| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3515028 | 32 (0.830) | 24 (0.660) | 10/296 | NT | 44.8% | coding (304/540 nt) | hofN | DNA catabolic putative fimbrial assembly protein |
| ? | CP009273 | = 3515380 | 29 (0.800) | coding (731/780 nt) | hofM | DNA catabolic putative pilus assembly protein | |||||
TTCTAGTGCGTTTAACGCGGTAATGCTTGTTGTCAGCCCCTTGATCTCCAGCGTTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3514918‑3515028‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgccag‑G‑‑TGGAG‑‑‑ACTTTGCCATCGCGCTGGGGCTGGCGCTTGGGAAGGCGTACTGATGAACCCGCCAATTAATTTTTTGCCCTGGCGACAGCAACGCCGGACCGCTTTTCTGCGTTTCTGGTTGCTGATGTTCGTTGCGCCTCTGCTGCTGGCCGTCGGGATAACGCTAATACTGCGTCTGACAGGCAGCGCCGAAGCGCGCATAGACGCAGTTTTGCTTCAGGCGGAACAACAACTCGCCCGCAGCTTACAGATAACGAAGCCACGTTTGCTGGAG < CP009273/3515380‑3515110 TTCTGGTGCGTNTTACGCGGTAATGCTTGTTGTCAGCCCCTTGATCTCCAGCGTTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCATCGCGCTGGGGCTGGCGCTTGGGAAGGCGTACTGATGAACCCGCCAATTAATTTTTTGCCCTGGCGACAGCAACGCCGGACCGCTTTTCTGCGTTTCTGGTTGCTGATGTTCGTTGCGCCTCTGCTGCTGGCCGTCGGGATAA < 2:61153/275‑1 TCAGCCCCTTGATATCCAGCGTTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAG‑G‑‑TGGAG‑‑‑ACTTTGCCATCGCGCTGGGGCTGGCGCTTGGGAAGGCGTACTGATGAACCCGCCAATTAATTTTTTGCCCTGGCGAGAGCAACGCCGGACCGCTTTTCTGCGTTTCTGGTTGCTGATGATCGTTGCGCGTCAGATGATGGCCGTCGGGATAAAGCGAATACGTCGTATGACAGGCATCGCCGGAGGGCGg > 2:14584/1‑274 AGCCCCTTGATCTCCAGCGTTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGC > 2:576951/1‑71 CCTTGATCTCCAGCGTTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCC < 1:576960/71‑1 TCCAGCGTTCCCTGCTGCCCGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAG‑G‑‑TGGAG‑‑‑ACTTTGCCATCGCGCTGGGGCTGGCGCTTGGGAAGGCGTACTGATGAACCCGCCAATTAATTTTTTGCCCTGGCGACAGCAACGCCGGACCGCTTTTCTGCGTTTCTGGTTGCTGATGTTCGTTGCGCCTCTGCTGCTGGCCGTCGGG > 1:579743/1‑219 TCCAGCGTTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAG‑G‑‑TGGAG‑‑‑ACTTTGCCATCGCGCTGGGGCTGGCGCTTGGGAAGGCGTACTGCTGAACCCGCCAATTAATTTTTTGCCCTGGCGACAGCAACGCCGGACCGCTTTTCTGCGTTTCTGGTTGCTGATGTTCGTTGCGCCTCTGCTGCTGGCCGTCG > 2:56291/1‑217 TCCAGCGTTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAG‑G‑‑TGGAG‑‑‑ACTTTGCCATCGCGCTGGGGCTGGCGCTTGGGAAGGCGTACTGATGAACCCGCCAATTAATTTTTTGCCCTGGCGACAGCAACGCCGGACCGCTTTTCTGCGTTTCTGGTTGCTGATGTTCGTTGCGCCTCTGCTGCTGGCCGTCG > 1:445745/1‑217 TCCAGCGTTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAG‑G‑‑TGGAG‑‑‑ACTTTGCCATCGCGCTGGGGCTGGCGCTTGGGAAGGCGTACTGATGAACCCGCCAATTAATTTTTTGCCCTGGCGACAGCAACGCCGGACCGCTTTTCTGCGTTTCTGGTTGCTGATGTTCGTTGCGCCTCTGCTGCTGGCCGTCG > 