New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3564632 =	44 (1.140)	9 (0.250)	6/300	NT	17.3%	coding (48/1974 nt)	glgX	glycogen debranching enzyme
	?	CP009273	3564798 =	44 (1.200)					coding (2065/2187 nt)	glgB	1,4‑alpha‑glucan branching enzyme

TCACTAAGCCTGACGCTACCACCGCTGGCCACTATCTGGCTGGTTCGGGAGGCAGAATGACACAACTCGCCATTGGCAAACCCGCTCCCCTCGGCGCGCATTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/3564735‑3564632 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcattacTGCCGTGATAGTGCATGGAATCGGTATTGAGGATTTCACGCCATTTGCCCGGCTGGTTTATGCCGAAGCGATAATCATGACGCGGTACCGGCGTAAAGTTACTGGCAACGATGATTTCGTTACCCTCTTTATCGCGACGCACAAAGATCAGCACCGAGCGTTCTTTGTCATCCACCACCAGCCATTCAAAGCCGTACGGGTCAAAATCCAGTTCATGCATTGCTTTATGGTGGCGGTAGGTGAGGTTCAGATCGCGCACCAGACGCTGGACA  >  CP009273/3564798‑3565069                                                                                                                                                                                                                                                                                                                                                                                          TCACTAAGTCTGACGCTACCACCGCTGGCCACTATCTGGCTGGTTCGGGAGGCAGAATGACACAACTCGCCATTGGCAAACCCGCTCCCCTCGGCGCGCAT                                                                                                                                                                                                                                                                                     >  1:584762/1‑101        GCCTGACGCTACCACCGCTGGCCACTATCTGGCTGGTTCGGGAGGCAGAATGACACAACTCGCCATTGGCAAACCCGCTCCCCTCGGCGCGCATTACTGCCGTGATAGTGCATGGAATCGGTATTGAGGATTTCACGCCATTTGCCCGGCTGGTTTATGCCGAAGCGATAATCATGACGC                                                                                                                                                                                               >  2:612186/1‑180            GACGCTACCACCGCTGGCCACTATCTGGCTGGTTCGGGAGGCAGAATGACACAACTCGCCATTGGCAAACCCGCTCCCCTCGGCGCGCATTACTGCCGTGATAGTGCATGGAATCGGTATTGAGGATTTCACGCCATTTGCCCGGCTGGTTTATGCCGAAGCGATAATCATGACGCGGTA                                                                                                                                                                                           <  1:612195/180‑1                         CTGGCCACTATCTGGCTGGTTCGGGAGGCAGAATGACACAACTCGCCATTGGCAAACCCGCTCCCCTCGGCGCGCATTACTGCCGTGATAGTGCATGGAATCGGTATTGAGGATTTCACGCCATTTGCCCGGCTGGTTTATGCCGAGACGATAATCATNACGCGGTACCGGCGTAAAGTTACTGGCAACGATGATTTCGTTACCCTC                                                                                                                                                   >  1:650469/1‑207                         CTGGCCACTATCTGGCTGGTTCGGGAGGCAGAATGACACAACTCGCCATTGGCAAACCCGCTCCCCTCGGCGCGCATTACTGCCGTGATAGTGCATGGAATCGGTATTGAGGATTTCACGCCATTTGCCCGGCTGGTTTATGCCGAAGCGATAATCATGACGCGGTACCGGCGTAAAGTTACTGGCAACGATGATTTCGTTACCCTCTTTATCGCGAAGCACAAAGATCAGCACCGAACGTTCTTTGTCATCCCCCACCAGCCATTCAAAGCCG                                                                                >  1:246921/1‑274                         CTGGCCACTATCTGGCTGGTTCGGGAGGCAGAATGACACAACTCGCCATTGGCAAACCCGCTCCCCTCGGCGCGCATTACTGCCGTGATAGTGCATGGAATCGGTATTGAGGATTTCACGCCATTTGCCCGGCTGGTTTATGCCGAAGCGATAATCATGACGCGG                                                                                                                                                                                             >  1:297758/1‑165                         CTGGCCACTATCTGGCTGGTTCGGGAGGCAGAATGACACAACTCGCCATTGGCAAACCCGCTCCCCTCGGCGCGCATTACTGCCGTGATAGTGCATGGAATCGGTATTGAGGATTTCACGCCATTTGC                                                                                                                                                                                                                                  >  2:259908/1‑128                             CCACTATCTGGCTGGTTCGGGAGGCAGAATGACACAACTCTCCATTGGCAAACCCGCTCCCCTCGGCGCGCATTACTGCCGTGATAGTGCATGGAATCGGTATTGAGGATTTCACGCCATTTGCCCGGCTGGT                                                                                                                                                                                                                         <  1:344014/133‑1                             CCACTATCTGGCTGGTTCGGGAGGCAGAATGACACAACTCGCCATTGGCAAACCCGCTCCCCTCGGCGCGCATTACTGCCGTGATAGTGCATGGAATCGGTATTGAGGATTTCACGCCATTTGCCCGTCTGGTTTATGCCGAAGCGATAATCATGACGCGGTACC                                                                                                                                                                                         <  2:297752/165‑1                             CCACTATCTGGCTGGTTCGGGAGGCAGAATGACACAACTCGCCATTGGCAAACCCGCTCCCCTCGGCGCGCATTACTGCCGTGATAGTGCATGGAATCGGTATTGAGGATTTCACGCCATTTGCCCGG                                                                                                                                                                                                                              <  1:259913/128‑1                                                                                                      TACTGCCGTGATAGTGCATGGAATCGGTATTGAGGATTTCACGCCATTTGCCCGGCTGGTTTATGCCGAAGCGATAATCATGACGCGGTACCGGCGTAAAGTTACTGGCAACGATGATTTCGTTACCCTCTTTATCGCGACGCACAAAGATCAGCAACGAGCGTTCTTTGTCATCCACCACCAGCAATTCAAAGCCGTACGGGTCAAAATCCAGCACCTGCATTGCTTTATGGTGGCGGAAGGGGGGGTTCAGACCGCGCACCAGNCGCTGGcac  >  2:277937/1‑272                                                                                                                                                                                                                                                                                                                                                                                          TCACTAAGCCTGACGCTACCACCGCTGGCCACTATCTGGCTGGTTCGGGAGGCAGAATGACACAACTCGCCATTGGCAAACCCGCTCCCCTCGGCGCGCATTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/3564735‑3564632 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcattacTGCCGTGATAGTGCATGGAATCGGTATTGAGGATTTCACGCCATTTGCCCGGCTGGTTTATGCCGAAGCGATAATCATGACGCGGTACCGGCGTAAAGTTACTGGCAACGATGATTTCGTTACCCTCTTTATCGCGACGCACAAAGATCAGCACCGAGCGTTCTTTGTCATCCACCACCAGCCATTCAAAGCCGTACGGGTCAAAATCCAGTTCATGCATTGCTTTATGGTGGCGGTAGGTGAGGTTCAGATCGCGCACCAGACGCTGGACA  >  CP009273/3564798‑3565069

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.