New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3724381	103 (2.680)	4 (0.110)	4/296	NT	5.5%	intergenic (‑256/‑110)	xylA/xylF	D‑xylose isomerase/D‑xylose transporter subunit
	?	CP009273	= 3724865	40 (1.100)					coding (375/993 nt)	xylF	D‑xylose transporter subunit

ATATCTTTGTGAAAAAGGCAGAATCTCTCGGCGCGAAAGTATTTGTACAGTCTGCAAATGGCAATGAAGAAACACAAATGTCGCAGATTGAAAACATGATAAACCGGGGTGTCGATGTTCTTGTCATTATTCCGTATAACGGTCAGGTATTAAGTAACGTTGTAAAAGAAGCCAAACAAGAAGGCATTAAAGTATTAGCTTACGACCGTATGATTAACGATGCGGATATCGATTTTTATATTTCTTTCGATAACGAAAAAGTCGGTGAACTGCAGGCAAAAGCCCTGGTCGATATTGTTCCGCAAGGTAATTACTTCCTGATGGGCGGCTCGCCGGTAGATAACAACGCCAAGCTGTTCCGCGCCGGACAAATGAAAGTGTTAAAACCTTACGTTGATTCCGGAAAAATTAAAGTCGTTGGTGACCAATGGGTTGATGGCTGGTTACCGGAAAACGCATTGAAAATTATGGAAAACGCGCTAA  >  CP009273/3724624‑3725106                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                  atatCTTTGTGAAAAAGGCAGAATCTCTCGGCGCGAAAGTATTTGTACAGTCTGCAAATGGCAATGAAGAAACACAAATGTCGCAGATTGAAAACATGATAAACCGGGGTGTCGATGTTCTTGTCATTATTCCGTATAACGGTCAGGTATTAAGTAACNTTGTAAAAGAAGCCAAACAAGAAGGCATTAAAGTATTAGCTTACGACCGTATGATTAACGATGCGGATATCGATTTTTATATTTCTTTCGATAACGAAAAAGTCGGTGAACTGCa                                                                                                                                                                                                                   >  1:665205/1‑274 (MQ=255)                                                                                                                                       tataACGGTCAGGTATTAAGTAACGTTGTAAAAGAAGCCAAACAAGAAGGCATTAAAGTATTAGCTTACGACCGTATGATTAACGATGCGGATATCGATTTTTATATTTCTTTCGATAACGAAAAAGTCGGTGAACTGCAGGCAAAAGCCCTGGTCGATATTGtt                                                                                                                                                                                          >  1:714422/1‑165 (MQ=255)                                                                                                                                           atgggcAGGTATTAAGTAACGTTGTAAAATAAGCCAAACAAGAAGGCATTAAAGTAGTAGCTTACGACCGTATTATTAACGATGCGGATTTCGATTTTTATATTTCTTTCGATAACGAAAAAGTCGGTGAACTGCAGGCAAAAGCCCTGGTCGATATTGTTCCGCAAGGTAATTACTTCCTGATGGGCGGCTCGCCGGTAGATAACAACGCCAAGCTGTTCCGCGCCGGACAAATGAAAGTGtt                                                                                                       <  1:149787/239‑1 (MQ=255)                                                                                                                                           aCGGTCAGGTATTAAGTAACGTTGTAAAAGAAGCCAAACAAGAAGGCATTAAAGTATTAGCTTACGACCGTATGATTAACGATGCGGATATCGATTTTTATATTTCTTTCGATAACGAAAAAGTCGGTGAACTGCAGGCAAAAGCCCTGGTCGATATTGTTCCGc                                                                                                                                                                                      <  2:714412/165‑1 (MQ=255)                                                                                                                                              gTCAGGTATTAAGTAACGTTGTAAAAGAAGCCAAACAAGAAGGCATTAAAGTATTAGCTTACGACCGTATGATTAACGATGCGGATATCGATTTTTATATTTCTTTCGATAACg                                                                                                                                                                                                                                      >  1:632684/1‑114 (MQ=255)                                                                                                                                               taaGGTATTAAGTAACCGTGTAAAAGACGCCAAACAAGAAGGCATTAAAGTATTAGCTTACGACAGTATGATTAACGATGCGGAAATCGATTTTTATATTTCTTTCGATAACGAAAAAGTCGGTGAACTGCAGGCAAAAGCCCTGGTCGATATTGTTCCGCAAGGTAATTACTTCCTGATGGGCGGCTCGCCGGTAGATAACAACGCCAAGCTGTTCCGCGCCGGACAAATGAAAGTGTTAAAACCTTACGTTGATTCCGGAAAAATTAAAGTCg                                                                    <  2:594832/273‑1 (MQ=255)                                                                                                                                                 aGGTATTAAGTAACGTTGTAAAAGAAGCCAAACAAGAAGGCATTAAAGTATTAGCTTACGACCGTATGATTAACGATGCGGATATCGATTTTTATATTTCTTTCGATAACGAAAAAGTCGGTGAACTGCAGGCAAAAGCCCTGGTCGATATTNTTCCGCAAGGTAATTACTTCCTGATGGGCGGCTCGCCGGTAGATAACAACGCAAAGCTGTTCCGCGCCGGACAAATGAAAGTGTTAAAACCTTACGTTGATTCCGGAAAAATTAAAGTCGtt                                                                  >  1:594841/1‑275 (MQ=255)                                                                                                                                                  ggTATTAAGTAACGTTGTAAAAGAAGCCAAACAAGAAGGCATTAAAGTATTAGCTTACGACCGTATGATTAACGATGCGGATATCGATTTTTATATTTCTTTCGATAACGaaaa                                                                                                                                                                                                                                  <  2:632675/114‑1 (MQ=255)                                                                                                                                                         aGTAACGTTGTAAAAGAAGCCAAACAAGAAGGCATTAAAGTATTAGCTTACGACCGTATGATTAACGATGCGGATATCGATTTTTATATTTCTTTCGATaa                                                                                                                                                                                                                                        >  2:412217/1‑101 (MQ=255)                                                                                                                                                             aCGTTGTAAAAGAAGCCAAACAAGAAGGCATTAAAGTATTAGCTTACGACCGTATGATTAACGATGCGGATATCGATTTTTATATTtctttcgattacgatttttggtttatttcttgatttatgaccg                                                                                                                                                                                                        <  1:47403‑M2/129‑44 (MQ=255)                                                                                                                                                             aCGTTGTAAAAGAAGCCAAACAAGAAGGCATTAAAGTATTAGCTTACGACCGTATGATTAACGATGCGGATATCGATTTTTATATTTCTTTCGATAACGAAAAAGTCGGTGAACTGCAGGCAAAAGCCCTGGTCGATATTGTTCCGCAAGGTAATTACTTCCTGATGGGCGGCTCGCTGGTAGATAACAACGCCAAGCTGTTCCGCGCCGGACAAATGAAAGTGTTAAAACCTTACGTTGATTCCGGAAAAATTAAAGTCGTTGGTAACCAATgg                                                      >  1:367128/1‑275 (MQ=255)                                                                                                                                                             aCGTTGTAAAAGAAGCCAAACAAGAAGGCATTAAAGTATTAGCTTACGACCGTATGATTAACGATGCGGATATAGATTTTTATATTTCTTTCGATAACGaa                                                                                                                                                                                                                                    <  1:412224/101‑1 (MQ=255)                                                                                                                                                                 tGTAAAAGAAGCCAAACAAGAAGGCATTAAAGTATTAGCTTACGACCGTATGATTAACGATGCGGATATCGATTTTTATATTtctttcgattacgatttttggtttatttcttgatttatgaccgagat                                                                                                                                                                                                    >  2:47403‑M2/1‑82 (MQ=255)                                                                                                                                                                   tAACAGCAGCCAAACAAGAAGGCATTAAAGTATTAGCTAACGACCGTATGCTCAACGATGCGGATATCGATTTTAATATTTCTTTCGATACCGAAAAAGTCGGTGACCTGCAGGCCAAAGCCCTGATCGATATTGTTCCTCCAGGTCATTACTTCCTGATGAGCGGCTCGACGGTAGATATCAAGTCACAGCTGGTCCGCTCATGACAAATACAATTCATAAACACTAGCAGTGAATCCAGAAAAATTAAAAGAGCTGGTGACCAATGGGTTTAt                                                >  2:719910/1‑275 (MQ=255)                                                                                                                                                                         aagCCAAACAAGAAGGCATTAAAGTATTAGCTTACGACCGTATGATTAACGATGCGGATATCGATTTTTATATTtctttcgattacgatttttggtttatttcttgatttatgaccgagatcttacttttgtt                                                                                                                                                                                        <  1:605597‑M2/133‑60 (MQ=255)                                                                                                                                                                           gCCAAACAAGAAGGCATTAAAGTATTAGCTTACGACCGTATGATTAACGATGCGGATATCGATTTTTATATTTCTTTCGATAACGAAAAAGTCGGTGAACTGCAGGCAAAAGCCCTGGTCGATATTGTTCCGCAAGGTAATTACTTCCTGATGGGCGGCTCGCCGGTAGATAACAACGCCAAGCTGTTCCGCGCCGGACAAATGAAAGTGTTAAAACCTTACGTTGATTCCGGAAAAATTAAAGTCGt                                                                   >  1:4958/1‑248 (MQ=255)                                                                                                                                                                           gCCAAACAAGAAGGCATTAAAGTATTAGCTTACGACCGTATGATTAACGATGCGGATATCGATTTTTATATTTCTTTCGATAACGAAAAAGTCGGTGAACTGCAGGCAAAAGCCCTGGTCGATATTGTTCCGCAAGGTAATTACTTCCTGATGGGCGGCTCGCCGGTAGATAACAACGCCAAGCTGTTCCGCGCCGGACAAATGAAAGTGTTAAAACCTTACGTTGATTCCGGAAAAATTAAAGTCGTTGGTGACCAATGGGTTGATGGCTGGta                                        >  1:285154/1‑274 (MQ=255)                                                                                                                                                                             cAAACAAGAAGGCATTAAAGTATTAGCTTACGACCGTATGATTAACGATGCGGATATCGATTTTTATATTtctttcgattacgatttttggtttatttcttgatttatgaccgagatcttacttttgttgcgc                                                                                                                                                                                    >  2:605588‑M2/1‑70 (MQ=255)                                                                                                                                                                               aactaaaagGCATTAAAGTATTAGCTTACGACCGTATGATTAACGATGTGGAGATCGATTTTTATATTGCTTTCGATAACGAAAAAGTCGGTGAACTGCAGGCAAAAGCCCTGGTCGATATTGTTCCGCAAGGTAATTACTTCCTGATGGGCGGCTCGCCGGTAGATAACAACGCCAAGCTGTTCCGCGCCGGACAAATGAAAGTGTTAAAACCTTACGTTGATTCCGGAAAAATTAAAGTCGTTGGt                                                               <  2:4958/242‑1 (MQ=255)                                                                                                                                                                                          aTTAAAGTATTAGCTTACGACCGTATGATTAACGATGCGGATATCGATTTTTATATTTCTTTCGATAACGAAAAAGTCGGTGa                                                                                                                                                                                                                         >  2:491078/1‑83 (MQ=255)                                                                                                                                                                                            tAAAGTATTAGCTTACGACCGTATGATTAACGATGCGGATATCGATTTTTATATTTCTTTCGATAACGAAAAAGTCGGTGAACTGCAGGCAAAAGCCCCGGTCGATATTGTTCCGCAAGGTAATTACTTCCTGATGGGCGGCTCGCCGGTAGATAACAACGc                                                                                                                                        >  1:408232/1‑162 (MQ=255)                                                                                                                                                                                              aaGTATTAGCTTACGACCGTATGATTAACGATGCGGATATCGATTTTTATATTCTTTTATATAACGAGAAAGTCGGTGAACTg                                                                                                                                                                                                                     <  1:491085/83‑1 (MQ=255)                                                                                                                                                                                                gtagtaGCTTACGACAGTATGAGTACCAATGCGGATATCGATTTTTATATTTCTTTCGATAACGAAAAAGTCGATGAACTGAAAGGAAAAGCCATGGTGGATATTGTACCGCAAGGTAATTACTTCCTGATGGGCGGCTCGCCGGAAGATAACAAGGCCAAg                                                                                                                                    <  2:408225/162‑1 (MQ=255)                                                                                                                                                                                                   