New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3564632 =	44 (1.140)	9 (0.250)	6/300	NT	17.3%	coding (48/1974 nt)	glgX	glycogen debranching enzyme
	?	CP009273	3564798 =	44 (1.200)					coding (2065/2187 nt)	glgB	1,4‑alpha‑glucan branching enzyme

TATCTTTAAACTCCCCGTCAATTTGCCGCGCGCAAGGATCAATCAACAACTTCGCCGGGTTAAAGCGATGCCCCTCGGCGGGTTGCCAGGGGCCATGAACGCGATAACCATAACGCAAACCCGGGCGCGCATCCGGCAGATAACCGTGCCAAATGTCGCCACTGTGCCCTGGCAAGTCATAGCGATGTTCCTGGCCATTGGCGTCAAAGACACACAGTTCTA‑CCCGCTCGGCATGAGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGAGGGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCAGCCAGATAGTGGCCAGCGGTG‑GTAGCGTCAGGCTTAGTGAATGCTGACGACCGTGGCTGGCAATCTCATCGCTGTGTACCGTGCCGCCATTGCCTGCATTACTGCCGTGATAGTGCATGGAATCGGTATTGAGGATTTCACGCCATTTGCCCGGCTGGTTTATGCCGAAGCGATAATCATGACGCGGTACCGGCGTAAAGTTACTGGC  >  CP009273/3564361‑3564903                                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                                                 gtgccagcgnctggtgcgcggtctgaacccccccttccgccaccataaagcaatgcaggtgctggattttgacccgtacggctttgaattgctggtggtggatgacaaagaacgctcgttgctgatctttgtgcgtcgcgataaagagggtaacgaaatcatcgttgccagtaactttacgccggtaccgcgtcatgattatcgcttcggcataaaccagccgggcaaatggcgtgaaatcctcaataccgattccatgcactatcacggcaGTa                                                                                                                                                                                                                                                                                >  2:277937‑M1/273‑275 (MQ=255)        aaaCTCCCCGTCAATTTGCCGCGCGCAAGGATCAATCAACAACTTCGCCGGGTTAAAGCGATGCCCCTCGGCGGGTTGCCAGGGGCCATGAACGCGATAACCATAACGCAAACCCGGGCGCGCATCCGGCAGATAACCGTGCCAAATGTCGCAACTGTGCCCCGGCAAGTCATAGCGATGTTCCTGGCCATTGGCGTCAAAGACACACAGTGCTA‑CCCGCTCGGACTGAGGGGAGAACAGTGGGAAGTCGCCGCCCTGCCCCGCGTaactgcct                                                                                                                                                                                                                                                                         >  2:181172/1‑268 (MQ=255)              cccGTCAATTTGCCGCGCGCAAGGATCAATCAACAACTTCGCCGGGTTAAAGCGATGCCCCTCGGCGGGTTGCCAGGGGCCATGAACGCGATAACCATAACGCAAACCCGGGCGCGCATCCGGCAGATAACCGTGCCAAATGTCGCCACTGTGCCCTGGCAAGTCATAGCGATGTTCCTGGCCATTGGCGTCAAAGACACACAGTTCTA‑CCCGCTCGGCATGCGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATACGCGCCGAggg                                                                                                                                                                                                                                                                  >  1:380284/1‑275 (MQ=255)                                         attgaacaacTGCGCCGGGTTAAAGCGAGGACCCTCGGCGGGTTGACAGGGGCCATGAACGCGATAACCATAACGCAAACCCGGGCGCGCATCCGGCAGATAACCGTGCCAGATGTCGCCACTGTGCCCTGGCAAGTCATAGCGATGTTCCTGGCCATTGGCGTCAAAGACACACAGTTCTA‑CCCGCTCGGCATGAGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGAGGGGAGCGGGTTTGCCAATGGCGAGTtgtg                                                                                                                                                                                                                                       <  1:416205/271‑1 (MQ=255)                                                     cGCCGGGTTAAAGCGATGCCCCTCGGCGGGTTGCCAGGGGCCATGAACGCGATAACCATAACGCAAACCCGGGCGCGCATCCGGCAGATAACCGTGCCAAATGTCGCCACTGTGCCCTGGCAAGTCATAGCGATGTTCCTGGCCATTGGCGTCAAAGACACACAGTTCTA‑CCCGCTCGGCATGAGCGGAGAAAAGTGTGAAGTTGCCGCCCTGACCGTCGTAATGCGCGCCGAGGGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTc                                                                                                                                                                                                                           >  1:22022/1‑275 (MQ=255)                                                         tggTTAACGCCAGGCCCCGCCGCGGGTGGCAGGGGGAAATGACCGCGATACCAATAACGCAATCCCGGGTTCCCATCCGGCAGATAACCGTGCCAAATTTCGCCCCTGTGCCCTGGCAAGTCATAGCGATGTTCCTGGCCATTGGCGTCAAAGACACACAGTTCTA‑CCCGCTCGGCATGAGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGAGGGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGa                                                                                                                                                                                                                       <  2:22022/274‑1 (MQ=255)                                                               aaGCTATGCCCCTCGGCGGGTTGCCAGGGGCCATGAACGCGATAACCATAACGCAAACCCCGGCGCGCATCCGGCAGATAACCGTGCCAAATGTCGCCACTGTGCCCTGGCAAGTCATAGCGNTGTTCCTGGCCATTGGCGTCAAAGACACACAGTTCTA‑CCCGCTCGGCATGAGCGGAGAAAAGTGTGAAGTTGACGACCTGACCGTCGTAATGCGCGCCGAGGGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAAccagc                                                                                                                                                                                                                 <  1:604319/275‑1 (MQ=255)                                                                               