New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 3644618 =14 (0.360)7 (0.190) 6/300 NT 11.9% intergenic (+596/‑33) arsC/yhiS arsenate reductase/pseudogene
?CP009273 3644734 = 90 (2.450)pseudogene (84/741 nt) yhiS pseudogene

Only 100 of 125 total aligned reads displayed.

CACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGTATAATAAATACATATCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATATCTCTGATCAATATGATTTAGCGCAACACCAACTTCAACAAATTAATGCGTGCCACACGAACACTACATATACAAATGCAGACTACTCAAAAGTTGTGGCTCAACTTGTAAGTCTTATTACTAACATTGAAACGATAAGTTCGACACAACTTACGCAACAGACACAATC  >  CP009273/3644474‑3644985
                                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                           
ttcgtgtggcacgcattaatttgttgaagttggtgttgcgctaaatcatattgatcagagatatatccttatccagagaatgtggaattaatgggttgttgttcttcccaattatagcaaggccagttcggtgtgtctggcgttttagcgttataggtatttgttgtgcagttataaatatcgccgtgatatgtatttattataactggggtaaagtcaattaaaatanaatacattaataataattgggnttatgataaaggatttaa                                                                                                                                                                                                                                                     >  2:459153‑M2/261‑261 (MQ=255)
                                                                                            aTTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGAATTTACCCCAGGTATAATAAATACATATCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAAGGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAAAAACCAATTAATTCCACATTCTCTGAAGAAGTAAATATCACTGATCaaaaaaataaaaagc                                                                                                                                                   >  1:459160/1‑262 (MQ=255)
                                                                                                  tgtAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGTATAATAAATACATATCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATCATTGGGAAGAACAACAACCCATTAATTCCAAATTNTCTGGAGAAGGAAATATCTCGTATCActataaaagctttccc                                                                                                                                                 >  2:445732/1‑259 (MQ=255)
                                                                                                  tgtAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGTATAATAAATACATATCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGATAGACACACCGAAGTGGCCTTGCGATAATTGCGAAGAAAAAAAACCCATAAAATACACATTCCCAGGAGAAGGAAATATAACTNATAAATATAATAAATCACAacaca                                                                                                                                             >  2:432343/1‑274 (MQ=255)
                                                                                                      gaagaaAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGTATAATAAATACATATCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATATCTCTGAt                                                                                                                                                                   <  1:445739/249‑1 (MQ=255)
                                                                                                                                  ccAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGTATAATAAATACATATCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGaacaacaac                                                                                                                                                                                                            >  1:687931/1‑180 (MQ=255)
                                                                                                                                       ttaaatcctTTATCATAANCCCAATTATTATTAATGTATTNTATTTTAATTGACTTTACCCCAGTTATAATAAATACATATCACGGCGATATTTATAACTGCACAACAAATACCTATAACGCTAAAACGCCAGACACACCGAACTGGCCTTGCTATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGATAAGGATATATCTCTGATCAATATGATTTAGCGCAACACCAACTTCAACAAATTAATGCGTGCCACACGaa                                                                                                              >  2:459153‑M1/10‑269 (MQ=255)
                                                                                                                                           aCATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGTATAATAAATACATATCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCAGACAAACCGAAGTGGCCTTGCGATAATTGGGAAGaacaacaac                                                                                                                                                                                                            >  2:670961/1‑171 (MQ=255)
                                                                                                                                               cTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGTATAATAAATACATATCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCCGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCAt                                                                                                                                                                                                        <  1:670970/171‑1 (MQ=255)
                                                                                                                                                  AGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGTATAATAAATACATATCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATATCTCTGATCAATATGATTTAGCGCAACACCAACTTCAACAAATTAATGAGTGCCACACGAACACTACATATACAAata                                                                                             <  1:341598‑M1/275‑2 (MQ=255)
                                                                                                                                                       acatggtttttgttgtgcagttattaatatcgccgtgatatgtatttattataccttgggtaaagtcaattgacataaaattccttattcatcatttgttttatgctaaAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATATCTCTGATCAATATGATTTAGCGCAACACCAACTTCAACAAATTAATGCGTGCCACACGAACACTACATATACAAATGCAGa                                                                                         <  1:103906‑M2/165‑1 (MQ=255)
                                                                                                                                                             aaTGATGAATAAGGAATTTTATGTCAATTGAATTTACCCCAGGTATAATAAATACATATCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATATCTCTGATCAATATGATTTAGCGCAACACCAACTTCAACAAATTAATGCGt                                                                                                                        <  1:44386/237‑1 (MQ=255)
                                                                                                                                                              atgatgAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGTATAATAAATACATATCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGCAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATATCTCTGATCAATATGATTTAGCGCAACACCAACTTCAACAAATTAATGCGTGCCACACGAACACTACATACACACATCCAGactagcca                                                                                  >  2:129748/1‑270 (MQ=255)
                                                                                                                                                                  tgaATAAGGAATTTTATGTCAATTGACTTTACCCCAGGTATAATAAATACATATCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATATCTCTGATCAATATGATTTAGCGCAACACCAACTTCAACAAATTAATGCGTGCCACACGAac                                                                                                             <  2:709154/243‑1 (MQ=255)
                                                                                                                                                                    aaTAAGGAATTTTATGTCAATTGACTTTACCCCAGGTATAATAAATACATATCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGgaagaa                                                                                                                                                                                                                   >  2:342232/1‑139 (MQ=255)
                                                                                                                                                                        aGGAATTTTATGTCAATTGACTTTACCCCAGGTATAATAAATACATATCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGaacaac                                                                                                                                                                                                               <  1:342238/139‑1 (MQ=255)