ttAGCTTACGACCGTATGATTAACGATGCGGATATCGATTTTTATATTTCTTTCGATAACGAAAAAGTCGGTGAACTGCAGGCAAAAGCCCTGGTCGATATTGTTCCGCAAGGTAATTACTTCCTGATGGGCGGCTCGCCGGTAGATAACAANGCCAAGCTGTTCCGCGCCGGACAAATGAAAGTGTTAAAACCTTACGTTGATTCCGGAAAAATTAAAGTCGTTGGTGACCAATGGGTTGATGGCTGGTTACCGGAAAACGCATTGAAAATCAt                >  1:596057/1‑275 (MQ=255)                                                                                                                                                                                                   ttAGCTTACGACCGTATGATTAACGATGCGGATATCGATTTTTATATTTCTTTCGATAACGAAAAAGTCGGTGAACTGCAGGAAAAAGCCCTGGTCGATATTGTTCCGCAGGGTAATTACTTCCTGATGGGCGGCTCGCCGGTAGATAACAACGCCAAGCTGTTCCGCGCCGGACAAATGAAAGTGTTAAAACCTTACGGTGATTCCGGAAAAATTAAAGTCGTTGGTGACCAATGGGTTGATGGCTGGTTACCGGAAAACGACTTGAAAATTa                 >  1:412048/1‑274 (MQ=255)                                                                                                                                                                                                       attccGACCTTATGATTAACGATCCGGATTTCGGTTTTTTTATTTCTTTCGATAACGAAAAAGTCGTTGAACTGCAGGCAAAAGCCCTGGTCGATATTGTTCCGCAAGGTAATTACTTCCTGATGGGCGGCTCGCCGGTAGATAACAACGCCAAGCTGTTCCGCGCCGGACAAATGAAAGTGTTAAAACCTTACGTTGATTCCGGAAAAATTAAAGTCGTTGGTGACCAATGGGTTGATGGCTGGTTACCGGAAAACGCATTGAAAATTATGGaa            <  2:665196/271‑1 (MQ=255)                                                                                                                                                                                                           cGACCGTATGATTAACGATGCGGATATCGATTTTTATATTTCTTTCGATAACGAAAAAGTCGGTGAACTGCAGGCAAAAGCCCTGGTCGATATTGTTCCGCAAGGTAATTACTTCCTGATGGGCGGCTCGCCGGTAGATAACAACGCCAAGCTGTTCCGCGCTGTACAAATGACAgt                                                                                                          >  2:424807/1‑177 (MQ=255)                                                                                                                                                                                                           cGACCGTATGATTAACGATGCGGATATCGATTTTTATATTTCTTTCGATAACGAAAAAGTCGGTGAACTGCAGGCAAAAGCCCTGGTCGATATTGTTCCGCAAGGTAATTACTTCCTGATGGGCGGCTCGCCGGTAGATAACAACGCCAAGCTGTTCCGCGCCGGACaaa                                                                                                                 >  1:246897/1‑170 (MQ=255)                                                                                                                                                                                                           cGACCGTATGATTAACGATGCGGATATCGATTTTTATATTTCTTTCGATAACGAAAAAGTCGGTGAACTGCAGGCAAAAGCCCTGGTCGATATTGTTCCGCAAGGTAATTACTTCCTGATGGGCGGCTCGCCGGTAGATAACAACGCCAAGCTGTTCCGCGCCGGACAAATGAAAGTGTTAAAACCTTACGTTGAtt                                                                                      >  2:569656/1‑197 (MQ=255)                                                                                                                                                                                                               tgTATGATTAACGATGCGGATATCGATTTTTATATTTCTTTCGATAACGAAAAAGTCGGTGAACTGCAGGCAAAAGCCGTGGTCGATATTGTTCCGCAAGGTAATTACTTCCTGATGGGCGGCTCGCCGGTAGATAACAACGCCAAGCTGTTCCGCGCCGGACAAATGAAAGTGTTa                                                                                                      <  1:424814/176‑1 (MQ=255)                                                                                                                                                                                                               cGTATGATTAACGATGCGGATATCGATTTTTATATTTCTTTCGATAACGAAAAAGTCGGTGAACTGCAGGCAAAAGCCCTGGTCGATATTGTTCCGCAAGGTAATTACTTCCTGATGGGCGGCTCGCCGGTAGATAACAACGCCAAGCTGTTCCGCGCCGGACAAATGaa                                                                                                             <  2:246892/170‑1 (MQ=255)                                                                                                                                                                                                               cGTATGATTAACGATGCGGATATCGATTTTTATATTTCTTTCGATAACGAAAAAGTCGGTGAACTGCAGGCAAAAGCCCTGGTCGATATTGTTCCGCAAGGTAATTACTTCCTGATGGGCGGCTCGCCGGTAGATAACAACGCCAAGCTGTTCCGCGCCGGACAAATGAAAGTGTTATAACCTTACGTTGATTCCgg                                                                                  <  1:569665/197‑1 (MQ=255)                                                                                                                                                                                                                 tATGATTAACGATGCGGATATCGATTTTTATATTTCTTTCGATAACGAAAAAGTCGGTGAACTGCAGGCaaa                                                                                                                                                                                                             >  2:504455/1‑72 (MQ=255)                                                                                                                                                                                                                 tATGATTAACGATGCGGATATCGATTTTTATATTTCTTTCGATAACGAAAAAGTCGGTGAACTGCAGGCAAAAGccc                                                                                                                                                                                                        >  1:633150/1‑77 (MQ=255)                                                                                                                                                                                                                 tATGATTAACGATGCGGATATCGATTTTTATATTTCTTTCGATAACGAAAAAGTCGGTGAACTGCAGGCAAAAGCCCTGGTCGATATTGTTCCGCAAGGTAATTACTTCCTGATGGGCGGCTCGCCGGTAGATAACAACGCCAAGCTGTTCCGCGCCGGACAAATGAAAGTGTTAAAACCTTACGTTGATTCCGGAAAAATTAAAGTCGTTGGTGAc                                                            >  1:393691/1‑217 (MQ=255)                                                                                                                                                                                                                 tATGATGAACGATTCGGATATCGATTTTTATATTTCTTACGATACGGAAAAAGTCGATGAACGCCATGCATAAGCCCTGGTCGATCTTCTTCCGCAAGGTAATTACTTCCTGTTGCGCATCCCGCCCTTAGATAACAACGCCATGCTGTTCCGCGCCGGACAAATGAAAGTGTTAAAACCTTACATTGATACCGGACAAATCAAAGTCGTTGGTGACCAAACGGTTAACGGCGGGTTCCCGGCAAACGCTNTAAAAATTATTTAAAACACCCTaa  >  2:421111/1‑275 (MQ=255)                                                                                                                                                                                                                     aTTAACGATGCGGATATCGATTTTTATATTTCTTTCGATAACGCAAAGGTAGGTGATCTGCAGGCAAAAGcc                                                                                                                                                                                                         <  1:504462/72‑1 (MQ=255)                                                                                                                                                                                                                     aTTAACGATGCGGATATCGATTTTTATATTTCTTTCGATAACGAAAAAGTCGGTGAACTGCAGGCAAAAGCCCTGGt                                                                                                                                                                                                    <  2:633141/77‑1 (MQ=255)                                                                                                                                                                                                                     aTTAACGATGCGGATATCGATTTTTATATTTCTTTCGATAACGAAAAAGTCGGTGAACTGCAGGCAAAAGCCCTGGTCGATATTGTTCCGCAAGGTAATTACTTCCTGATGGGCGGCTCGCCGGTAGATAACAACGCCAAGCTGTTCCGCGCCGGACAAATGAAAGTGTTAAAACCTTACGTTGATTCCGGAAAAATTAAAGTCGTTGGTGACCAAt                                                        <  2:393684/217‑1 (MQ=255)                                                                                                                                                                                                                        aaCGATGCGGATATCGATTTTTATATTTCTTTCGATAACGAAAAAGTCGGTGAACTGCAGGCAAAAGCCCTGGTCGATATTGTTCCGCAAGGt                                                                                                                                                                                 >  2:226283/1‑93 (MQ=255)                                                                                                                                                                                                                           gATGCGGATATCGATTTTTATATTTCTTTCGATAACGAAAAAGTCGGTGAACTGCAGGCAAAAGCCCTGGTCGATATTGTTCCGCAAGGTAATTACTTCCTGATGGGCGGCTc                                                                                                                                                          >  1:52323/1‑113 (MQ=255)                                                                                                                                                                                                                            aTGCGGATATCGATTTTTATATTTCTTTCGATAACGAAAAAGTCGGTGAACTGCAGGCAAAAGCCCTGGTCGATATTGTTCCGCAAGGTAAtt                                                                                                                                                                             <  1:226288/93‑1 (MQ=255)                                                                                                                                                                                                                               cGGATATCGATTTTTATATTTCTTTCGATAACGAAAAAGTCGGTGAACTGCAGGCAAAAGCCCTGGTCGATATTGTTCCGCAAGGTAATTACTTCCTGATGGGCGGCTCGCCg                                                                                                                                                      <  2:52323/113‑1 (MQ=255)                                                                                                                                                                                                                                    atCGATTTTTATATTTCTTTCGATAACGAAAAAGTCGGTGAACTGCAGGCaaa                                                                                                                                                                                                             >  1:255913/1‑53 (MQ=255)                                                                                                                                                                                                                                        aTTTTTATATTTCTTTCGATAACGAAAAAGTCGGTGAACTGCAGGCAAAAGcc                                                                                                                                                                                                         <  2:255908/53‑1 (MQ=255)                                                                                                                                                                                                                                            ttATATTTCTTTCGATAACGAAAAAGTCGGTGAACTGCAGGCAAAAGCCCTGGTCGATATTGTTCCGCAAGGTAATTACTTCCTGATGGGCGGCTCGCCGGTAGATAACAACGCCAAGCTGTTCCGCGCCGGACAAATGAAAgt                                                                                                          >  2:295564/1‑144 (MQ=255)                                                                                                                                                                                                                                                atTTCTTTCGATAACGAAAAAGTCGGTGAACTGCAGGCAAAAGCCCTGGTCGATATTGTTCCGCAAGGTAATTACTTCCTGATGGGCGGCTCGCCGGTAGATAACAACGCCAAGCTGTTCCGCGCCGGACAAATGAAAGTGTTa                                                                                                      <  1:295570/144‑1 (MQ=255)                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                  ATATCTTTGTGAAAAAGGCAGAATCTCTCGGCGCGAAAGTATTTGTACAGTCTGCAAATGGCAATGAAGAAACACAAATGTCGCAGATTGAAAACATGATAAACCGGGGTGTCGATGTTCTTGTCATTATTCCGTATAACGGTCAGGTATTAAGTAACGTTGTAAAAGAAGCCAAACAAGAAGGCATTAAAGTATTAGCTTACGACCGTATGATTAACGATGCGGATATCGATTTTTATATTTCTTTCGATAACGAAAAAGTCGGTGAACTGCAGGCAAAAGCCCTGGTCGATATTGTTCCGCAAGGTAATTACTTCCTGATGGGCGGCTCGCCGGTAGATAACAACGCCAAGCTGTTCCGCGCCGGACAAATGAAAGTGTTAAAACCTTACGTTGATTCCGGAAAAATTAAAGTCGTTGGTGACCAATGGGTTGATGGCTGGTTACCGGAAAACGCATTGAAAATTATGGAAAACGCGCTAA  >  CP009273/3724624‑3725106

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.