New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3098695	25 (0.650)	4 (0.110)	4/296	NT	14.4%	coding (904/1080 nt)	mltC	membrane‑bound lytic murein transglycosylase C
	?	CP009273	= 3098817	24 (0.660)					coding (1026/1080 nt)	mltC	membrane‑bound lytic murein transglycosylase C

TCCGATGCGCTGGGATTAATGCAGGTGGTACAACATACTGCCGGGAAAGATGTGTTCCGCTCGCAGGGGAAATCCGGCACGCCGAGCCGCAGTTTCTTGTTTGATCCTGCCAGCAATATTGATACCGGCACCGCGTATCTGGCGATGCTGAACAATGTTTATCTCGGCGGAATTGATAACCCAACATCGCGGCGTTATGCCGTCATCACCGCCTATAACGGCGGCGCAGGCAGCGTGCTGCGAGTCTTTTCGAATGATAAGATTCAGGCTGCCAATATTATTAACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGGGAATG  >  CP009273/3098473‑3098949                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                               tCCGATGCGCTGGGATTAATGCAGGTGGTACAACATACTGCCGGGAAAGATGTGTTCCGCTCGCAGGGGAAATCCGGCACGCCGAGCCGCNGTTTCTTGTTTGATCCTGCCAGCAATATTGATACCGGCGCCGCGTATCTGGCGATGCTGAACAATGTTTATCTCGGCGGAATTGATAACCCAACATCGCGGCGTTATGCCGTCATCACCGCCTATAACGGCGGCGCAGGCAGCGTGCTGCGAGTCTTTTCGAATGATAAGATTCAGGCTGCCa                                                                                                                                                                                                             <  1:562140/274‑1 (MQ=255)      tGCGCTGGGATTAATGCAGGGGGGACCACATACTGCCGGGAAAGATGTGTTCCGCTCGCAGGGGAAATCCGGCACGCCGGGCCGCAGTTTCTTGTTTGATCCTGCCAGCAATATTGATACCGGCACCGCGTATCTGGCGATGCTGAACAATGTTTATCTCGGCGGAATTGATAACCCAACATCGCGGCGTTATGCCGTCATCACCGCCTATAACGGCGGCGCAGGCAGCGTGCTGCGAGTCTTTTCGAATGATAAGATTCAGGCTGCCAAtatt                                                                                                                                                                                                        <  2:667897/274‑1 (MQ=255)                   aTGCAGGTGGTACAACATACTGCCGGGAAAGATGTGTTCCGCTCGCAGGGGAAATCCGGCACGCCGAGCCGCAGTTTCTTGTTTGATCCTGCCAGCAATATTGATACCGGCACCGCGTATCTGGCGATGCTGAACAATGTTTATCTCGGCGGAATTGATAACCCAACATCGCGGCGTTATGCCGTCATCACCGCCTATAACGGCGGCGCAGGCAGCGTGCTGCGAGTCTTTTCGAATGATAAGATTCAGGCTGCCAATATTATTAAAACCATGat                                                                                                                                                                                          >  1:442355/1‑274 (MQ=255)                                                                               aCGCCGAGCCGCAGTTTCTTGTTTGATCCTGCCAGCAATATTGATACCGGCACCGCGTATCTGGCGATGCTGAACAATGTTTATCTCGGCGGAATTGATAACCCAACATCGCGGCGTTATGCCGTCATCACCGCCTATAACGGCGGCGCAGGCAGCGTGCTGCGAGTCTTTTCGAATGATAAGATTCAGGCTGCCAATATTATTaa                                                                                                                                                                                                   <  1:216906/206‑1 (MQ=255)                                                                               aCGCCGAGCCGCAGTTTCTTGTTTGATCCTGCCAGCAATATTGATACCGGCACCGCGTATCTGGCGATGCTGAACAATGTTTATCTCGGCGGAATTGATAACCCAACATCGCGGCGTTATGCCGTCATCACCGCCTATAACGGCGGCGCAGGCAGCGTGCTGCGAGTCTTTTCGAATGATAAGATTCAGGCTGCCAATATTATTaa                                                                                                                                                                                                   >  2:216902/1‑206 (MQ=255)                                                                                                    tttGATCCTGCCAGCAATATTGATACCGGCACCGCGTATCTGGCGATGCTGAACAATGTTTATCTCGGCGGAATTGATAACCCAACATCGCGGCGTTATGCCGTCATCACCGCCTATAACGGCGGCGCAGGCAGCGTGCTGCGAGTCTTTTCGAATGATAAGATTCAGGCTGCCAATATTATTAACACCATGACGCCGGGCGCTGTTTATCAGACGCTGACCACCCCACATCCCTCTGCGTAATCTCGCCGTTAGCTTTATACAGTGAATTCcg                                                                                                          >  2:229555/1‑274 (MQ=255)                                                                                                       gATCCTGCCAGCAATATTGATACCGGCACCGCGTATCTGGCGATGCTGAACAATGTTTATCTCGGCGGAATTGATAACCCAACATCGCGGCGTTATGCCGTCATCACCGCCTATAACGGCGGCGCAGGCAGCGTGCTGCGAGTCTTTTCGAATGATAAGATTCAg                                                                                                                                                                                                                    >  2:234763/1‑165 (MQ=255)                                                                                                         