                                                                                                                                                                        aGGAATTTTATGTCAATTGACTTTACCCCAGGTATAATAAATACATATCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGgag                                                                                                                                                                                    <  2:573383/166‑1 (MQ=255)
                                                                                                                                                                           aaTTTTATGTCAATTGACTTTACCCCAGGTATAATAAATACATATCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATATCTCTAATCAATATGATTTAGCGCAACACCAACTTCAACAAATTAATGCGTGCcaca                                                                                                                  >  1:371352/1‑229 (MQ=255)
                                                                                                                                                                                tATGTCAATTGACTTTACCCCAGGTATAATAAATACATATCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTctct                                                                                                                                                                                        >  2:605031/1‑154 (MQ=255)
                                                                                                                                                                                tATGTCAATTGACTTTACCCCAGGTATAATAAATACATATCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATATCTCTGATCAATATGATTTAGCGCAACACCAACTTCAACAAATTAATGCGTGCCACACGAACACTACa                                                                                                       >  1:113010/1‑235 (MQ=255)
                                                                                                                                                                                  tGTCAATTGACTTTACCCCAGGTATAATAAATACATATCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGaa                                                                                                                                                                                  <  2:639634/158‑1 (MQ=255)
                                                                                                                                                                                    tCAATTGACTTTACCCCAGGTATAATAAATACATATCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGgag                                                                                                                                                                                    <  1:605040/154‑1 (MQ=255)
                                                                                                                                                                                     cgccgtgatatgtatttattatacctggggtaaagtcaattgacataaaattccttattcatcatttgttttatgctaaAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATATCTCTGATAAATATGATTTAGAGCAACACCAACTTCAACAAATTAATGCGTGAAACACAAAAACAAAATAAACAAAAGCAGACAAANCAAAAG‑TGTTgnncaacttattacat                                                         >  2:485157‑M2/80‑268 (MQ=255)
                                                                                                                                                                                       aTTGACTTTACCCCAGGTATAATAAATACATATCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATtc                                                                                                                                                                                           >  1:317104/1‑144 (MQ=255)
                                                                                                                                                                                           aCTTTACCCCAGGTATAATAAATACATATCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTg                                                                                                                                                                                       <  2:317098/144‑1 (MQ=255)
                                                                                                                                                                                                      ggTATAATAAATACATATCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCAt                                                                                                                                                                                                        >  2:493494/1‑116 (MQ=255)
                                                                                                                                                                                                         ataataAATACATATCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATATCTCTGATCAATATGATTTAGCGCAACACCAACTTCAACAAATTAATGCGTGCCACACGAACACTACATATACAAATGCAGACTACTCAAAAGTTGTGGCTCAACTTGTAAGTCttat                                                     <  2:186263/260‑1 (MQ=255)
                                                                                                                                                                                                          taataaATACATATCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAgg                                                                                                                                                                                <  1:3270/136‑1 (MQ=255)
                                                                                                                                                                                                          taataaATACATATCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATAACTCTGATCAATATGATTTAGCGCAACACCAACTTCAACAAATTAATGCGTGCCACACGAACACTACATATACAAATGCAGACTACTCAAAAGTTGTGGCTCAACt                                                                 >  2:119255/1‑247 (MQ=255)
                                                                                                                                                                                                          taataaATACATATCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCCTTAACCGCGAAGATCAACAACCCATTAAt                                                                                                                                                                                                    <  1:493501/116‑1 (MQ=255)
                                                                                                                                                                                                           acctggggtaaagtcaattgacataaaattccttattcatcatttgttttatgctaaAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATATCTCTGATCAATATGATTTAGCGCAACACCAACTTCAACAAATTAATGc                                                                                                                          >  2:347665‑M2/58‑189 (MQ=255)
                                                                                                                                                                                                              aaataCATATCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATAACTCTGATCAATATGATTTAGCGCAACACCAACTTCAACAAATTAATGCGTGCCACACGAACACTACATATACAAATGCAGACTACTCAAAAGTTGTGGCTCAACTTGTa                                                             <  1:119256/247‑1 (MQ=255)
                                                                                                                                                                                                               ggggtaaagtcaattgacataaaattccttattcatcatttgttttatgctaaAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATATCTCTGATCAATATGATTTAGCGCAACACCAACTTCAACAAATTAATGCGTGc                                                                                                                      <  1:347671‑M2/136‑1 (MQ=255)
