New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3644618 =	14 (0.360)	7 (0.190)	6/300	NT	11.9%	intergenic (+596/‑33)	arsC/yhiS	arsenate reductase/pseudogene
	?	CP009273	3644734 =	90 (2.450)					pseudogene (84/741 nt)	yhiS	pseudogene

CATTTGTATATGTAGTGTTCGTGTGGCACGCATTAATTTGTTGAAGTTGGTGTTGCGCTAAATCATATTGATCAGAGATATATCCTTCTCCAGAGAATGTGGAATTAATGGGTTGTTGTTCTTCCCAATTATCGCAAGGCCACTTCGGTGTGTCTGGCGTTTTAGCATTATCGGTATTTGTTGTGCAGTTATAAATATCGCCGTGATATGTATTTATTATACCTGGGGTAAAGTCAATTGACATAAAATTCCTTATTCATCATTTGTTTTATGCTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/3644894‑3644618 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgctaaAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATATCTCTGATCAATATGATTTAGCGCAACACCAACTTCAACAAATTAATGCGTGCCACACGAACACTACATATACAAATGCAGACTACTCAAAAGTTGTGGCTCAACTTGTAAGTCTTATTACTAACATTGAAACGATAAGTTCGACACAACTTAC  >  CP009273/3644734‑3644970                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    tATTTGTATATGTAGTGTTCGTGTGGCACTCATTAATTTGTTGAAGTTGGTGTTGCGCTAAATCATATTGATCAGAGATATATCCTTCTCCAGAGAATGTGGAATTAATGGGTTGTTGTTCTTCCCAATTATCGCAAGGCCACTTCGGTGTGTCTGGCGTTTTAGCATTATCGGTATTTGTTGTGCAGTTATAAATATCGCCGTGATATGTATTTATTATACCTGGGGTAAAGTCAATTGACATAAAATTCCTTATTCATCATTTGTTTTATGCT                                                                                                                                                                                                                                                 <  1:341598/274‑1                  TTCGTGTGGCACGCATTAATTTGTTGAAGTTGGTGTTGCGCTAAATCATATTGATCAGAGATATATCCTTATCCAGAGAATGTGGAATTAATGGGTTGTTGTTCTTCCCAATTATAGCAAGGCCAGTTCGGTGTGTCTGGCGTTTTAGCGTTATAGGTATTTGTTGTGCAGTTATAAATATCGCCGTGATATGTATTTATTATAACTGGGGTAAAGTCAATTAAAATANAATACATTAATAATAATTGGGNTTATGATAAAggatttaa                                                                                                                                                                                                                                      >  2:459153/1‑261                                                                                                                                                                         acatGGTTTTTGTTGTGCAGTTATTAATATCGCCGTGATATGTATTTATTATACCTTGGGTAAAGTCAATTGACATAAAATTCCTTATTCATCATTTGTTTTATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATATCTCTGATCAATATGATTTAGCGCAACACCAACTTCAACAAATTAATGCGTGCCACACGAACACTACATATACAAATGCAGA                                                                          <  1:103906/270‑1                                                                                                                                                                                                       CGCCGTGATATGTATTTATTATACCTGGGGTAAAGTCAATTGACATAAAATTCCTTATTCATCATTTGTTTTATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATATCTCTGATAAATATGATTTAGAGCAACACCAACTTCAACAAATTAATGCGTGAAACACAAAAACAAAATAAACAAAAGCAGACAAANCAAAAG‑TGTTGNNCAACTTattacat                                          >  2:485157/1‑268                                                                                                                                                                                                                             ACCTGGGGTAAAGTCAATTGACATAAAATTCCTTATTCATCATTTGTTTTATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATATCTCTGATCAATATGATTTAGCGCAACACCAACTTCAACAAATTAATGC                                                                                                           >  2:347665/1‑189                                                                                                                                                                                                                               CTGGGGTAAAGTCAATTGACATAAAATTCCTTATTCATCATTTGTTTTATG                                                                                                                                                                                                                                                   >  2:594100/1‑51                                                                                                                                                                                                                                 GGGGTAAAGTCAATTGACATAAAATTCCTTATTCATCATTTGTTTTATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATATCTCTGATCAATATGATTTAGCGCAACACCAACTTCAACAAATTAATGCGTGC                                                                                                       <  1:347671/189‑1                                                                                                                                                                                                                                   GGTAAAGTCAATTGACATAAAATTCCTTATTCATCATTTGTTTTATGCTAA                                                                                                                                                                                                                                               <  1:594109/51‑1                                                                                                                                                                                                                                            AATTGACATAAAATTCCTTATTCATCATTTGTTTTATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATATCTCTGATCAATATGATTTAGCGCAACACCAACTTCAACAAATTAATGCGTGCCACACGAACACTACATATACAAATGCAGACTACTCAAAAGTTGTGGCTCAACTTGTAAGTCTTATTAATAACATTGAAACGAAAAGTTCAACACAA       >  1:184896/1‑274                                                                                                                                                                                                                                                 cccTAAAATTACTTATTCATCATTTGTTTTATGCTCAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATATCTCTGATCAATATGATTTAGCGCAACACCAACTTCAACAAAGTAAAGCGTGCCACACGAACACTACATATACAAATGCAGACTACTCAAAAGTTGTGGCTCAACTTGTAAGTCTTATTACTAACATTGAAACGATAAGTTCGACACAACTTAC  <  2:184893/271‑1                                                                                                                                                                                                                                                 ACATAAAATTCCTTATTCATCATTTGTTTTATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCANTAATTCCACATTCTCTGGAGAAGGATATATCTCTGATCAATATGATTTAGCGCAACACCAACTTCAACAAATTAATGCGTGCCACACGAACACTACATATACAAATGCAGACTACTCAAAAGTTGTGGCTCAACTTGTAAGTCTTATTACTAACATTGCCACGATAATTTCGACACAACTTAC  <  1:485164/274‑1                                                                                                                                                                                                                                                                               ATGCTATAACGCCAGACACACCGAAGTGGCCGTGCGATAATTGTGAAGAACAACAACCCATTAATTCCACATCCTCTGGAGAAGGATATATCTCTGATCAATATGATTTAGCGCAACACCAACTTCAACAAATTAATGCGTGCCACACGAACA                                                                                             <  1:669612/153‑1                                                                                                                                                                                                                                                                               ATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATATCTCTGATCAATATGATTTAGCGCAACACCAACTTCAACAAATTAATGCGTGCCACACGAACA                                                                                             <  1:123498/153‑1                                                                                                                                                                                                                                                                               ATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATATCTCTGATCAATATGATTTAGCGCAACACCAACTTCAACAAATTAATGCGTGCCACACGAA                                                                                               <  2:172763/151‑1                                                                                                                                                                                                                                                                               ATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAA                                                                                                                                                                                              <  2:517954/56‑1                                                                                                                                                                                                                                                                                 GCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATATCTCTGATCAATATGATTTAGCGCAACACCAACTTCAACAAATTAATGCGTGCCACACGAACACTACATATACAAATGCAGACTACTCAAAAGTTGTGGCTCAACTTGTAAGTC                                          <  2:295459/202‑1                                                                                                                                                                                                                                                                                 GCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATATCTCTGAT                                                                                                                                                    <  1:417464/96‑1                                                                                                                                                                                                                                                                                 GCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATA                                                                                                                                                              <  1:9104/86‑1                                                                                                                                                                                                                                                                                 GCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATA                                                                                                                                                              <  1:189862/86‑1                                                                                                                                                                                                                                                                                 GCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAG                                                                                                                                                                     <  2:448326/79‑1                                                                                                                                                                                                                                                                                  CTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATATCTCTGATCAATATGATTTAGCGCAACACCAACTTCAAC                                                                                                                     >  1:183240/1‑126                                                                                                                                                                                                                                                                                  CTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAG                                                                                                                                                                  >  2:195980/1‑81                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CATTTGTATATGTAGTGTTCGTGTGGCACGCATTAATTTGTTGAAGTTGGTGTTGCGCTAAATCATATTGATCAGAGATATATCCTTCTCCAGAGAATGTGGAATTAATGGGTTGTTGTTCTTCCCAATTATCGCAAGGCCACTTCGGTGTGTCTGGCGTTTTAGCATTATCGGTATTTGTTGTGCAGTTATAAATATCGCCGTGATATGTATTTATTATACCTGGGGTAAAGTCAATTGACATAAAATTCCTTATTCATCATTTGTTTTATGCTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/3644894‑3644618 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgctaaAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATATCTCTGATCAATATGATTTAGCGCAACACCAACTTCAACAAATTAATGCGTGCCACACGAACACTACATATACAAATGCAGACTACTCAAAAGTTGTGGCTCAACTTGTAAGTCTTATTACTAACATTGAAACGATAAGTTCGACACAACTTAC  >  CP009273/3644734‑3644970

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.