tCCTGCCAGCATTATTGATACCGGCACCGCGTATCTGGCGAGGCTGAACAATGTTTATCTCGGCGGAATTGATAACCCAACATCGCGGCGTTATGCCGTCATCACCGCCTATAACGGCGGCGCAGGCAGCGTGCTGCGAGTCTTTTCGAATGATAAGATTCAGGCTGCCAATATTATTAACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCaa                                                                                                     <  1:229560/274‑1 (MQ=255)                                                                                                           cTGCCAGCAATATTGATACCGGCACCGCGTATCTGGCGATGCTGAACAATGTTTATCTCGGCGGAATTGATAACCCAACATCGCGGCGTTATGCCGTCATCACCGCCTATAACGGCGGCGCAGGCAGCGTGCTGCGAGTCTTTTCGAATGATAAGATTCAGGCTg                                                                                                                                                                                                                <  1:234768/165‑1 (MQ=255)                                                                                                               cAGCAATATTGATACCGGCACCGCGTATCTGGCGATGCTGAACAATGTTTATCTCGGCGGAATTGATAACCCAACATCGCGGCGTTATGCCGTCATCACCGCCTATAACGGCGGCGCAGGCAGCGTGCTGCGAGTCTTTTCGAATGCTAAGAGTCAGGCTGCCAATATTATTAACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCt                                                                                              >  1:627615/1‑275 (MQ=255)                                                                                                                              cgcccccGCGTATCTGGCGATGCTGAACAATGTTTCTCTCGGCGCAATTGCTACCCCAACTTCGCGGCGTTATGCCGTCATCACCGCCTATAACGGCGGCGCAGGCAGCGTGCTGCGAGTCTTTTCGAATGATAAGATTCAGGCTGCCAATATTATTAACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAAt                                                                               <  2:627606/270‑1 (MQ=255)                                                                                                                                      cgTATCTGGCGATGCTGAACAATGTTTATCTCGGCGGAATTGATAACCCAACATCGCGGCGTTATGCCGTCATCACCGCCTATAACGGCGGCGCAGGCAGCGTGCTGCGAGTCTTTTCGAATGATAAGATTCAGGCTGCCAatat                                                                                                                                                                                                         >  1:70353/1‑145 (MQ=255)                                                                                                                                          tCTGGCGATGCTGAACAATGTTTATCTCGGCGGAATTGATAACCCAACATCGCGGCGTTATGCCGTCATCACCGCCTATAACGGCGGCGCAGGCAGCGTGCTGCGAGTCTTTTCGAATGATAAGATTCAGGCTGCCAATattatt                                                                                                                                                                                                     <  2:70352/145‑1 (MQ=255)                                                                                                                                             ggCGATGCTTAAAAAGTTTTATCTCGGCGGAATTGATAACCCAACATCGCGGCGTTATGCCGTCATCACCGCCTATAACGGCGGCGCAGGCAGCGTGCTGCGAGTCTTGTCGAATGATAAGATTCAGGCTGCCAATATTATTAACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACTGCCGCCGATAATTCCATTAACCGcccc                                                                <  1:415529/275‑1 (MQ=255)                                                                                                                                                            tGTTTATCTCGGCGGAATTGATAACCCAACATCGCGGCGTTATGCCGTCATCACCGCCTATAACGGCGGCGCAGGCAGCGTGCTGCGAGTCTTTTCGAATGATAAGATTCAGGCTGCCAATATTATTAACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTAccgccgccg                                                                                    >  2:579319/1‑240 (MQ=255)                                                                                                                                                              tttATCTCGGCGGAATTGATAACCCAACATCGCGGCGTTATGCCGTCATCACCGCCTATAACGGCGagattccgcagagggatggcgggtcgtcagcgtctgataaacatcgcccggcgtcatggt                                                                                                                                                                                                    >  2:443743‑M1/1‑66 (MQ=255)                                                                                                                                                                tATCTCGGCGGAATTGATAACCCAACATCGCGGCGTTATGCCGTCATCACCGCCTATAACGGCGGCGCAGGCAGCGTGCTGCGAGTCTTTTCGAATGATAAGATTCAGGCTGCCAATATTATTAACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATaa                                                                                <  1:579328/240‑1 (MQ=255)                                                                                                                                                                  tctcGGCGGAATTGATAACCCAACATCGCGGCGTTATGCCGTCATCACCGCCTATAACGGCGagattccgcagagggatggcgggtcgtcagcgtctgataaacatcgcccggcgtcatggtgtta                                                                                                                                                                                                <  1:443750‑M1/126‑65 (MQ=255)                                                                                                                                                                   ctcGGCGGAATTGATAACCCAACATCGCGGCGTTATGCCGTCATCACCGCCTATAACGGCGagattccgcagagggatggcgggtcgtcagcgtctgataaacatcgcccggcgtcatggtgttaataatattggcagcctgaatcttatcattcgaaacgactcgca                                                                                                                                                     >  2:584971‑M1/1‑61 (MQ=255)                                                                                                                                                                       gcggAATTGATAACCCAACATCGCGGCGTTATGCCGTCATCACCGCCTATAACGGCGagattccgcagagggatggcgggtcgtcagcgtctgataaacatcgcccggcgtcatggtgttaataatattggcagcctgaatcttatcattcgaaaagactcgcagcac                                                                                                                                                 <  1:584980‑M1/168‑112 (MQ=255)                                                                                                                                                                                        aCATCGCGGCGTTATGCCGTCATCACCGCCTATAACGGCGGCGCAGGCAGCGTGCTGCGAGTCTTTTCGAATGATAAGATTCAGGCTGCCAATATTATTAACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTAccgccgccg                                                                                    >  1:300914/1‑212 (MQ=255)                                                                                                                                                                                         cATCGCGGCGTTATGCCGTCATCACCGCCTATAACGGCGGCGCAGGCAGCGTGCTGCGAGTCTTTTCGAATGATAAGATTCAGGCTGCCAATATTATTAACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAggg                                                 >  1:689851/1‑246 (MQ=255)                                                                                                                                                                                             gcggcgTTATGCCGTCATCACCGCCTATAACGGCGGCGCAGGCAGCGTGCTGCGAGTCTTTTCGAATGATAAGATTCAGGCTGCCAATATTATTAACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTtat                                                                                                                       <  1:393278/172‑1 (MQ=255)                                                                                                                                                                                             gcggcgTTATGCCGTCATCACCGCCTATAACGGCGGCGCAGACAGCGTGCTGCGAGTCTTTTCGAATGATAAGATTCAGGCTGCCAATATTATTAACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCaa                                             <  2:689842/246‑1 (MQ=255)                                                                                                                                                                                              cggcgTTATGCCGTCATCACCGCCTATAACGGCGGCGCAGGCAGCGTGCTGCGAGTCTTTTCGaa                                                                                                                                                                                                                                 >  2:11416/1‑65 (MQ=255)                                                                                                                                                                                              cggcgTTATGCCGTCATCACCGCCTATAACGGCGGCGCAGGCAGCGTGCTGCGAGTCTTTTCGAATGATAAGATTCAGGCt                                                                                                                                                                                                                 >  1:446504/1‑81 (MQ=255)                                                                                                                                                                                                  