                                                                                                                                                                                                                ataCATATCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAAt                                                                                                                                                                                                                            >  1:266652/1‑86 (MQ=255)
                                                                                                                                                                                                                 taCATATCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACg                                                                                                                                                                                                                                                          >  1:279053/1‑55 (MQ=255)
                                                                                                                                                                                                                 taCATATCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGaaca                                                                                                                                                                                                                 >  2:119792/1‑96 (MQ=255)
                                                                                                                                                                                                                 taCATATCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATATCTCTGATCAATATGATTTAGCGCAACACCAACTTCAACAAATTAATGCGTGCCAAACGAAGACTACATATACAAATGCAAACTACTCAAAAGTTGTGGCTCACCTTGTAAGTCTTATTACTAACATTAAAACGATAAGt                               >  1:716953/1‑274 (MQ=255)
                                                                                                                                                                                                                  aCATATCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTg                                                                                                                                                                                       >  2:228784/1‑121 (MQ=255)
                                                                                                                                                                                                                    atatCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTggg                                                                                                                                                                                                                        <  2:266647/86‑1 (MQ=255)
                                                                                                                                                                                                                    atatCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAg                                                                                                                                                                                 >  1:187451/1‑125 (MQ=255)
                                                                                                                                                                                                                     tatCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCAg                                                                                                                                                                                                                                                      <  2:279048/55‑1 (MQ=255)
                                                                                                                                                                                                                     tatCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCAGa                                                                                                                                                                                                                                                     >  2:508493/1‑56 (MQ=255)
                                                                                                                                                                                                                     tatCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGaacaacaa                                                                                                                                                                                                             <  1:119793/96‑1 (MQ=255)
                                                                                                                                                                                                                     tatCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCGACATTCTCTGGAGAATGATATATCTCTTATCAATATGCTTTAgc                                                                                                                                                     <  1:530059/152‑1 (MQ=255)
                                                                                                                                                                                                                      atCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTgg                                                                                                                                                                                      >  2:373816/1‑118 (MQ=255)
                                                                                                                                                                                                                      atCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGgaga                                                                                                                                                                                   <  1:228789/121‑1 (MQ=255)
                                                                                                                                                                                                                      atCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATATCACTGATCAATATGATTTAGCGCAACACCAACTTCAACAAATTAATGCGTGCCACACGAACACTACATATACa                                                                                                 >  2:263190/1‑203 (MQ=255)
                                                                                                                                                                                                                        cACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGata                                                                                                                                                                             <  2:187448/125‑1 (MQ=255)
                                                                                                                                                                                                                         aCGGCGATATTTATAACTGCACAACATATACCGACAATGCGAAAACGCCAGacaca                                                                                                                                                                                                                                                 <  1:508500/56‑1 (MQ=255)
                                                                                                                                                                                                                          cGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGaa                                                                                                                                                                                  <  1:373822/118‑1 (MQ=255)
                                                                                                                                                                                                                          cGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATATCACTGATCAATATGATTTAGCGCAACACCAACTTCAACAAATTAATGCGTGCCACACGAACACTACATATACAAATg                                                                                             <  1:263195/203‑1 (MQ=255)