2:449404/1‑217 TCCAGCGTTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAG‑G‑‑TGGAG‑‑‑ACTTTGCCATCGCGCTGGGGCTGGCGCTTGGGAAGGCGTACTGATGAACCCGCCAATTAATTTTTTGCCCTGGCG > 2:565626/1‑146 TCCAGCGTTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAG‑G‑‑TGGAG‑‑‑ACTTTGCCATCGCGCTGGGGCTGGCGCTTGGGAAGGCGTACTGATGAACCCGCCAATTAATTTT > 2:209349/1‑135 TCCAGCGTTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAG‑G‑‑TGGAG‑‑‑ACTTTGCCATCGCGCTGGGGC > 1:20818/1‑92 TCCAGCGTTCCCTGCTGCCAGCTTATCGTTATCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAG‑G‑‑TGGAG‑‑‑ACTTTGCCATCGCGCTGGGGCTGGCGCTTGGGAAGGCGTACTGATGAACCCGCCAATTAATTTTTTGCCCTGGCGACAGCAACGCCGGACCGCTTTTCTGCGTTTCTGGTTGCTGATGTTCGTTGCGCCTCTGCTGCTGGCCGTCGGG > 1:42260/1‑219 CAGCGTTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAG‑G‑‑TGGAG‑‑‑ACTTTGCCATCGCGCTGGGGCTGGCGCTTGGGAAGGCGTACTGATGAACCCGCCAATTAATTTTTTGCCCTGGCGACAGCAACGCCGGACCGCTTTTCTGCGTTTCTGGTTGCTGATGTTCGTTGCGCCTCTGCTGCTGGCCGTCG > 1:348747/1‑215 acgtccaCTGCTGCCAGCTTGTCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAG‑G‑‑TGGAG‑‑‑ACTTTGCCATCGCGCTGGGGCTGGCGCTTGGGAAGGCGTACTGATGAACCCGCCAATTAATTTTTTGCCCTGGCGACAGCAACGCCGGACCGCTTTTCTGCGTTTCTGGTTGCTGATGTTCGTTGCGCCTCTGCTGCTGGCCGTCGGGAT < 2:358076/210‑1 GCGTTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAG‑G‑‑TGGAG‑‑‑ACTTTGCCATCGCGCTGGGGCTGGCGCTTGGGAAGGCGTACTGATGAACCCGCCAATTAATTTTTTGCCCTGGCGACAGCAACGCCGGACCGCTTTTCTGCGTTTCTGGTTGCTGATGTTCGTTGCGCCTCTGCTGCTGGCCGTCGGGATAA < 2:579734/219‑1 GCGTTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAG‑G‑‑TGGAG‑‑‑ACTTTGCCATCGCGCTGGGGCTGGCGCTTGGGAAGGCGTACTGATGAACCCGCCAATTAATTTTTTGCCCTGGCGACAGCAACGCCGGACCGCTTTTCTGCGTTTCTGGTTGCTGATGTTCGTTGCGCCTCTGCTGCTGGCCGTCGGGAT < 2:445738/217‑1 GCGTTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAG‑G‑‑TGGAG‑‑‑ACTTTGCCATCGCGCTGGGGCTGGCGCTTGGGAAGGCGTACTGATGAACCCGCCAATTAATTTTTTGCCCTGGCGACAGCAACGCCGGACCGCTTTTCTGCGTTTCTGGTTGCTGATGTTCGTTGCGCCTCTGCTGCTGGCCGTCGGGAT < 1:56291/217‑1 GCGTTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAG‑G‑‑TGGAG‑‑‑ACTTTGCCATCGCGCTGGGGCTGGCGCTTGGGAAGGCGTACTGATGAACCCGCCAATTAATTTTTTGCCCTGGCGACAGCAACGCCGGACCGCTTTTCTGCGTTTCTGGTTGCTGATGTTCGTTGCGCCTCTGCTGCTGGCCGTCGGGAT < 1:449411/217‑1 GCGTTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAG‑G‑‑TGGAG‑‑‑ACTTTGCCATCGCGCTGGGGCTGGCGCTTGGGAAGGCGTACTGATGAACCCGCCAATTAATTTTTTGC < 1:209353/135‑1 GCGTTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAG‑G‑‑TGGAG‑‑‑ACTTTGCCATCGCGCTGGGGCTGGCGCTTGGGAAGGCGTACTGATGAACCAGCCAATTAATTTTTTGCCCTGGCGACAG < 1:565635/146‑1 GCGTTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAG‑G‑‑TGGAG‑‑‑ACTTTGCCATCGCGCTGGGGCTGGC < 2:20818/92‑1 GCGTTCCCTGCTGCCAGCTTATCGTTATCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAG‑G‑‑TGGAG‑‑‑ACTTTGCCATCGCGCTGGGGCTGGCGCTTGGGAAGGCGTACTGATGAACCCGCCAATTAATTTTTTGCCCTGGCGACAGCAACGCCGGACCGCTTTTCTGCGTTTCTGGTTGCTGATGTTCGTTGCGCCTCTGCTGCTGGCCGTCGGGATAA < 2:42260/219‑1 GTTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAG‑G‑‑TGGAG‑‑‑ACTTTGCCATCGCGCTGGGGCTGGCGCTTGGGAAGGCGTACTGATGAACCCGCCAATTAATTTTTTGCCCTGGCGACAGCAACGCCGGACCGCTTTTCTGCGTTTCTGGTTGCTGATGTTCGTTGCGCCTCTGCTGCTGGCCGTCGGGAT < 2:348741/215‑1 TGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAG‑G‑‑TGGAG‑‑‑ACTTTGCCAGCGCGCTGGGGCTGGCGCTTGGGAAGGCGTACTGATGAACCCGACAATTAATTTTTTGCCCTGGCGACAGCAACGCCGGACCGCTTTTCTGCGTTTCTGGTTGCTGATGTTCGTTGCGCCTCTGCTGCTGGCCGTCGGGATAACGCCAATACTGCGTCTGACAGGCAGCGCCGAAGCGCGCATAGACGCAGTTTTGCTTCAGGCGGAACA < 1:14584/275‑1 tTAAAAGCGCCGCCAG‑G‑‑TGGAG‑‑‑ACTTTGCCATCGCGCTGGGGCTGGCGCTTGGGAAGGCGTACTGATGAACCCGCCAATTAATTTTTTGCCCTGGCGACAGCAACGCCGGACCGCTTTTCTGCGTTTCTGGTTGCTGATGTTCGTTGCGCCTCTGCGGCTGGCCGGCGGG > 2:485787/2‑170 GTAAAAGCGCCGCCAG‑G‑‑TGGAG‑‑‑ACTTTGCCATCGCGCTGGGGCTGGCGCTTGGGAAGGCGTACTGATGAACCCGCCAATTAATTTTTTGCCCTGGCGACAGCAACGCCGGACCGCTTTTCTGCGTTTCTGGTTGCTGATGTTCGTTGCGCCTCTGCTGCTGGCCGTCG > 1:292327/1‑168 AAGCGCCGCCAG‑G‑‑TGGAG‑‑‑ACTTTGCCATCGCGCTGGGGCTGGCGCTTGGGAAGGCGTACTGATGAACCCGCCAATTAATTTTTTGCCCTGGCGACAGCAACGCCGGACCGCTTTTCTGCGTTTCTGGTTGCTGATGTTCGTTGCGCCTCTGCTGCTGGCCGTCGGGAT < 2:292321/168‑1 AAGCGCCGCCAG‑G‑‑TGGAG‑‑‑ACTTTGCCATCGCGCTGGGGCTGGCGCTTGGGAAGGCGTACTGATGAACCCGCCAATTAATTTTTTGCCCTGGCGACAGCAACGCCGGACCGCTTTTCTGCGTTTCTGGTTGCTGATGTTCGTAGCGCTTCTGCTGCTGGCCGTCGGGATAA < 1:485794/170‑1 CCAG‑T‑‑TGGAG‑‑‑ACTTTGCCATCGCGCTGGGGCTGGCGCTTGGGAAGGCGTACTGATGAACCCGCCAATTAATTTTTTGCCCTGGCGACAGCAACGCCGTACCGCTTTTCTGCGTTTCTGGTTGCTGATGTTCGTTGCGCCTCTGCTGCTGGCCGTCGGGATAACGCTAATACTGCGTCTGACAGGCAGCGCCGAAGCGCGCATAGACGCAGTTTTGCTTCAGGCGGAACAACAACTCGCCCGCAGCTTACAGATAACGAAGCCACGTTTGCTGGAG < 1:386788/275‑1 TTCTAGTGCGTTTAACGCGGTAATGCTTGTTGTCAGCCCCTTGATCTCCAGCGTTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3514918‑3515028‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgccag‑G‑‑TGGAG‑‑‑ACTTTGCCATCGCGCTGGGGCTGGCGCTTGGGAAGGCGTACTGATGAACCCGCCAATTAATTTTTTGCCCTGGCGACAGCAACGCCGGACCGCTTTTCTGCGTTTCTGGTTGCTGATGTTCGTTGCGCCTCTGCTGCTGGCCGTCGGGATAACGCTAATACTGCGTCTGACAGGCAGCGCCGAAGCGCGCATAGACGCAGTTTTGCTTCAGGCGGAACAACAACTCGCCCGCAGCTTACAGATAACGAAGCCACGTTTGCTGGAG < CP009273/3515380‑3515110 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |