New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3515028	32 (0.830)	24 (0.660)	10/296	NT	44.8%	coding (304/540 nt)	hofN	DNA catabolic putative fimbrial assembly protein
	?	CP009273	= 3515380	29 (0.800)					coding (731/780 nt)	hofM	DNA catabolic putative pilus assembly protein

GCGGAGGCGGGGTGATGTGGCGAACCACCAGTCAAAGAACATGTTCATCGCTAACCTTCCTTGTTAACTGATACTCAAATTGCCAGCGTCCCTGCGCATCCTGCTGCGTGGCTCCCCGCTGATTGAGATGAAAAGATGCATCCTGGCGGAGTGACGTTTCTAGTGCGTTTAACGCGGTAATGCTTGTTGTCAGCCCCTTGATCTCCAGCG‑TTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGTAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCGTCTATGCGCGCTTCGGCGCTGCCTGTCAGACGCAGTATTAGCGTTATCCCGACGGCCAGCAGCAGAGGCGCAACGAACATCAGCAACCAGAAACGCAGAAAAGCGGTCCGGCGTTGCTGT  >  CP009273/3514761‑3515299                                                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                                                gCGGAGGCGGGGTGATGTGGCGCACCACCAGGCAAAGAACATGTTCATCGCTAACCTTCCTTGTGAACTGATACTCAAATTGCCAGCGTCCCTCCTCATCCTGCTGCGTGGCTCCCCGCTGATTGAGATGAAAAGGTGAAGCCTGGCGGAGGGACGTCTCTAGTTCGTTTAAACCGGTAATGCTTGGTTTACGCCCCTGAATCACCCGCG‑TTCCCTGCCGCCAGCCTACCATTGCCACCCAGGCGTACTCGGGTACACGCTCCTCCAGTGCtt                                                                                                                                                                                                                                                                            >  2:632325/1‑273 (MQ=255)           ggTGATGTGGCGAACCACCAGTCAAAGAACATGTTCATCGCTAACCTTCCTTGTTAACTGATACTCAAATTGCCAGCGTCCCTGCGCATCCTGCTGCGTGGCTCCCCGCTGATTGAGATGAAAAGATGCATCCTGGCGGAGTGACGTTTCTAGTGCGTTTAACGCGGTAATGCTTGTTGTCAGCCCCTTGATCTCCAGCG‑TTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGAtt                                                                                                                                                                                                                                                                >  1:314879/1‑275 (MQ=255)                                                           ccttGTTAACTGATACTCAAATTGCCAGCGTCCCTGCGCATCCTGCTGCGTGGCTCCCCGCTGATTGAGATGAAAAGATGCATCCTGGCGGAGTGACGTTTCTAGTGCGTTTAACGCGGTAATGCTTGTTGTCAGCCCCTTGATCTCCAGCG‑TTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAgc                                                                                                                                                                                                                                                                       >  1:385835/1‑220 (MQ=255)                                                               gTTAACTGATACTCAAATTGCCAGCGTCCCTGCGCATCCTGCTGCGTGGCTCCCCGCTGATTGAGATGAAAAGATGCATCCTGGCGGAGTGACGTTTCTAGTGCGTTTAACGCGGTAATGCTTGTTGTCAGCCCCTTGATCTCCAGCG‑TTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAg                                                                                                                                                                                                                                                                   <  2:385829/220‑1 (MQ=255)                                                                                                    ccTGCTGCGTGGCTCCCCGCTGATTGAGATGAAAAGATGCATCCTGGCGGAGTGACGTTTCTAGTGCGTTTAACGCGGTAATGCTTGTTGTCAGCCCCTTGATCTCCAGCG‑TTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTcc                                                                                                                                                                                                                                                                          >  2:324977/1‑176 (MQ=255)                                                                                                        ctgcGTGGCTCCCCGCTGATTGAGATGAAAAGATGCATCCTGGCGGAGTGACGTTTCTAGTGCGTTTAACGCGGTAATGCTTGTTGTCAGCCCCTTGATCTCCAGCG‑TTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAgcg                                                                                                                                                                                                                                                                      <  1:324983/176‑1 (MQ=255)                                                                                                                cTCCCCGCTGATTGAGATGAAAAGATGCATCCTGGCGGAGTGACGTTTCTAGTGCGTTTAACGCGGTAATGCTTGTTGTCAGCCCCTTGATCTCCAGCG‑TTCCCTGCTGCCAGCTTATCGTTGTCAGCCATGCGTGCTCGGGTAAAGGCGCCGCCAGTTCTTCCGTCGCAGATTGCCAGTAGCGGGGAAATTGTCGCTGGCGCCGCCGTCGCGAACGCTGTCGGCGAACCTGGTGTGGCCGCAGCCAACGGGGGGTCTTGCTCTGTATGCttg                                                                                                                                                             >  2:302360/1‑271 (MQ=255)                                                                                                                                  taaaaGATGCATCCTGGTGGAGTTACGTTTCTAGTGCGTTTAACGCGGTAATGCTTGTTGTCAGCCCCTTGATCTCCAGCG‑TTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGTAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGcc                                                                                                                                         <  1:302366/274‑1 (MQ=255)                                                                                                                                      taaTGCATCCTCTCGGAGTGACGTTTCTAGTGCGTTTATCGCGGTAATTCTTGTTGTCATCCGCTTGATCTCCAGCG‑TTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGTAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTg                                                                                                                                       <  2:314873/271‑1 (MQ=255)                                                                                                                                             tCCTGGCGGAGTGACGTTTCTAGTGCGTTTAACGCGGTAATGCTTGTTGTCAGCCCCTTGATCTCCAGCG‑TTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGTAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTCTCTGGAAGCGGGGGGCGGGTGGGTGTTCCGccgtaaccgacac                                                                                                                              >  2:140447/1‑264 (MQ=255)                                                                                                                                                      aGTGACGTTTCTAGTGCGTTTAACGCGGTAATGCTTGTTGTCAGCCCCTTGATCTCCAGCG‑TTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGTAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTcgc                                                                                                                                                                                                             >  2:408618/1‑187 (MQ=255)                                                                                                                                                        tGACGTTTCTAGTGCGTTTAACGCGGTAATGCTTGTTGTCAGCCCCTTGATCTCCAGCG‑TTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGTAAATTGTCGCTGGCGCTGCCGTTGCGAACGTTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCGTCTATg                                                                                                                    >  1:362194/1‑274 (MQ=255)                                                                                                                                                        tGACGTTTCTAGTGCGTTTAACGCGGTAATGCTTGTTGTCAGCCCCTTGATCTCCAGCG‑TTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGGCGCGGGTAAATTNTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCGTCt                                                                                                                       >  1:602473/1‑271 (MQ=255)                                                                                                                                                          aCGTTTCTAGTGCGTTTAACGCGGTAATGCTTGTTGTCAGCCCCTTGATCTCCAGCG‑TTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGTAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTaa                                                                                                                                                                                                         <  1:408625/187‑1 (MQ=255)                                                                                                                                                              ttCTGGTGCGTNTTACGCGGTAATGCTTGTTGTCAGCCCCTTGATCTCCAGCG‑TTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGtgcttccagcgcagattgccatcgcgctggggctggcgcttgggaaggcgtactgatgaacccgccaattaattttttgccctggcgacagcaacgccggaccgcttttctgcgtttctggttgctgatgttcgttgcgcctctgctgctggccgtcgggataa                                                                                                             <  2:61153‑M1/275‑165 (MQ=255)                                                                                                                                                                  aGTGCGTTTAACGCGGTAATGCTTGTTGTCAGCCCCTTGATCTCCAGCG‑TTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGTAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCGTCTATGCGCGCTTCgg                                                                                                          <  1:140448/274‑1 (MQ=255)                                                                                                                                                                        tttAACGCGGTAATGCTTGTTGTCAGCCCCTTGATCTCCAGCG‑TTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCCGATTGCCAGTCGCGGGTAAATTGTCGCTGGCGCTGCCGTTGCGCACGCTGTTCGCGTCACTGTTGTTGCTCCAGCAAACg                                                                                                                                                                                    >  2:699825/1‑194 (MQ=255)                                                                                                                                                                            aCGCGGTAATGCTTGTTGTCAGCCCCTTGATCTCCAGCG‑TTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGTAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGc                                                                                                                                                                                <  1:699834/194‑1 (MQ=255)                                                                                                                                                                               ggtgaaTGCTTGTTGTCAGCCCCTTCAGCTCC‑GCGTTTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTGCCAGCGCAGATTGCCAGGCGCGGGTAAATTGGCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCGTCTATGCGCGCTTCGGCGCTGCCTGTCAGa                                                                                            <  2:602464/271‑1 (MQ=255)                                                                                                                                                                               cgGTAATGCTTGTTGTCAGCCCCTTGATCTCCATCG‑TTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGCTAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCTCCTGAAGCAAAACTGCGTCTATGCGCGCTTCGGCGCTGCCTGTCAGa                                                                                            <  1:681105/275‑1 (MQ=255)                                                                                                                                                                                ggTAATGCTTGTTGTCAGCCCCTTGATCTCCAGCG‑TTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGTAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCGTCTATGCGCGCTTCGGCGCTGCCTGTCAGAc                                                                                           <  1:436082/275‑1 (MQ=255)                                                                                                                                                                                      gCTTGTTGTCAGCCCCTTGATCTCCAGCG‑TTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGTAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTAGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGAAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCGTCTATGCGCGCTTCGGCGCTGCCTGTCAGACGCAGTa                                                                                     >  1:680072/1‑275 (MQ=255)                                                                                                                                                                                              tCAGCCCCTTGATATCCAGCG‑TTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGgtggagactttgccatcgcgctggggctggcgcttgggaaggcgtactgatgaacccgccaattaattttttgccctggcgagagcaacgccggaccgcttttctgcgtttctggttgctgatgatcgttgcgcgtcagatgatggccgtcgggataaagcgaatacgtcgtatgacaggcatcgccggagggcgg                                                                             >  2:14584‑M1/1‑79 (MQ=255)                                                                                                                                                                                                            tcCAGCG‑TTCCCTGCTGCCCGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGgtggagactttgccatcgcgctggggctggcgcttgggaaggcgtactgatgaacccgccaattaattttttgccctggcgacagcaacgccggaccgcttttctgcgtttctggttgctgatgttcgttgcgcctctgctgctggccgtcggg                                                                                                                       >  1:579743‑M1/1‑65 (MQ=255)                                                                                                                                                                                                            tcCAGCG‑TTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGgtggagactttgccatcgcgctggggctggcgcttgggaaggcgtactgctgaacccgccaattaattttttgccctggcgacagcaacgccggaccgcttttctgcgtttctggttgctgatgttcgttgcgcctctgctgctggccgtcg                                                                                                                         >  2:56291‑M1/1‑65 (MQ=255)                                                                                                                                                                                                            tcCAGCG‑TTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGgtggagactttgccatcgcgctggggctggcgcttgggaaggcgtactgatgaacccgccaattaattttttgccctggcgacagcaacgccggaccgcttttctgcgtttctggttgctgatgttcgttgcgcctctgctgctggccgtcg                                                                                                                         >  2:449404‑M1/1‑65 (MQ=255)                                                                                                                                                                                                            tcCAGCG‑TTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGgtggagactttgccatcgcgctggggctggcgcttgggaaggcgtactgatgaacccgccaattaattttttgccctggcgacagcaacgccggaccgcttttctgcgtttctggttgctgatgttcgttgcgcctctgctgctggccgtcg                                                                                                                         >  1:445745‑M1/1‑65 (MQ=255)                                                                                                                                                                                                            tcCAGCG‑TTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGgtggagactttgccatcgcgctggggctggcgcttgggaaggcgtactgatgaacccgccaattaattttttgccctggcg                                                                                                                                                                                                >  2:565626‑M1/1‑65 (MQ=255)                                                                                                                                                                                                            tcCAGCG‑TTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGgtggagactttgccatcgcgctggggctggcgcttgggaaggcgtactgatgaacccgccaattaatttt                                                                                                                                                                                                           >  2:209349‑M1/1‑65 (MQ=255)                                                                                                                                                                                                            tcCAGCG‑TTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGgtggagactttgccatcgcgctggggc                                                                                                                                                                                                                                                      >  1:20818‑M1/1‑65 (MQ=255)                                                                                                                                                                                                            tcCAGCG‑TTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGTAAATTGTCGCTGGCCCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAACCGTGGCTTCGTTATATGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCGTCTATGCCCGCTTCGGCGCTGCCTGTCAGACGAAATATTATCGTTATCCCGACGGCca                                                                >  1:448665/1‑274 (MQ=255)                                                                                                                                                                                                            tcCAGCG‑TTCCCTGCTGCCAGCTTATCGTTATCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGgtggagactttgccatcgcgctggggctggcgcttgggaaggcgtactgatgaacccgccaattaattttttgccctggcgacagcaacgccggaccgcttttctgcgtttctggttgctgatgttcgttgcgcctctgctgctggccgtcggg                                                                                                                       >  1:42260‑M1/1‑65 (MQ=255)                                                                                                                                                                                                             