cggctttgaatggctggtgggggatgacaaagaacgttcggtgctgatctttgtgcttcgcgataaagagggtaacgaaatcatcgttgccagtaactttacgccggtaccgcgtcatgattatcgcttcggcataaaccagccgggcaaatggcgtgaaatcctcaataccgattccatgcactatcacggcaGTAATGCGCGCCGAGGGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCAGCCAGATAGTGGCCAg                                                                                                                                                                                                   >  1:246921‑M1/195‑274 (MQ=255)                                                                                  gTTGCCAGGGGCCATGAACGCGATAACCATAACGCAAACCCGGGCGCGCATCCGGCAGATAACCGTGCCAAATGTCGCCACTGTGCCCTGGCAAGTCATAGCGATGTTCCTGGCCATTGGCGTCAAAGACACACAGTTCGA‑CCCGCTCGGCANGAGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGAGGGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCAGCCAGATAGTTGCCAGc                                                                                                                                                                                                  >  1:618063/1‑271 (MQ=255)                                                                                                     gcgATAACCATAACGCAAACCCGGGCGCGCATCCGGCAGATAACCGTGCCAAATGTCGCCACTGTGCCCTGGCAAGTCATAGCGATGTTCCTGGCCATTGGCGTCAAAGACACACAGTTCTA‑CCCGCTCGGCATGAGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCNAGGGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCCGCCAGATAGTGGCCAGCGGTG‑GTAGCGTCAGGCTTAGTGa                                                                                                                                                                          >  1:538344/1‑275 (MQ=255)                                                                                                      cgATAACTATAACGTAAACCCGGGCGCGCATCCGGTGTATAACCATGCCAAATGTCGCCACTGTGCCCTGGCAAGGCATAGCCACGTTCCTGAGCTTACGCGTCACATCAACACAGTTCTA‑CCCGCTCGGCACGAACGGCGAAATGTGTTACCTTGACGCCATCACCGTCTGCCTACGCGCCAACGGGAGAGGGTTTGCCAATGGCCCGTTTTTTCATTATGCACACCGAACCAGCACGATAGGGGCCCG‑GCTGTGTAGCGCCAGGCTTCGTgca                                                                                                                                                                         >  2:300944/1‑273 (MQ=255)                                                                                                                 aCGCAAACCCGGGCGCGCATCCGGCAGATAACCGTGCCAAATGTCGCCACTGTGCCCTGGCAAGTCATAGCGATGTTCCTGGCCATTGGCGTCAACGACACACAGTTCTA‑CCCGCTCGGCATGAGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGAGGGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCAGCCAGATAGTGGCGAGCGGTG‑GTAGCGTCCGGCTTCGGGAATGCTgacgaa                                                                                                                                                               >  2:190656/1‑273 (MQ=255)                                                                                                                            ggCGCGCATCCGGCAGATAACCGTGCCAAATGTCGCCACTGTGCCCTGGCAAGTCATAGCGATGTTCCTGGCCATTGGCGTCAAAGACACACAGTTCTA‑CCCGCTCGGCATGAGCGGAGAAAAGTGTGAAGTTGACGCCCTGACcgtcg                                                                                                                                                                                                                                                                                  >  1:436533/1‑149 (MQ=255)                                                                                                                                cgcATCCGGCAGATAACCGTGCCAAATGTCGCCACTGTGCCCTGGCAAGTCATAGCGATGTTCCTGGCCATTGGCGTCGAAGACACACAGTTCTA‑CCCGCTCGGCATGAGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGTAAt                                                                                                                                                                                                                                                                              <  2:436526/149‑1 (MQ=255)                                                                                                                                 gcATCCGGCAGATAACCGTGCCAAATGTCGCCACTGTGCCCTGGCAAGTCATAGCGATGTTCCTGGCCATTGGCGTCAAAGACACACAGTTCTA‑CCCGCTCGGCATGAGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGAGGGGAGCGGGTGTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCAGCCAGATAGTGGCCAGCGGTG‑GTAGCGTCAGGCTTAGTGAATGCTGACGACCGTGGCTGGCAATCTCa                                                                                                                                              <  1:190659/275‑1 (MQ=255)                                                                                                                                 ccacgccgccanaaaCCGTGGCAAATGTCGCCCCTGTGCCCTGGCAAGTCGTGGCGATGTTCCTGGCCATTGGCGTCAAAGACACACAGTTCTA‑CCCGCTCGGCATGGGCGGAGAAAAGTGTGAAGTTGACGCCCTGCCCGTCGTAATGCGCGCCGAGGGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCAGCCAGATAGTGGCCAGCGGTG‑GTAGCGTCAGGCTTAGTGAATGCTGACGACCGTGGCTGGCAATCTCa                                                                                                                                              <  2:66850/262‑1 (MQ=255)                                                                                                                                             tAACCGTGCCAAATGTCGCCACTGTGCCATTGCAAGTCATAGCGATGTTCCTGGCCATTGGCGTCAAAGACACACAGTTCTA‑CCCGCTCGGCATGAGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGAGGGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGNCTCCCGAACCAGCCAGATAGTGGCCAGCGGTG‑GTAGCGTc                                                                                                                                                                                     >  1:498333/1‑224 (MQ=255)                                                                                                                                                 cGTGCCAATGGTCGCCACTGTGCCCTGGCAAGTCATAGCGATGTTCCTGGCCATTGGCGTCAAAGACACACAGTTCTA‑CCCGCTCGGCATGAGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGAGGGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCAGCCAGATAGTGGCCAGCGGTG‑GTAGCGTCAGGc                                                                                                                                                                                 <  2:498326/224‑1 (MQ=255)                                                                                                                                                  gagggtaacgaaatcatcgttgccagtaactttacgccggtaccgcgtnatgattatcgtctcggcataaaccagccgggcaaatggcgtgaaatcctcaataccgattccatgcactatcacggcaGTAATGCGCGCCGAGGGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCAGCCAGATAGTGGCCAg                                                                                                                                                                                                   >  1:650469‑M1/128‑207 (MQ=255)                                                                                                                                                   tGCCAAATGTCGCCACTGTGCCCTGGCAAGTCATAGCGATGTTCCTGGCCATTGGCGTCAAAGACACACAGTTCTA‑CCCGCTCGGCATGAGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGCGGGGAGCGGGGTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCAGACAGATAGTGGCGAGCGGGG‑GTAGCGGCAGGCCTAGGGAATGCTGACGACAGTGGCCGTCATACCCATCGCtttttttccttcct                                                                                                                            >  2:541776/1‑262 (MQ=255)                                                                                                                                                     ccAAATGTCGCCACTGTGCCCTGGCAAGTCATAGCGATGTTCCTGGCCATTGGCGTCAAAGACACACAGTTCTACCCCGCTCGGCATGAGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGAGGGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCAGCCAGATAGTGGCCAGCGGTG‑GTAGCGTCAGGCTTAGTGAATGCTGACGACCGtggc                                                                                                                                                         >  1:159777/1‑245 (MQ=255)                                                                                                                                                         aTGTCGCCACTGTGCCCTGGCAAGTCATAGCGATGTTCCTGGCCATTGGCGTCAAAGACACACAGTTCTACCCCGCTCGGCATGAGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGAGGGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCAGCCAGATAGTGGCCAGCGGTG‑GTAGCGTCAGGCTTAGTGAATGCTGACGACCGtggctggc                                                                                                                                                     <  2:159774/245‑1 (MQ=255)                                                                                                                                                              gCCACTGTGCCCTGGCAAGTCATAGCGATGTTCCTGGCCATTGGCGTCAAAGACACACAGTTCTA‑CCCGCTCGGCATGAGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGAGGGGAGCGGGTTTGCCAATGGCGAGTTGTGTc                                                                                                                                                                                                                                     >  2:327701/1‑160 (MQ=255)                                                                                                                                                                  cTGTGCCCTGGCAAGTCATAGCGATGTTCCTGGCCATTGGCGTCAAAGACACACAGTTCTA‑CCCGCTCGGCATGAGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGAGGGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTc                                                                                                                                                                                                                                 <  1:327707/160‑1 (MQ=255)                                                                                                                                                                     tgaccTGGCAATTTATCGCTATGTTCATGGCCATTGGCCGCAAAGACACACAGTTCTA‑CCCGCTCGGCATGAGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGAGGGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCAGCCAGATAGTGGCCAGCGGTG‑GTAGCGTCAGGCTTAGTGAATGCTGACGACCGTGGCTGGCAATCTCATCGCTGTGTACCGTGCCGCCATTGCCTGCATTACTg                                                                                                          <  1:241215/272‑1 (MQ=255)                                                                                                                                                                        ccTGGCAAGTCATAGCGATGTTCCTGGCCATTGGCGTCAAAGACACGCAGTTCTA‑CCCGCTCGGCATGAGCGGAGAAAAGTGTGAAGTTGANGCCCTGACCGTCGTAATGCGCGCCGAGGGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCAGCCAGATAGTGGCCAGCGGTG‑GTAGCGTCAGGCTTAGTGAATGCTGACGACCGTGGCTGGCAATCTCATCGCTGTGTACCGTGCCGCCATTGCCTGCATTACTGCCg                                                                                                       <  1:529709/275‑1 (MQ=255)                                                                                                                                                                            gCAAGTCATAGCGATGTTCCTGGCCATTGGCGTCAAAGACACACAGTTCTA‑CCCGCTCAGCATGAGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGAGGGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCAGCCAGATAGTGGCCAGCGGTG‑GTAGCGTCAGGCTTAGTGAATGCTGACGACCGTGGCTGGCAATCTCATCGCTGTGTACCGTGCCGCCATTGCCTGCATTACTGCCGTGAt                                                                                                   >  1:310132/1‑275 (MQ=255)                                                                                                                                                                              aaGGCATAGCGATGTTCCTGGCCATTGGCGTAAAAGACACAAAGTTCTA‑CCCGCTCGGCATGAGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGGAATGCGCGCCGAGGGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCAGCCAGATAGTGGCCAGCGGTG‑GTAGCGTCAGGCTTAGTGAATGCTGACGACCGTGGCTGGCAATCTCATCGCTGTGTACCGTGCCGCCATTGCCTGCATTACTGCCGTGATa                                                                                                  <  1:300950/274‑1 (MQ=255)                                                                                                                                                                                        ggtaccgcgtcatgattatcgcttcggcataaaccagacgggcaaatggcgtgaaatcctcaataccgattccatgcactatcacggcaGTAATGCGCGCCGAGGGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCAGCCAGATAGTgg                                                                                                                                                                                                       <  2:297752‑M1/76‑1 (MQ=255)                                                                                                                                                                                          taccgcgtcatgattatcgcttcggcataaaccagccgggcaaatggcgtgaaatcctcaataccgattccatgcactatcacggcaGTAATGCGCGCCGAGGGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCAGCCAGATAGTGGCCAGCGGTG‑GTAGCGTc                                                                                                                                                                                     <  1:612195‑M1/93‑1 (MQ=255)                                                                                                                                                                                            ccgcgtcatgattatcgcttcggcataaaccagccgggcaaatggcgtgaaatcctcaataccgattccatgcactatcacggcaGTAATGCGCGCCGAGGGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCAGCCAGATAGTGGCCAg                                                                                                                                                                                                   >  1:297758‑M1/86‑165 (MQ=255)                                                                                                                                                                                              gcgtcatgattatcgcttcggcataaaccagccgggcaaatggcgtgaaatcctcaataccgattccatgcactatcacggcaGTAATGCGCGCCGAGGGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCAGCCAGATAGTGGCCAGCGGTG‑GTAGCGTCAGGc                                                                                                                                                                                 >  2:612186‑M1/84‑180 (MQ=255)                                                                                                                                                                                                 ggCCATTGGCGTCAAAGACACACAGTTCTA‑CCCGCTCGGCATGAGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGAGGGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCAGCCAGATAGTGGCCAGCGGTG‑GTAGCGACAGGCTTAGTGAATGCTGACGACCGTGGCTGGCAATCTCATCGCTGTGTACCGTGCCGCCATTGCCTGCATTACTGCCGTGATAGTGCATGGAATCGGGATTGa                                                                              >  1:637233/1‑275 (MQ=255)                                                                                                                                                                                                      ttGGCGTCAAAGACACACAGTTCTA‑CCCGCTCGGCATGAGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGAGGGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCAGCCAGATAGTGGCCAGCGGTG‑GTAGCGTCAGGCTTAGTGAATGCTGACGACCGTGGCTGGCAAt                                                                                                                                                  >  2:205585/1‑202 (MQ=255)                                                                                                                                                                                                          cGTCAAAGACACACAGTTCTA‑CCCGCTCGGCATGAGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGAGGGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCAGCCAGATAGTGGCCAGCGGTG‑GTAGCGTCAGGCTTAGTGAATGCTGACGACCGTGGCTGGCAATCTCa                                                                                                                                              <  1:205589/202‑1 (MQ=255)                                                                                                                                                                                                                   cacacaGTTCTA‑CCCGCTCGGCATGAGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGAGGGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGaa                                                                                                                                                                                                                      >  2:707631/1‑122 (MQ=255)                                                                                                                                                                                                                       caGTTCTA‑CCCGCTCGGCATGAGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGAGGGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAAccag                                                                                                                                                                                                                  <  1:707641/122‑1 (MQ=255)                                                                                                                                                                                                                        accagccgggcaaatggcgtgaaatcctcaataccgattccatgcactatcacggcaGTAATGCGCGCCGAGGGGAGCGGGTTTGCCAATGGAGAGTTGTGTCATTCTGCCTCCCGAACCAGCCAGATAGTgg                                                                                                                                                                                                       <  1:344014‑M1/76‑1 (MQ=255)                                                                                                                                                                                                                             tA‑CCCGCTCGGCATGAGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGAGGGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCAGCCAGATAGTGGCCAGCGGTG‑GTa                                                                                                                                                                                          >  1:3964/1‑139 (MQ=255)                                                                                                                                                                                                                             ccgggcaaatggcgtgaaatcctcaataccgattccatgcactatcacggcaGTAATGCGCGCCGAGGGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCAGCCAGATAGTgg                                                                                                                                                                                                       <  1:259913‑M1/76‑1 (MQ=255)                                                                                                                                                                                                                                cccGCTCGGCATGAGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGAgg                                                                                                                                                                                                                                                                   >  2:675792/1‑65 (MQ=255)                                                                                                                                                                                                                                cccGCTCGGCATGAGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGGCGTAATGCGCGCCGAGGGGAGCGGGTTTGCCAATgg                                                                                                                                                                                                                                                >  1:104130/1‑84 (MQ=255)                                                                                                                                                                                                                                accGCTCGGCATGAGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGAGGGGAGCGGGTTTGCCAATGGCg                                                                                                                                                                                                                                              >  2:684137/2‑86 (MQ=255)                                                                                                                                                                                                                                 gcaaatggcgtgaaatcctcaataccgattccatgcactatcacggcaGTAATGCGCGCCGAGGGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCAGCCAGATAGTGGCCAg                                                                                                                                                                                                   >  2:259908‑M1/49‑128 (MQ=255)                                                                                                                                                                                                                                  cGCTCGGCATGAGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGAGGGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCAGCCAGATAGTGGCCAGCGGTG‑GTAGCGt                                                                                                                                                                                      <  2:3964/139‑1 (MQ=255)                                                                                                                                                                                                                                    cTCGGCGTGAGCGGGGAACAGTGTGAAGTTGCCGACCTGTCCGTCGTAATGCGCGCCGAGGGGAGCGGGTTTGCCAATGGCGAg                                                                                                                                                                                                                                            <  2:104129/84‑1 (MQ=255)                                                                                                                                                                                                                                    cTCGGCATGAGCGGAGAAAAGTGTTAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGAGGGGTGCGTGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAAccagcc                                                                                                                                                                                                                <  1:402546/112‑1 (MQ=255)                                                                                                                                                                                                                                    cTCGGCATGAGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGAGGGGAg                                                                                                                                                                                                                                                               <  1:675801/65‑1 (MQ=255)                                                                                                                                                                                                                                    cTCGGCATGAGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGAGGGGAGCGGGTTTGCCAATGGCGAGtt                                                                                                                                                                                                                                          <  1:684146/86‑1 (MQ=255)                                                                                                                                                                                                                                     tCGGCATGAGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGAGGGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCAGCCAGATa                                                                                                                                                                                                           >  1:77890/1‑116 (MQ=255)                                                                                                                                                                                                                                     tCGGCATGAGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGAGGGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCAGCCAGATAGTGGCCAGCGGTG‑GTAGCGTCAGGCTTAGTGAATGCTGACGACCGTGGCTGGCAATCTCATCGCTGTGTACCGTGCCGCCATTGCCTGCATTACTGCCGTGATAGTGCATGGAATCGGTATTGAGGATTTCACGCCATTTGCCCGGCTGGTTTATGCCg                                           >  1:174516/1‑275 (MQ=255)                                                                                                                                                                                                                                     tCGGCATGAGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGAGGGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCAGCCAGATAGTGGCCAGCGGTG‑GTAGCGTCAGGCTTAGTGAATGCTGACGACCGTGGCTGGCAAGCTCATCGCTGTGTAACGTGCCGCCATTGCCTGGAATACTGCCGTGATAGTGCATGGAATAGGTATGGAGGGATTGGNGCCCTTTTCCCGACTTGttttttccc                                           >  2:479398/1‑269 (MQ=255)                                                                                                                                                                                                                                         cATGGGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGAGGGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCAGCCAGATAGTgg                                                                                                                                                                                                       <  2:77889/116‑1 (MQ=255)                                                                                                                                                                                                                                              gCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGAGGGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCAGCCAGATAGTGGCCAGCGGTG‑GTAGCGTCAGGCTTAGTGAATGCTGACGACCGTGGCTGGCACTCTCATCGCTGTGTACCGTGCCGCCATTGCCTGCATTACTGCCGTGATAGTGCATGGAATCGGAAATGAGGATTTCACGCCATTTGCGCGGCTGGTGTGTGCCNCGGCGCTaa                                  >  2:277848/1‑275 (MQ=255)                                                                                                                                                                                                                                                         tgtgAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGAGGGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCAGCCAGATAGTGGCCAGCGGTG‑GTAGCGTc                                                                                                                                                                                     >  1:637472/1‑117 (MQ=255)                                                                                                                                                                                                                                                            gAAGTTGACGCCTTGACCGTCGTAATGCGCGCCGGTGGGAGCGGGTTTGCCAATGGCGAGTTGTGTCGTTCTGCCTCCCTAACCAGCCAGATAGTGGCCAGCGGTG‑GTAGCGTCAGGCTTAGTGAATGCTGACGACCGTGGCTGGCAATCTCATCGCTGTGTACCGTGCCGCCATTGCCTGCATTACTGCCGTGATAGTGCATGGAATCGGTATTGAGGATTTCACGCCATTTGCCCGGCTGGTTTATGCCGAAGCGATAATCATGACGCGGTa                     <  1:268639/274‑1 (MQ=255)                                                                                                                                                                                                                                                             aaGTTGACGCCCTGACCGTCGTAATGCGCGCCGAGGGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCAGCCAGATAGTGGCCAGCGGTG‑GTAGCGTCAGGc                                                                                                                                                                                 <  2:637463/117‑1 (MQ=255)                                                                                                                                                                                                                                                                              gtcgtAATGCGCGCCGAGGGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCAGCCAGATAGTGGCCAGCGGTG‑GTAGCGTCAGGCTTAGTGAATGCTGACGACCGTGGCTGGCAATCTCATCGCTGTGTACCGTGCCGCCATTGCCTGCATTACTGCCGTGATAGTGCATGGAATCGGTATTGAGGATTTCACGCCATTTGCCCGGCTGGTTTATGCCGAAGCGATAATCATGACGCGGTACCGGCGTAAAGTTACTGGc  <  1:277853/275‑1 (MQ=255)                                                                                                                                                                                                                                                                                cgtAATGCGCGCCGAGGGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCAGCCAGATAGTGGCCAGCGGTG‑GTAGCGTCAGACTTa                                                                                                                                                                              >  2:584753/1‑101 (MQ=255)                                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                                                 TATCTTTAAACTCCCCGTCAATTTGCCGCGCGCAAGGATCAATCAACAACTTCGCCGGGTTAAAGCGATGCCCCTCGGCGGGTTGCCAGGGGCCATGAACGCGATAACCATAACGCAAACCCGGGCGCGCATCCGGCAGATAACCGTGCCAAATGTCGCCACTGTGCCCTGGCAAGTCATAGCGATGTTCCTGGCCATTGGCGTCAAAGACACACAGTTCTA‑CCCGCTCGGCATGAGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGAGGGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCAGCCAGATAGTGGCCAGCGGTG‑GTAGCGTCAGGCTTAGTGAATGCTGACGACCGTGGCTGGCAATCTCATCGCTGTGTACCGTGCCGCCATTGCCTGCATTACTGCCGTGATAGTGCATGGAATCGGTATTGAGGATTTCACGCCATTTGCCCGGCTGGTTTATGCCGAAGCGATAATCATGACGCGGTACCGGCGTAAAGTTACTGGC  >  CP009273/3564361‑3564903

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.