New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3894523	34 (0.880)	4 (0.110)	4/294	NT	10.1%	coding (1058/1617 nt)	bglH	carbohydrate‑specific outer membrane porin, cryptic
	?	CP009273	= 3894651	39 (1.080)					coding (930/1617 nt)	bglH	carbohydrate‑specific outer membrane porin, cryptic

GCGAACAACCGCACGAATAGATTCGAAATCAGAGTGGGCGCCTGTTTCGTAGCTATATATATCGTTACCGAAGGAGTAAACAATCGCGTTAGCTACAATGAAATGATCGCCAATATAGGCTTCGCCCTGCGAAGTCAGACGTACCGCTGTTCCGCCGGTGTGATCACCATAATAACGACCATTAAAGGTGGTAAATGGACTTGCGCCAGCATAACGGCCAAAGTTACTGGCGATAGAGTTATTCGCGACCAGGAAGGAGAATTCGTTGAAGCCACCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3894246‑3894523 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagccaccttAATGGTAAGTGGTCGTTATGTCACGGCAAACGAAAGCGCATCGGAAAAAGATAATCAGGATAATAACGGGTATTATGACTGGAAAGATACCTGGATGTTTGGCACATCTTTAACGCAGAAATTTGATAAAGGTGGCTTCAACGAATTCTCCTTCCTGGTCGCGAATAACTCTATCGCCAGTAACTTTGGCCGTTATGCTGGCGCAAGTCCATTTACCACCTTTAATG  <  CP009273/3894651‑3894425                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GCGAACAACCGCACGAATAGATTCGAAATCAGAGTGGGCGCCTGTTTCGTAGCTATATATATCGTTACCGAAGGAGTAAACAATCGCGTTAGCTACAATGAAATGATCGCCAATATAGGCTTCGCCCTGCGAAGTCAGACGTACCGCTGTTCCGCCGGTGTGATCACCATAATAACGACCATTAAAGGTGGTAAATGGACTTGCGCCAGCATAACGGCCAAAGTTACTGGCGATAGAGTTATTCGCGACCAGGAAGGAGAATTCGTTGAAGCC                                                                                                                                                                                                                                          >  1:307958/1‑273                                                                                                                             CCCTGCGAAGTCAGACGTACCGCTGTTCCGCCGGTGTGATCACCATAATAACGACCATTAAAGGTGGTAAATGGACTTGCGCCAGCATAACGGCCAAAGTTACTGGCGATAGAGTTATTCGCGACCAGGAAGGAGAATTCGTTGAAG                                                                                                                                                                                                                                            <  2:345175/147‑1                                                                                                                                                                                           GGTGGTAAATGGACTTGCGCCAGTATAAAAGCCAAAGTTACTGGCGATAGAGTTATTCGCGACCAGGAAGGAGAATTCGTTGAAGCCACCTTAATGGTAAGTGGTCGTTATGTCACGGCAACCGAAAGCGCATCGGAAAAAGATAATCAGGATAATAACGGGTATTATGACTGGAAAGATACCNGGATGTTTGGCCCATCTTTAAC                                                                                                                   >  1:508864/1‑206                                                                                                                                                                                               ggAAATGGACTTGCGGCAGCATAACGGCCAAAGTTACTGGCGATAGAGTTATTCGCGACCAGGAAGGGGAATTCGTTGAAGCCACCTTAATGGTAAGTGGTCGTTATGTCACGGCAAACGAAAGCGCATCGGAAAAAGATAATCAGGATAATAACGGGTATTATGACTGGAAAGAGACCTGGATGTTTGGCACATCTTTAACGCAG                                                                                                               <  2:508857/204‑1                                                                                                                                                                                                         TTGCGCCAGCATAACGGCCAAAGTTACTGGCGATAGAGTTATTCGCGACCAGGAAGGAGAATTCGTTGAAGCCACCTTAATGGTAAGTGGTCGTTATGTCACGGCAAACGAAAGCGCATCGGAAAAAGATAATCAGGATAATAACGGGTATTATGACTGGAAAGATACCTG                                                                                                                                        >  1:40966/1‑171                                                                                                                                                                                                             GCCAGCATAACGGCCAAAGTTACTGGCGATAGAGTTATTCGCGACCAGGAAGGAGAATTCGTTGAAGCCACCTTAATGGTAAGTGGTCGTTATGTCACGGCAAACGAAAGCGCATCGGAAAAAGATAATCAGGATAATAACGGGTATTATGACTGGAAAGATACCTGGATG                                                                                                                                    <  2:40966/171‑1                                                                                                                                                                                                                                                                             AAGCCACCTTAATGGTAAGTGGTCGTGATGTCACAGCAAACGAAAGCGCATCGGAAAAAGATAATCAGGATAATAACGGGTATTATGACTGGAAAGATACCTGGATGTTTGGCACATCTTTAACGCAGAAATTTGATAAAGGTGGCTTCAACGAATTCTCCTTCCTGGTCGCGAATAACTCTANCGCCAGTANCTTTGGCCGTTATGCTGGCGCAAGTCCATTTACCACCTTTAATG  >  1:465218/1‑237                                                                                                                                                                                                                                                                               GCCACCTTAATGGTAAGTGGTCGTTATGTCACGGCAAACGAAAGCGCATCGGAAAAAGATAATCAGGATAATAACGGGTATTATGACTGGAAAGATACCTGGATGTTTGG                                                                                                                               <  2:181862/110‑1                                                                                                                                                                                                                                                                                   CCTTAATGGTAAGTGGTCGTTATGTCACGGCAAACGAAAGCGCATCGGAAAAAGA                                                                                                                                                                                  >  1:629698/1‑55                                                                                                                                                                                                                                                                                   CCTTAATGGTAAGTGGTCGTTATGTCACGGCAAACGAAAGCGCATCGG                                                                                                                                                                                         >  1:86797/1‑48                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GCGAACAACCGCACGAATAGATTCGAAATCAGAGTGGGCGCCTGTTTCGTAGCTATATATATCGTTACCGAAGGAGTAAACAATCGCGTTAGCTACAATGAAATGATCGCCAATATAGGCTTCGCCCTGCGAAGTCAGACGTACCGCTGTTCCGCCGGTGTGATCACCATAATAACGACCATTAAAGGTGGTAAATGGACTTGCGCCAGCATAACGGCCAAAGTTACTGGCGATAGAGTTATTCGCGACCAGGAAGGAGAATTCGTTGAAGCCACCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3894246‑3894523 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagccaccttAATGGTAAGTGGTCGTTATGTCACGGCAAACGAAAGCGCATCGGAAAAAGATAATCAGGATAATAACGGGTATTATGACTGGAAAGATACCTGGATGTTTGGCACATCTTTAACGCAGAAATTTGATAAAGGTGGCTTCAACGAATTCTCCTTCCTGGTCGCGAATAACTCTATCGCCAGTAACTTTGGCCGTTATGCTGGCGCAAGTCCATTTACCACCTTTAATG  <  CP009273/3894651‑3894425

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.