ctatgagagcgtggctgaCCGCTTTGCGTTGTCAGTCAGGCGTGCTCGTGTAATAGCGCCGCCAGTGCTTCCAGCCCAGATTGCCAGTCGCGGGTACATTGTCGCTGGCGCTGCCGTGGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCGTCTATGCGCGCTTCGGCGCTGCCTGTCAGACGCAGTATTAGCGTTATCCCGACGGCca                                                                <  1:25359/261‑1 (MQ=255)                                                                                                                                                                                                              cAGCG‑TTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGgtggagactttgccatcgcgctggggctggcgcttgggaaggcgtactgatgaacccgccaattaattttttgccctggcgacagcaacgccggaccgcttttctgcgtttctggttgctgatgttcgttgcgcctctgctgctggccgtcg                                                                                                                         >  1:348747‑M1/1‑63 (MQ=255)                                                                                                                                                                                                                gCG‑TTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGgtggagactttgccatcgcgctggggctggcgcttgggaaggcgtactgatgaacccgccaattaattttttgccctggcgacagcaacgccggaccgcttttctgcgtttctggttgctgatgttcgttgcgcctctgctgctggccgtcgggataa                                                                                                                   <  2:579734‑M1/219‑159 (MQ=255)                                                                                                                                                                                                                gCG‑TTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGgtggagactttgccatcgcgctggggctggcgcttgggaaggcgtactgatgaacccgccaattaattttttgccctggcgacagcaacgccggaccgcttttctgcgtttctggttgctgatgttcgttgcgcctctgctgctggccgtcgggat                                                                                                                     <  2:445738‑M1/217‑157 (MQ=255)                                                                                                                                                                                                                gCG‑TTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGgtggagactttgccatcgcgctggggctggcgcttgggaaggcgtactgatgaacccgccaattaattttttgccctggcgacagcaacgccggaccgcttttctgcgtttctggttgctgatgttcgttgcgcctctgctgctggccgtcgggat                                                                                                                     <  1:449411‑M1/217‑157 (MQ=255)                                                                                                                                                                                                                gCG‑TTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGgtggagactttgccatcgcgctggggctggcgcttgggaaggcgtactgatgaacccgccaattaattttttgccctggcgacagcaacgccggaccgcttttctgcgtttctggttgctgatgttcgttgcgcctctgctgctggccgtcgggat                                                                                                                     <  1:56291‑M1/217‑157 (MQ=255)                                                                                                                                                                                                                gCG‑TTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGgtggagactttgccatcgcgctggggctggcgcttgggaaggcgtactgatgaacccgccaattaattttttgc                                                                                                                                                                                                       <  1:209353‑M1/135‑75 (MQ=255)                                                                                                                                                                                                                gCG‑TTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGgtggagactttgccatcgcgctggggctggcgcttgggaaggcgtactgatgaaccagccaattaattttttgccctggcgacag                                                                                                                                                                                            <  1:565635‑M1/146‑86 (MQ=255)                                                                                                                                                                                                                gCG‑TTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGgtggagactttgccatcgcgctggggctggc                                                                                                                                                                                                                                                  <  2:20818‑M1/92‑32 (MQ=255)                                                                                                                                                                                                                gCG‑TTCCCTGCTGCCAGCTTATCGTTATCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGgtggagactttgccatcgcgctggggctggcgcttgggaaggcgtactgatgaacccgccaattaattttttgccctggcgacagcaacgccggaccgcttttctgcgtttctggttgctgatgttcgttgcgcctctgctgctggccgtcgggataa                                                                                                                   <  2:42260‑M1/219‑159 (MQ=255)                                                                                                                                                                                                                 acgtccactgctgccagcttGTCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGgtggagactttgccatcgcgctggggctggcgcttgggaaggcgtactgatgaacccgccaattaattttttgccctggcgacagcaacgccggaccgcttttctgcgtttctggttgctgatgttcgttgcgcctctgctgctggccgtcgggat                                                                                                                     <  2:358076‑M1/210‑157 (MQ=255)                                                                                                                                                                                                                  g‑TTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGgtggagactttgccatcgcgctggggctggcgcttgggaaggcgtactgatgaacccgccaattaattttttgccctggcgacagcaacgccggaccgcttttctgcgtttctggttgctgatgttcgttgcgcctctgctgctggccgtcgggat                                                                                                                     <  2:348741‑M1/215‑157 (MQ=255)                                                                                                                                                                                                                    ttCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGcc                                                                                                                                                                                                                                                             >  1:586133/1‑78 (MQ=255)                                                                                                                                                                                                                        ctgctgCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTc                                                                                                                                                                                                                                                         <  2:586124/78‑1 (MQ=255)                                                                                                                                                                                                                            tgcCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGgtggagactttgccagcgcgctggggctggcgcttgggaaggcgtactgatgaacccgacaattaattttttgccctggcgacagcaacgccggaccgcttttctgcgtttctggttgctgatgttcgttgcgcctctgctgctggccgtcgggataacgccaatactgcgtctgacaggcagcgccgaagcgcgcatagacgcagttttgcttcaggcggaaca                                                <  1:14584‑M1/275‑226 (MQ=255)                                                                                                                                                                                                                                                 cAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGTAAATTGTCGCTGGCGCTGCCGTTGCGAACNCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGGTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCGTCTATGCGCGCTTCGGCGCTGCCTGTCAGACGCAGTATTAGCGTTATCCCGACGGCCAGCAGCCGAGGCGCAACGGACATCAGCAACCAGaa                              <  1:534864/272‑1 (MQ=255)                                                                                                                                                                                                                                                 cAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGTAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCGTCTATGCGCGCTTCGGCGCTGCCTGTCAGACGCa                                                                                        >  2:88153/1‑214 (MQ=255)                                                                                                                                                                                                                                                     cGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGTAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCGTCTATGCGCGCTTCGGCGCTGCCTGTCAGACGCAGTAt                                                                                    <  1:88154/214‑1 (MQ=255)                                                                                                                                                                                                                                                              ttaAAAGCGCCGCCAGgtggagactttgccatcgcgctggggctggcgcttgggaaggcgtactgatgaacccgccaattaattttttgccctggcgacagcaacgccggaccgcttttctgcgtttctggttgctgatgttcgttgcgcctctgcggctggccggcggg                                                                                                                       >  2:485787‑M1/2‑16 (MQ=255)                                                                                                                                                                                                                                                              gTAAAAGCGCCGCCAGgtggagactttgccatcgcgctggggctggcgcttgggaaggcgtactgatgaacccgccaattaattttttgccctggcgacagcaacgccggaccgcttttctgcgtttctggttgctgatgttcgttgcgcctctgctgctggccgtcg                                                                                                                         >  1:292327‑M1/1‑16 (MQ=255)                                                                                                                                                                                                                                                                  aaGCGCCGCCAGgtggagactttgccatcgcgctggggctggcgcttgggaaggcgtactgatgaacccgccaattaattttttgccctggcgacagcaacgccggaccgcttttctgcgtttctggttgctgatgttcgttgcgcctctgctgctggccgtcgggat                                                                                                                     <  2:292321‑M1/168‑157 (MQ=255)                                                                                                                                                                                                                                                                  aaGCGCCGCCAGgtggagactttgccatcgcgctggggctggcgcttgggaaggcgtactgatgaacccgccaattaattttttgccctggcgacagcaacgccggaccgcttttctgcgtttctggttgctgatgttcgtagcgcttctgctgctggccgtcgggataa                                                                                                                   <  1:485794‑M1/170‑159 (MQ=255)                                                                                                                                                                                                                                                                    gcgcCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGTAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCGTCTATGCGCGCTTCGGCGCTGCCTGTCAGACGCAGTATTAGCGTTATCCCGACGGCCAGCAGCAGAGGCGCAACGAACATCAGCACCCAGAAACGCAGAAAAGCGGTCCGGCg         <  1:419615/274‑1 (MQ=255)                                                                                                                                                                                                                                                                      gccgccAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGTAAATTGTCGCTGGCGCTGCCGTTg                                                                                                                                                                                                                           >  2:109383/1‑62 (MQ=255)                                                                                                                                                                                                                                                                        cgccAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGTAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCt                                                                                                                                                                               >  2:608626/1‑104 (MQ=255)                                                                                                                                                                                                                                                                        cgccAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGTAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCg                                                                                                                                                            >  2:184635/1‑123 (MQ=255)                                                                                                                                                                                                                                                                        cgccAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGTAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCGTCTa                                                                                                                      >  2:473858/1‑161 (MQ=255)                                                                                                                                                                                                                                                                          ccAGttggagactttgccatcgcgctggggctggcgcttgggaaggcgtactgatgaacccgccaattaattttttgccctggcgacagcaacgccgtaccgcttttctgcgtttctggttgctgatgttcgttgcgcctctgctgctggccgtcgggataacgctaatactgcgtctgacaggcagcgccgaagcgcgcatagacgcagttttgcttcaggcggaacaacaactcgcccgcagcttacagataacgaagccacgtttgctggag  <  1:386788‑M1/275‑272 (MQ=255)                                                                                                                                                                                                                                                                          ccAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGTAAATTGTCGCTGGCGCTGCCGTTGCGaa                                                                                                                                                                                                                       <  1:109384/62‑1 (MQ=255)                                                                                                                                                                                                                                                                            aGTGCTTCCAGCGCAGATTGCCAGTCGCGGGTAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGt                                                                                                                                                                           <  1:608635/104‑1 (MQ=255)                                                                                                                                                                                                                                                                            aGTGCTTCCAGCGCAGATTGCCAGTCGCGGGTAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGGGCg                                                                                                                                                        <  1:184638/123‑1 (MQ=255)                                                                                                                                                                                                                                                                            aGTGCTTCCAGCGCAGATTGCCAGTCGCGGGTAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCGTCTATgcg                                                                                                                  <  1:473865/161‑1 (MQ=255)                                                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                                                GCGGAGGCGGGGTGATGTGGCGAACCACCAGTCAAAGAACATGTTCATCGCTAACCTTCCTTGTTAACTGATACTCAAATTGCCAGCGTCCCTGCGCATCCTGCTGCGTGGCTCCCCGCTGATTGAGATGAAAAGATGCATCCTGGCGGAGTGACGTTTCTAGTGCGTTTAACGCGGTAATGCTTGTTGTCAGCCCCTTGATCTCCAGCG‑TTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGTAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCGTCTATGCGCGCTTCGGCGCTGCCTGTCAGACGCAGTATTAGCGTTATCCCGACGGCCAGCAGCAGAGGCGCAACGAACATCAGCAACCAGAAACGCAGAAAAGCGGTCCGGCGTTGCTGT  >  CP009273/3514761‑3515299

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.