New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3644618 =	14 (0.360)	7 (0.190)	6/300	NT	11.9%	intergenic (+596/‑33)	arsC/yhiS	arsenate reductase/pseudogene
	?	CP009273	3644734 =	90 (2.450)					pseudogene (84/741 nt)	yhiS	pseudogene

AAAAAAAATCACTTCACACACTATCAGAGAACATAATAACTTTTTAAAATGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGTATAATAAATACATATCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATATCTCTGATCAATATGATTTAGCGCAACACCAACTTCAACAAATTAATGCGTGCCACACGAA  >  CP009273/3644380‑3644877                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                                    aaaaaaaaTCACTTCACACACTATCAGAGAACATAATAACTTTTTAAAATGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCt                                                                                                                                                                                                                                                                     <  1:183040/239‑1 (MQ=255)  gtaagttgtgtcgaacttatcgtttcaatgttagtaataagacttacaagttgagccacaacttttgagtagtctgcatttgtatatgtagtgttcgtgtggcacgctttactttgttgaagttggtgttgcgctaaatcatattgatcagagatatatccttctccagagaatgtggaattaatgggttgttgttcttcccaattatcgcaaggccacttcggtgtgtctggcgttTGAGCATAAAACAAATGATGAATAAGTAATtttaggg                                                                                                                                                                                                                                 <  2:184893‑M1/37‑4 (MQ=255)  gtaagttgtgtcgaaattatcgtggcaatgttagtaataagacttacaagttgagccacaacttttgagtagtctgcatttgtatatgtagtgttcgtgtggcacgcattaatttgttgaagttggtgttgcgctaaatcatattgatcagagatatatccttctccagagaatgtggaattantgggttgttgttcttcccaattatcgcaaggccacttcggtgtgtctggcgttTTAGCATAAAACAAATGATGAATAAGGAATTTTATGt                                                                                                                                                                                                                                 <  1:485164‑M1/37‑1 (MQ=255)       ttgtgttgaacttttcgtttcaatgttattaataagacttacaagttgagccacaacttttgagtagtctgcatttgtatatgtagtgttcgtgtggcacgcattaatttgttgaagttggtgttgcgctaaatcatattgatcagagatatatccttctccagagaatgtggaattaatgggttgttgttcttcccaattatcgcaaggccacttcggtgtgtctggcgttTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAAtt                                                                                                                                                                                                                            >  1:184896‑M1/233‑274 (MQ=255)                                          gacttacaagttgagccacaacttttgagtagtctgcatttgtatatgtagtgttcgtgtggcacgcattaatttgttgaagttggtgttgcgctaaatcatattgatcagagatatatccttctccagagaatgtggaattaatgggttgttgttcttcccaattatcgcaaggccacttcggtgtgtctggcgttTTAGc                                                                                                                                                                                                                                                                 <  2:295459‑M1/5‑1 (MQ=255)                                           atgtaataagttgnncaacacttttgntttgtctgcttttgtttattttgtttttgtgtttcacgcattaatttgttgaagttggtgttgctctaaatcatatttatcagagatatatccttctccagagaatgtggaattaatgggttgttgttcttcccaattatcgcaaggccacttcggtgtgtctggcgttTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGTATAATAAATACATATCACGGCg                                                                                                                                                                                       >  2:485157‑M1/197‑275 (MQ=255)                                                                     gttAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACttt                                                                                                                                                                                                                      >  1:255023/1‑218 (MQ=255)                                                                         aCGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTAccc                                                                                                                                                                                                                  <  2:255018/218‑1 (MQ=255)                                                                          tctgcatttgtatatgtagtgttcgtgtggcacgcattaatttgttgaagttggtgttgcgctaaatcatattgatcagagatatatccttctccagagaatgtggaattaatgggttgttgttcttcccaattatcgcaaggccacttcggtgtgtctggcgttTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCAAGGTATAATAAATACATATCACGGCGATATTAATAACTGCACAACAaaaaccatgt                                                                                                                                                         <  1:103906‑M1/109‑5 (MQ=255)                                                                                             tgttcgtgtggcacgcattaatttgttgaagttggtgttgcgctaaatcatattgatcagagatatatccttctccagaggatgtggaattaatgggttgttgttcttcacaattatcgcacggccacttcggtgtgtctggcgttATAGCAt                                                                                                                                                                                                                                                               <  1:669612‑M1/7‑1 (MQ=255)                                                                                             tgttcgtgtggcacgcattaatttgttgaagttggtgttgcgctaaatcatattgatcagagatatatccttctccagagaatgtggaattaatgggttgttgttcttcccaattatcgcaaggccacttcggtgtgtctggcgttTTAGCAt                                                                                                                                                                                                                                                               <  1:123498‑M1/7‑1 (MQ=255)                                                                                               ttcgtgtggcacgcattaatttgttgaagttggtgttgcgctaaatcatattgatcagagatatatccttctccagagaatgtggaattaatgggttgttgttcttcccaattatcgcaaggccacttcggtgtgtctggcgttTTAGCAt                                                                                                                                                                                                                                                               <  2:172763‑M1/7‑1 (MQ=255)                                                                                                       gcacgcattaatttgttgaagttggtgttgcgctaaatcatattgatcagagatatatccttctccagagaatgtggaattaatgggttgttgttcttcccaattatcgcaaggccacttcggtgtgtctggcgttTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTAcccc                                                                                                                                                                                                                 <  1:347671‑M1/53‑1 (MQ=255)                                                                                                           gcattaatttgttgaagttggtgttgcgctaaatcatattgatcagagatatatccttctccagagaatgtggaattaatgggttgttgttcttcccaattatcgcaaggccacttcggtgtgtctggcgttTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGt                                                                                                                                                                                                             >  2:347665‑M1/133‑189 (MQ=255)                                                                                                                     gttgaagttggtgttgcgctaaatcatattgatcagagatatatccttctccagagaatgtggaattaatgggttgttgttcttcccaattatcgcaaggccacttcggtgtgtctggcgttTTAg                                                                                                                                                                                                                                                                  >  1:183240‑M1/123‑126 (MQ=255)                                                                                                                              gggTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGTATAATAAATACATATCAc                                                                                                                                                                                           >  1:140776/1‑188 (MQ=255)                                                                                                                                  ggAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGTATAATAAATACATATCACGGCg                                                                                                                                                                                       <  2:140775/188‑1 (MQ=255)                                                                                                                                     gaTAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCt                                                                                                                                                                                                                                                                     <  2:344786/107‑1 (MQ=255)                                                                                                                                                    atcagagatatatccttctccagagaatgtggaattaatgggttgttgttcttcccaattatcgcaaggccacttcggtgtgtctggcgttTTAGc                                                                                                                                                                                                                                                                 <  1:417464‑M1/5‑1 (MQ=255)                                                                                                                                                              tatccttctccagagaatgtggaattaatgggttgttgttcttcccaattatcgcaaggccacttcggtgtgtctggcgttTTAGc                                                                                                                                                                                                                                                                 <  1:9104‑M1/5‑1 (MQ=255)                                                                                                                                                              tatccttctccagagaatgtggaattaatgggttgttgttcttcccaattatcgcaaggccacttcggtgtgtctggcgttTTAGc                                                                                                                                                                                                                                                                 <  1:189862‑M1/5‑1 (MQ=255)                                                                                                                                                                  cttctccagagaatgtggaattaatgggttgttgttcttcccaattatcgcaaggccacttcggtgtgtctggcgttTTAg                                                                                                                                                                                                                                                                  >  2:195980‑M1/78‑81 (MQ=255)                                                                                                                                                                     ctccagagaatgtggaattaatgggttgttgttcttcccaattatcgcaaggccacttcggtgtgtctggcgttTTAGc                                                                                                                                                                                                                                                                 <  2:448326‑M1/5‑1 (MQ=255)                                                                                                                                                                                   ttACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAatgat                                                                                                                                                                                                                                                   >  1:548208/1‑79 (MQ=255)                                                                                                                                                                                       aTTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAAt                                                                                                                                                                                                                                               <  2:548199/79‑1 (MQ=255)                                                                                                                                                                                        tttATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCt                                                                                                                                                                                                                                                                     <  2:703781/56‑1 (MQ=255)                                                                                                                                                                                        tttATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCt                                                                                                                                                                                                                                                                     <  2:307361/56‑1 (MQ=255)                                                                                                                                                                                           aTTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGAATTTACCCCAGGTATAATAAATACATATCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAAGGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAAAAACCAATTAATTCCACATTCTCTGAAGAAGTAAATATCACTGATCaaaaaaataaaaagc                                       >  1:459160/1‑262 (MQ=255)                                                                                                                                                                                              