gTTATGCCGTCATCACCGCCTATAACGGCGGCGCAGGCAGCGTGCTGCGAGTCTTTTCGAATGAt                                                                                                                                                                                                                             <  1:11416/65‑1 (MQ=255)                                                                                                                                                                                                  gTTATGCCGTCATCACCGCCTATAACGGCGGCGCAGGCAGCGTGCTGCGAGTCTTTTCGAATGATAAGATTCAGGCTGCCa                                                                                                                                                                                                             <  2:446497/81‑1 (MQ=255)                                                                                                                                                                                                           tcatcaCCGCCTATAACGGCGGCGCAGGCAGCGTGCTGCGAGTCTTTTCGAATGATAAGATTCAGGCTGCCAATATTATTAACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTCTAACGTGAATACCGCGCCAAAATCGTACCGCCGCACATAATTCCATTAACCGCCCCTGACCATGCTCCGGGGCAAAAATTTTATCCACATCACCATTCCTTTTTGCAACATGGGAATg  >  2:15770/1‑275 (MQ=255)                                                                                                                                                                                                                        taACGGCGagattccgcagagggatggcgggtcgtcagcgtctgataaacatcgcccggcgtcatggtgttaataata                                                                                                                                                                                          >  1:337172‑M1/1‑8 (MQ=255)                                                                                                                                                                                                                        taACGGCGagattccgcagagggatggcgggtcgtcagcgtctgataaacatcgcccgg                                                                                                                                                                                                             >  1:707860‑M1/1‑8 (MQ=255)                                                                                                                                                                                                                            ggCGagattccgcagagggatggcgggtcgtcagcgtctgataaacatcgcccggcgtcatggtgttaataatattgg                                                                                                                                                                                      <  2:337166‑M1/78‑75 (MQ=255)                                                                                                                                                                                                                            ggCGagattccgcagagggatggcgggtcgtcagcgtctgataaacatcgcccggcgtc                                                                                                                                                                                                         <  2:707850‑M1/59‑56 (MQ=255)                                                                                                                                                                                                                              cggcgCAGGCAGCGTGCTGCGAGTCTTTTCGAATGATAAGATTCAGGCTGCCAATATTATTAACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGt                   >  2:247554/1‑239 (MQ=255)                                                                                                                                                                                                                              cggcgCAGGCAGCGTGCTGCGAGTCTTTTCGAATGATAAGATTCAGGCTGCCAATATTATTAACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTCACGATTCTCAggg                                                 >  1:692573/1‑209 (MQ=255)                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                               TCCGATGCGCTGGGATTAATGCAGGTGGTACAACATACTGCCGGGAAAGATGTGTTCCGCTCGCAGGGGAAATCCGGCACGCCGAGCCGCAGTTTCTTGTTTGATCCTGCCAGCAATATTGATACCGGCACCGCGTATCTGGCGATGCTGAACAATGTTTATCTCGGCGGAATTGATAACCCAACATCGCGGCGTTATGCCGTCATCACCGCCTATAACGGCGGCGCAGGCAGCGTGCTGCGAGTCTTTTCGAATGATAAGATTCAGGCTGCCAATATTATTAACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGGGAATG  >  CP009273/3098473‑3098949

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.