                                                                                                                                                                                                                          aattgacataaaattccttattcatcatttgttttatgctaaAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATATCTCTGATCAATATGATTTAGCGCAACACCAACTTCAACAAATTAATGCGTGCCACACGAACACTACATATACAAATGCAGACTACTCAAAAGTTGTGGCTCAACTTGTAAGTCTTATTAATAACATTGAAACGAAAAGTTCAACACaa                      >  1:184896‑M2/43‑274 (MQ=255)
                                                                                                                                                                                                                           ggCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATATCTCTGATCAATATGATTTAGCGCAACACCAACTTCAACAAATTAATGCGTGCCACACGAACACTACATATACAAATGc                                                                                            >  1:83507/1‑203 (MQ=255)
                                                                                                                                                                                                                               ccctaaaattacttattcatcatttgttttatgctcaAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATATCTCTGATCAATATGATTTAGCGCAACACCAACTTCAACAAAGTAAAGCGTGCCACACGAACACTACATATACAAATGCAGACTACTCAAAAGTTGTGGCTCAACTTGTAAGTCTTATTACTAACATTGAAACGATAAGTTCGACACAACTTAc                 <  2:184893‑M2/237‑1 (MQ=255)
                                                                                                                                                                                                                               atatTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATATCTCTGATCAATATGATTTAGCGCAACACCAACTTCAACAAATTAATGCGTGCCACACGAACACTACATATACAAATGCAGac                                                                                        <  2:83506/203‑1 (MQ=255)
                                                                                                                                                                                                                                       aaCTGCACAACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGTCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATATCTCTGATCAATATGATTTAGCGCAACACCAACTTCAACAAATTAATGCGTGCCACACGAACACTACATATACAAATGCAGACTACTCAAAAGTTGTGGCTCAACTTGTAAGTCTTATTACTAACATTGAAACGATAAGTTCGACACAACTTACGCAACAGac        <  1:129749/275‑1 (MQ=255)
                                                                                                                                                                                                                                       aaCTGCACAACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGgaa                                                                                                                                                                                                                      >  1:483021/1‑69 (MQ=255)
                                                                                                                                                                                                                                          tGCACAACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCANATTCTCTGGAGAAGGATATGTCTCTGATCAATATGATTTAGCGCAACACCAACTTCAACAAATTACTGCGTGCCACACGAACACTACATATACAAAGGCAGACTACTCAAAAGTTGTGGCTCAACTTGTAAGTCTTATTACTAACATTGAAACGATAAGTTCGACACAACTTACGCAACAGac        <  1:546718/272‑1 (MQ=255)
                                                                                                                                                                                                                                           gCACAACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAAt                                                                                                                                                                                                                            >  2:228169/1‑59 (MQ=255)
                                                                                                                                                                                                                                            cacaACAAATACCGATAGTGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATATCTCTGATCAATATGATTTAGCGCAACACCAACTTCAACAAATTAATGCGTGCCACACGAACACTACATATACAACTGCACACTACTCAAAAGTTGTGGCTCAACTTGTAAGTCTTATTACTAACATTTAAACGATAAGTTCAACACAACTTACTCAACACAAAcaat   >  1:371922/1‑275 (MQ=255)
                                                                                                                                                                                                                                            cacaACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGaacaacaac                                                                                                                                                                                                            >  1:459199/1‑74 (MQ=255)
                                                                                                                                                                                                                                            cacaACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTctct                                                                                                                                                                                        >  2:325525/1‑94 (MQ=255)
                                                                                                                                                                                                                                            cacaACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTgg                                                                                                                                                                                      >  1:295895/1‑96 (MQ=255)
                                                                                                                                                                                                                                            cacaACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTg                                                                                                                                                                                       >  1:304170/1‑95 (MQ=255)
                                                                                                                                                                                                                                            cacaACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAg                                                                                                                                                                                 >  2:195867/1‑101 (MQ=255)
                                                                                                                                                                                                                                            cacaACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATATCTCTGATc                                                                                                                                                                  >  2:294852/1‑116 (MQ=255)
                                                                                                                                                                                                                                            cacaACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATATCTCTGATCAatat                                                                                                                                                             >  1:73198/1‑121 (MQ=255)
                                                                                                                                                                                                                                            cacaACAAATACCGATAATGCTAAAACGCCAGACACAACGAAGTGGCCTTGCGATAATTGGGAAGAACAACAATCCATTAATTTCACATTCTCTgg                                                                                                                                                                                      >  2:583670/1‑96 (MQ=255)
