New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3724381	103 (2.680)	4 (0.110)	4/296	NT	5.5%	intergenic (‑256/‑110)	xylA/xylF	D‑xylose isomerase/D‑xylose transporter subunit
	?	CP009273	= 3724865	40 (1.100)					coding (375/993 nt)	xylF	D‑xylose transporter subunit

GCTGGTCAAAATAGGCTTGCATATTGAACTCCATAATCAGGTAATGCCGCGGGTGATGGATGATGTCGTAATATTGGGCACTCCCTTTCAGTTGCTCAATTATGTTATTTCACACTGCTATTGAGATAATTCACAAGTGTGCGCTCGCTCGCAAAATAAAATGGAATGATGAAACTGGGTAATTCCTCGAAGAGAAAAATGCAATAAGTACAATTGCGCAACAAAAGTAAGATCTCGGTCATAAATCAAGAAATAAACCAAAAATCGTAATCGAAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3724104‑3724381 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcgaaagaAATATAAAAATCGATATCCGCATCGTTAATCATACGGTCGTAAGCTAATACTTTAATGCCTTCTTGTTTGGCTTCTTTTACAACGT  <  CP009273/3724865‑3724780                                                                                                                                                                                                                                                                                                                                                                              ttgGGTAAAAATAGGCTTGCATATTACACTACATAATCAGGTTATTGCGAGGGTGATGGATGATTTCGTAATATTGGGCACTCCCTTTCAGTTGCTCAATTATGTTATTTCACACTGCTATTGAGATAATTCACAAGTGTGCGCTCGCTCGCAAAATAAAATGGAATGATGAAACTGGGTAATTCCTCGAAGAGAAAAATGCAATAAGTACAATTGCGCAACAAAAGTAAGATCTCGGTCATAAATCAAGAAATAAACCAAAAATCGTAATCGAA                                                                                           <  2:497323/272‑1     GTCAAAATAGGCTTGCATATTGAACTCCATAATCAGGTAATGCCGCGGGTGATGGATGATGTCGTAATATTGGGCACTCCCTTTCAGTTGCTCAATTATGTTATTTCACACTGCTATTGAGATAATTCACAAGTGTGCGCTCGCTCGCAAAATAAAATGGAATGATGAAACTGGGTAATTCCTCGAAGAGAAAAATGCAATAAGTACAATTACGCAACAAAAGAAAGATATCGGTAACAAATCAAGAAATAAAACAAAAAACCTAAaagacagat                                                                                       >  2:112042/1‑266                                                                            GGGCACTCCCTTTCAGTTGCTCAATTATGTTATTTCACACTGCTATTGAGATAATTCACAAGTGTGCGCTCGCTCGCAAAATAAAATGGAATGATGAAACTGGGTAATTCCTCGAAGAGAAAAATGCAATAAGTACAATTGCGCAACAAAAGTAAGATCTCGGTCATAAATCAAGAAATAAACCAAAAATCGTAAT                                                                                               >  1:142210/1‑196                                                                                ACTCCCTTTCAGTTGCTCAATTATGTTATTTCACACTGCTATTGAGATAATTCACAAGTGTGCGCTCGCTCGCAAAATAAAATGGAATGATGAAACTGGGTAATTCCTCGAAGAGAAAAATGCAATAAGTACAATTGCGCAACAAAAGTAAGATCTCGGTCATAAATCAAGAAATAAACCAAAAATCGTAATCGAA                                                                                           <  2:142209/196‑1                                                                                                                                  TTCACAAGTGTGCGCTCGCTCGCAAAATAAAATGGAATGATGAAACTGGGTAATTCCTCGAAGAGAAAAATGCAATAAGTACAATTGCGCAACAAAAGTAAGATCTCGGTCATAAATCAAGAAATAAACCAAAAATCGTAATCG                                                                                             <  1:601599/144‑1                                                                                                                                                                                   GTAATTCCTCGAAGAGAAAAATGCAATAAGTACAATTGCGCAACAAAAGTAAGATCTCGGTCATAAATCAAGAAATAAACCAAAAATCGTAA                                                                                                >  2:564027/1‑92                                                                                                                                                                                       TTCCTCGAAGAGAAAAATGCAATAAGTACAATTGCGCAACAAAAGTAAGATCTCGGTCATAAATCAAGAAATAAACCAAAAATCGTAATAGA                                                                                            <  1:564036/92‑1                                                                                                                                                                                                                 TACAATTGCGCAACAAAAGTAAGATCTCGGTCATAAATCAAGAAATAAACCAAAAATCGTAATCG                                                                                             <  1:463284/65‑1                                                                                                                                                                                                                        GCGCAACAAAAGTAAGATCTCGGTCATAAATCAAGAAATAAACCAAAAATCGTAATCGAAAGAAATATAAAAATCGATATCCGCATCGTTAATCATACGGTCGTAAGCTAATACTTTAATGCCTTCTTGTTTG                  >  2:605588/1‑133                                                                                                                                                                                                                         CGCAACAAAAGTAAGATCTCGGTCATAAATCAAGAAATAAACCAAAAATCGTAATCGAAAG                                                                                         >  1:221120/1‑61                                                                                                                                                                                                                            AACAAAAGTAAGATCTCGGTCATAAATCAAGAAATAAACCAAAAATCGTAATCGAAAGAAATATAAAAATCGATATCCGCATCGTTAATCATACGGTCGTAAGCTAATACTTTAATGCCTTCTTGTTTGGCTT              <  1:605597/133‑1                                                                                                                                                                                                                                   GTAAGATCTCGGTCATAAATCAAGAAATAAACCAAAAATCGTAAT                                                                                               >  2:14692/1‑45                                                                                                                                                                                                                                       GATCTCGGTCATAAATCAAGAAATAAACCAAAAATCGTAATCGAA                                                                                           <  1:14692/45‑1                                                                                                                                                                                                                                        ATCTCGGTCATAAATCAAGAAATAAACCAAAAATCGTAATCGAAAGAAATATAAAAATCGATATCCGCATCGTTAATCATACGGTCGTAAGCTAATACTTTAATGCCTTCTTGTTTGGCTTCTTTTACA      >  2:47403/1‑129                                                                                                                                                                                                                                            CGGTCATAAATCAAGAAATAAACCAAAAATCGTAATCGAAAGAAATATAAAAATCGATATCCGCATCGTTAATCATACGGTCGTAAGCTAATACTTTAATGCCTTCTTGTTTGGCTTCTTTTACAACGT  <  1:47403/129‑1                                                                                                                                                                                                                                                                                                                                                                              GCTGGTCAAAATAGGCTTGCATATTGAACTCCATAATCAGGTAATGCCGCGGGTGATGGATGATGTCGTAATATTGGGCACTCCCTTTCAGTTGCTCAATTATGTTATTTCACACTGCTATTGAGATAATTCACAAGTGTGCGCTCGCTCGCAAAATAAAATGGAATGATGAAACTGGGTAATTCCTCGAAGAGAAAAATGCAATAAGTACAATTGCGCAACAAAAGTAAGATCTCGGTCATAAATCAAGAAATAAACCAAAAATCGTAATCGAAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3724104‑3724381 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcgaaagaAATATAAAAATCGATATCCGCATCGTTAATCATACGGTCGTAAGCTAATACTTTAATGCCTTCTTGTTTGGCTTCTTTTACAACGT  <  CP009273/3724865‑3724780

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.