGTGCTGCGAGTCTTTTCGAATGATAAGATTCAGGCTGCCAATATTATTAACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAggg                                                                                                                                                                        >  1:689851/1‑246 (MQ=255)                                                                                          gcggcgTTATGCCGTCATCACCGCCTATAACGGCGGCGCAGGCAGCGTGCTGCGAGTCTTTTCGAATGATAAGATTCAGGCTGCCAATATTATTAACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTtat                                                                                                                                                                                                                                              <  1:393278/172‑1 (MQ=255)                                                                                          gcggcgTTATGCCGTCATCACCGCCTATAACGGCGGCGCAGACAGCGTGCTGCGAGTCTTTTCGAATGATAAGATTCAGGCTGCCAATATTATTAACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCaa                                                                                                                                                                    <  2:689842/246‑1 (MQ=255)                                                                                                        tcatcaCCGCCTATAACGGCGGCGCAGGCAGCGTGCTGCGAGTCTTTTCGAATGATAAGATTCAGGCTGCCAATATTATTAACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTCTAACGTGAATACCGCGCCAAAATCGTACCGCCGCACATAATTCCATTAACCGCCCCTGACCATGCTCCGGGGCAAAAATTTTATCCACATCACCATTCCTTTTTGCAACATGGGAATg                                                                                                                         >  2:15770/1‑275 (MQ=255)                                                                                                                           cggcgCAGGCAGCGTGCTGCGAGTCTTTTCGAATGATAAGATTCAGGCTGCCAATATTATTAACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGt                                                                                                                                          >  2:247554/1‑239 (MQ=255)                                                                                                                           cggcgCAGGCAGCGTGCTGCGAGTCTTTTCGAATGATAAGATTCAGGCTGCCAATATTATTAACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTCACGATTCTCAggg                                                                                                                                                                        >  1:692573/1‑209 (MQ=255)                                                                                                                               gcaggcagCGTGCTGCGAGTCTTTTCGAATGATAAGATTCAGGCTGCCAATATTATTAACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTg                                                                                                                                      <  1:247559/239‑1 (MQ=255)                                                                                                                                        gTGCTGCGAGTCTTTTCGAATGATAAGATTCAGGCTGCCAATATTATTAACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTcgccgttataggcggtgatgacggcataacgccgcgatgttgggttatcaattccgc                                                                                                                                                                                                    <  1:584980‑M2/168‑58 (MQ=255)                                                                                                                                            tgcGAGTCGTTTCGAATGATAAGATTCAGGCTGCCAATATTATTAACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTcgccgttataggcggtgatgacggcataacgccgcgatgttgggttatcaattccgccgag                                                                                                                                                                                                >  2:584971‑M2/1‑107 (MQ=255)                                                                                                                                                 gTCTTTTCGAATGATAAGATTCAGGCTGCCAATATTATTAACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTta                                                                                                                                                                                                                                               >  2:429906/1‑116 (MQ=255)                                                                                                                                                 attttttAGATTGTTAAGATTAAAGGTGCCAATATTTTTACCACANGGACGCCGGGCGATGTTTATCCGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGGGAATGTTTGCAATTATTTGCCACAGGTAACAAAAAACCAGTCcgc                                                                                 <  2:442348/271‑1 (MQ=255)                                                                                                                                                     tttCGAATGATAAGATTCAGGCTGCCAATATTATTAACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATaaa                                                                                                                                                                                                                                           <  1:429913/116‑1 (MQ=255)                                                                                                                                                                             ccAATATTATTAACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTcgcc                                                                                                                                                                                                                                                         <  2:337166‑M2/78‑5 (MQ=255)                                                                                                                                                                                 tattatTAACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTcgccgtta                                                                                                                                                                                                                                                     >  1:337172‑M2/1‑70 (MQ=255)                                                                                                                                                                                     attaACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCCCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGGGAATGTTTGCAATTATTTGCCACAGGTACAAAAAAACCAGTCCGCGAAGTTGATAAAATCCCATCATCTACCACGGTCaaa                                             >  2:632939/1‑274 (MQ=255)                                                                                                                                                                                       taACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTcgccgttataggcggtgatgacggcataacgccgcgatgttgggttatcaattccgccgaga                                                                                                                                                                                               <  1:443750‑M2/126‑63 (MQ=255)                                                                                                                                                                                           acCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTcgccgttataggcggtgatgacggcataacgccgcgatgttgggttatcaattccgccgagataaa                                                                                                                                                                                           >  2:443743‑M2/1‑60 (MQ=255)                                                                                                                                                                                           acCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTa                                                                                                                                                            >  2:521634/1‑157 (MQ=255)                                                                                                                                                                                               tGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCca                                                                                                                                                        <  1:521641/157‑1 (MQ=255)                                                                                                                                                                                                gACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTcgcc                                                                                                                                                                                                                                                         <  2:707850‑M2/59‑5 (MQ=255)                                                                                                                                                                                                    ccGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTcgccgtta                                                                                                                                                                                                                                                     >  1:707860‑M2/1‑51 (MQ=255)                                                                                                                                                                                                       ggCGACGTTTAACAGACGCTGACAACCCGCCATCCCTCCGCGGATTCTCGCCGTTATCTTTATAAAGCTAATACACCACAAAAATCCTACCGCCGCCGACAATTCCATTACCGGCCCTCGACGACGCACAGGGGGAAATACCTCAGCCACATCCAACTTTCGCTTTGAAAATCGCGACTGTTTGCAATTATTTGCCTCACTTAATAAAAAACCCGCACCTGACGCAGAAAGCATACCATAATCCCGCAGGGTCAAATGGGCTATTTCAAccacgc                          >  2:686958/1‑273 (MQ=255)                                                                                                                                                                                                                      aCGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGAGGCTCAGGAGCAAAAATGTTATCCACATCACAATTTAGTTTTGCAAATAGGGAATGTTTGAAATTAttt                                                                                                            >  2:612252/1‑178 (MQ=255)                                                                                                                                                                                                                          tGACGACCCGCCATCCCTCTGCGGANTCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGGGAATGTTTGCAATTATTTGCca                                                                                                        <  1:612261/178‑1 (MQ=255)                                                                                                                                                                                                                               acCCGCCATCCCGCTGCTGAAGCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATTCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGGGAATGTTTGCAATTATTTGCCACAGGTAACAAAAAACCAGTCCGCGAAGTTGATAGAATCCCATCATCTCGCACGGTCAAATGTGCTTTTTCAAACACTCATCCGCATCACGATGTGAGGAAAt  <  1:15770/275‑1 (MQ=255)                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                            TTTGATCCTGCCAGCAATATTGATACCGGCACCGCGTATCTGGCGATGCTGAACAATGTTTATCTCGGCGGAATTGATAACCCAACATCGCGGCGTTATGCCGTCATCACCGCCTATAACGGCGGCGCAGGCAGCGTGCTGCGAGTCTTTTCGAATGATAAGATTCAGGCTGCCAATATTATTAACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGGGAATGTTTGCAATTATTTGCCACAGGTAACAAAAAACCAGTCCGCGAAGTTGATAGAATCCCATCATCTCGCACGGTCAAATGTGCTTTTTCAAACACTCATCCGCATCACGATGTGAGGAAAT  >  CP009273/3098572‑3099068

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.