                                                                                                                                                                                                                                            cacaACAAATACCGATAATACTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATATCTCTGATCAATATGATTTAGCGCAACACCAACTTCAACAAATTAATGCGTGCcaca                                                                                                                  >  1:583506/1‑164 (MQ=255)
                                                                                                                                                                                                                                             aaaacaaATACCGATAATGCGAAAACGCCAGACACACCGAAATGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCGGGAGAAGGATATATCTCTGATCAATATGATTTAGCGCAACACCAACTTCAACAAATTAATGCGTGCCACACGAACACTACATATACAAATGCAGACTACTCAAAAGTTGTGGCTCAACTTGTAAGTCTTATTACTAACATTGAAACGATAAGTTCGACACAACTTACGCAACAGACAcaatc  <  2:716943/273‑1 (MQ=255)
                                                                                                                                                                                                                                                acaaATACCGATAATGCTAAAACGCCAGACACACCGAAGTTGCCTTGCGATAATTGGGAAGAACAACAACCCAt                                                                                                                                                                                                        <  2:459192/74‑1 (MQ=255)
                                                                                                                                                                                                                                                acaaATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTACTTCCTCATTCTCTGGAGaa                                                                                                                                                                                  <  1:583679/96‑1 (MQ=255)
                                                                                                                                                                                                                                                acaaATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCcaca                                                                                                                                                                                              <  1:612594/84‑1 (MQ=255)
                                                                                                                                                                                                                                                acaaATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGgaga                                                                                                                                                                                   <  2:304164/95‑1 (MQ=255)
                                                                                                                                                                                                                                                acaaATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGaa                                                                                                                                                                                  <  2:295889/96‑1 (MQ=255)
                                                                                                                                                                                                                                                acaaATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGata                                                                                                                                                                             <  1:195870/101‑1 (MQ=255)
                                                                                                                                                                                                                                                acaaATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATATCTCTGATCAATATGAtt                                                                                                                                                         <  2:73197/121‑1 (MQ=255)
                                                                                                                                                                                                                                                acaaATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATATCTCTGATCAATATGATTTAGCGCAACACCAACTTCAACAAATTAATGCGTGCCACACGaa                                                                                                              <  2:583497/164‑1 (MQ=255)
                                                                                                                                                                                                                                                    aTACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATtc                                                                                                                                                                                           >  2:468646/1‑83 (MQ=255)
                                                                                                                                                                                                                                                    aTACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATATCTCTGATCAATATGATTTAGCGCAACACCAACTTCAACAAATTAATGCGTGCCACACGAACACTACATATACAAATGCAGACTACTCAAAAGTTGTgg                                                                        >  2:364972/1‑198 (MQ=255)
                                                                                                                                                                                                                                                      aCCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTaa                                                                                                                                                                                                     >  1:640300/1‑71 (MQ=255)
                                                                                                                                                                                                                                                        cGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTg                                                                                                                                                                                       <  1:468653/83‑1 (MQ=255)
                                                                                                                                                                                                                                                        cGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATATCTCTGATCAATATGATTTAGCGCAACACCAACTTCAACAAATTAATGCGTGCCACACGAACACTACATATACAAATGCAGACTACTCAAAAGTTGTGGCTCa                                                                    <  1:364978/198‑1 (MQ=255)
                                                                                                                                                                                                                                                         gATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATATCTCTGATCAATATGATTTAGCGCAACACCAACTTCAACAAATTAATGCGTGCcaca                                                                                                                  >  1:172766/1‑151 (MQ=255)