ttgttgttcttcccaattatcgcaaggccacttcggtgtgtctggcgttTTAGCAt                                                                                                                                                                                                                                                               <  2:517954‑M1/7‑1 (MQ=255)                                                                                                                                                                                               tgtgtAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCt                                                                                                                                                                                                                                                                     <  1:313658/49‑1 (MQ=255)                                                                                                                                                                                                 tgtAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTa                                                                                                                                                                                                                                                                   >  1:84694/1‑49 (MQ=255)                                                                                                                                                                                                 tgtAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGTATAATAAATACATATCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATCATTGGGAAGAACAACAACCCATTAATTCCAAATTNTCTGGAGAAGGAAATATCTCGTATCActataaaagctttccc                                     >  2:445732/1‑259 (MQ=255)                                                                                                                                                                                                 tgtAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGTATAATAAATACATATCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATATCTCTGATAAATATGATTTAGCGAAaaaca                                 >  1:354962/1‑274 (MQ=255)                                                                                                                                                                                                 tgtAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGTATAATAAATACATATCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGATAGACACACCGAAGTGGCCTTGCGATAATTGCGAAGAAAAAAAACCCATAAAATACACATTCCCAGGAGAAGGAAATATAACTNATAAATATAATAAATCACAacaca                                 >  2:432343/1‑274 (MQ=255)                                                                                                                                                                                                     gaagaaAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCAt                                                                                                                                                                                                                                                               <  2:84693/49‑1 (MQ=255)                                                                                                                                                                                                     gaagaaAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGTATAATAAATACATATCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATATCTCTGAt                                                       <  1:445739/249‑1 (MQ=255)                                                                                                                                                                                                                                 ccAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGTATAATAAATACATATCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGaacaacaac                                                                                                >  1:687931/1‑180 (MQ=255)                                                                                                                                                                                                                                     tttAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGTATAATAAATACATATCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCAt                                                                                            <  2:687922/180‑1 (MQ=255)                                                                                                                                                                                                                                      ttaaatcctTTATCATAANCCCAATTATTATTAATGTATTNTATTTTAATTGACTTTACCCCAGTTATAATAAATACATATCACGGCGATATTTATAACTGCACAACAAATACCTATAACGCTAAAACGCCAGACACACCGAACTGGCCTTGCTATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGATAAGGATATATCTCTGATCAATATGATTTAGCGCAACACCAACTTCAACAAATTAATGCGTGCCACACGaa  >  2:459153‑M1/10‑269 (MQ=255)                                                                                                                                                                                                                                          aCATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGTATAATAAATACATATCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCAGACAAACCGAAGTGGCCTTGCGATAATTGGGAAGaacaacaac                                                                                                >  2:670961/1‑171 (MQ=255)                                                                                                                                                                                                                                              cTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGTATAATAAATACATATCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCCGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCAt                                                                                            <  1:670970/171‑1 (MQ=255)                                                                                                                                                                                                                                               TTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTAcc                                                                                                                                                                                                                   <  1:594109‑M1/51‑1 (MQ=255)                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                                    AAAAAAAATCACTTCACACACTATCAGAGAACATAATAACTTTTTAAAATGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGTATAATAAATACATATCACGGCGATATTTATAACTGCACAACAAATACCGATAATGCTAAAACGCCAGACACACCGAAGTGGCCTTGCGATAATTGGGAAGAACAACAACCCATTAATTCCACATTCTCTGGAGAAGGATATATCTCTGATCAATATGATTTAGCGCAACACCAACTTCAACAAATTAATGCGTGCCACACGAA  >  CP009273/3644380‑3644877

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.