                                                                                                                                                                                                                                                         gATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATATCTCTGATCAATATGATTTAGCGCAACACCAACTTCAACAAATTAATGCGTGCCACACg                                                                                                                >  2:123497/1‑153 (MQ=255)
                                                                                                                                                                                                                                                         gATAATGCTAAAACGCCAGACACACCGAAGTGACCTTGCGATAAGTGGGAAGAACAACAACCCAGTAATTCAACATTCTCTGGAGAAGGATATAGCTCTGATCAATATGATTTAGCGCAACACCAACTTCAACAAATTAATGAGGGCCacaca                                                                                                                >  2:669603/1‑152 (MQ=255)
                                                                                                                                                                                                                                                          aTAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTcc                                                                                                                                                                                                 <  2:640291/71‑1 (MQ=255)
                                                                                                                                                                                                                                                           tAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTctct                                                                                                                                                                                        >  1:448333/1‑79 (MQ=255)
                                                                                                                                                                                                                                                           tAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATAtctc                                                                                                                                                                       >  2:417457/1‑96 (MQ=255)
                                                                                                                                                                                                                                                           tAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATATCTCTGATCAATATGATTTAGCGCAACACCAACTTCAACAAATTAATGCGTGCCACACGAACACTACATATACAAATGCAGACTACTCAAAAGTTGTGGCTCAACTTGTa                                                             >  1:295465/1‑202 (MQ=255)
                                                                                                                                                                                                                                                             atgctatAACGCCAGACACACCGAAGTGGCCGTGCGATAATTGTGAAGAACAACAACCCATTAATTCCACATCCTCTGGAGAAGGATATATCTCTGATCAATATGATTTAGCGCAACACCAACTTCAACAAATTAATGCGTGCCACACGAaca                                                                                                            <  1:669612‑M2/146‑1 (MQ=255)
                                                                                                                                                                                                                                                             atgctaaAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGaacaacaa                                                                                                                                                                                                             <  2:517954‑M2/49‑1 (MQ=255)
                                                                                                                                                                                                                                                               gctaaAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGgag                                                                                                                                                                                    <  2:448326‑M2/74‑1 (MQ=255)
                                                                                                                                                                                                                                                               gctaaAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGata                                                                                                                                                                             <  1:189862‑M2/81‑1 (MQ=255)
                                                                                                                                                                                                                                                               gctaaAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGata                                                                                                                                                                             <  1:9104‑M2/81‑1 (MQ=255)
                                                                                                                                                                                                                                                               gctaaAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATATCTCTGAt                                                                                                                                                                   <  1:417464‑M2/91‑1 (MQ=255)
                                                                                                                                                                                                                                                                ctaaAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAg                                                                                                                                                                                 >  2:195980‑M2/5‑81 (MQ=255)
                                                                                                                                                                                                                                                                ctaaAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATATCTCTGATCAATATGATTTAGCGCAACACCAACTTcaac                                                                                                                                    >  1:183240‑M2/5‑126 (MQ=255)
                                                                                                                                                                                                                                                                    aaCGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGata                                                                                                                                                                             <  1:195983/81‑1 (MQ=255)
                                                                                                                                                                                                                                                                    aaCGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATATCTCTGATCAATATGATTTAGCGCAACACCAACTTCAACAAAt                                                                                                                                <  2:183237/126‑1 (MQ=255)
                                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                           
CACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGTATAATAAATACATATCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATATCTCTGATCAATATGATTTAGCGCAACACCAACTTCAACAAATTAATGCGTGCCACACGAACACTACATATACAAATGCAGACTACTCAAAAGTTGTGGCTCAACTTGTAAGTCTTATTACTAACATTGAAACGATAAGTTCGACACAACTTACGCAACAGACACAATC  >  CP009273/3644474‑3644985

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.