New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 391389118 (0.470)7 (0.190) 6/304 NT 23.2% coding (358/471 nt) atpF F0 sector of membrane‑bound ATP synthase, subunit b
?CP009273 = 3914106 29 (0.780)coding (143/471 nt) atpF F0 sector of membrane‑bound ATP synthase, subunit b

CGTAATAAATTCAGACATCAGCCCCTCCCTCCTTACAGTTCAGCGACAAGTTTATCCACGATGTCGCTGTTAGCAGCTTCATCCACGGAACGTTCGATGATCTTCTCGGCGCCAGCAACAGCCAGGATAGCAACTTGCTTACGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3913746‑3913891
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcagAACGAGCACATAAGGACCTTGACCTTGCAAAGGCCAGCGCGACCGACCAGCTGAAAAAAGCGAAAGCGGAAGCCCAGGTAATCATCGAGCAGGCGAACAAACGCCGCTCGCAGATTCTGGACGAAGCGAAAGCTGAGGCAGAACAGGAACGTACTAAAATCGTGGCCCAGGCGCAGGCGGAAATTGAAGCCGAGCGTAAACGTGCCCGTGAAGAGCTGCGTAAGCAAGTTGCTATCCTGGCTGTTGCTGGCGCCGAGAAGATCATCGAACG  <  CP009273/3914106‑3913836
                                                                                                                                                                                                                                                                                                                                                                                                                                 
CGTAATAAATTCAGACATCAGCCCCTCCCTCCTTACAGTTCAGCGACAAGTTTATCCACGATGTCGCTGTTAGCAGCTTCATCCACGGAACGTTCGATGATCTTCTCGGCGCCAGCAACAGCCAGGATAGCAACTTGCTTAC                                                                                                                                                                                                                                                                                     >  2:487180/1‑142
    ATAAATTCAGACATCAGCCCCTCCCTCCTTACAGTTCAGCGACAAGTTTATCCACGATGTCGCTGTTAGCAGCTTCATCCACGGAACGTTCGATGATCTTCTCGGCGCCAGCAACAGCCAGGATAGCAACTTGCTTACGCAG                                                                                                                                                                                                                                                                                 <  1:487187/142‑1
                                     GTTCAGCGACAAGTTTATCGACGATGTCGCTGTTAGCAGCTTCATCCACGGAACGTTCGATGATCTTCTCGGCGCCAGCAACAGCCAGGATAGCAACTTGCTTACGCAGAACGAGCACATAAGGACCTTGACCTTGCAAAGGCCAGCGCAACCGACCAGCTGAAAAAAGCGAAAGCGGAAGCCCAGGTAATCATCGAGCAGGCGAACAAACGCCGCTCGCAGATTCT                                                                                                                                                           >  1:570212/1‑227
                                         AGCGACAAGTTTATCCACGATGTCGCTGTTAGCAGCTTCATCCACGGAACGTTCGATGATCTTCTCGGCGCCAGCAACAGCCAGGATAGCAACTTGCTTACGCAGAACGAGCACATAAGGACCTTGACCTTGCAAAGGCCAGCGCGACCGACCAGCTGAAAAAAGCGAAAGCGGAAGCCCAGGTAATCATCGAGCAGGCGAACAAACGCCGCTCGCAGATTCTGGAC                                                                                                                                                       <  2:570203/227‑1
                                                           GATGTCGCTGTTAGCAGCTTCATCCACGGAACGTTCGATGATCTTCTCGGCGCCAGCAACAGCCAGGATAGCAACTTGCTTAC                                                                                                                                                                                                                                                                                     >  1:464190/1‑83
                                                             TGTCGCTGTTAGCAGCTTCATCCACGGAACGTTCGATGATCTTCTCGGCGCCAGCAACAGCCAGGATAGCAACTTGCTTACG                                                                                                                                                                                                                                                                                    <  2:100416/82‑1
                                                               TCGCTGTTAGCAGCTTCATCCACGGAACGTTCGATGATCTTCTCGGCGCCAGCAACAGCCAGGATAGCAACTTGCTTACGCAG                                                                                                                                                                                                                                                                                 <  2:464183/83‑1
                                                                            atgaagCCACGGAACGTTCGATGATCTTCGAGGCGCCAGCAACAGCCAGGATAGCAACTTGCTTACGCAGAACGAGCACATAAGGAGCTTGACCTTGCAAAGGCCAGCGCGACCGACCAGCTGAAAAAAGCGAAAGCGGAAGCCCAGGTAATCATCGAGCAGGCGAACAAACGCCGCTCGCAGATTCTGGACGAAGCGAAAGCTGAGGCAGAACAGGAACGTACTAAAATCGTGGCCCAGGCGCAGGCGGAAATTGAAGCCGAGCGTAAACGTGC                                                                    <  2:712508/269‑1
                                                                               CATCCACGGAACGTTCGATGATCTTCTCGGCGCCAGCAACAGCCAGGATAGCAACTTGCTTCCGCAGAAC                                                                                                                                                                                                                                                                              >  1:437722/1‑70
                                                                               CATCCACGGAACGTTCGATGATCTTCTCGGCGCCAGCAACAGCCAGGATAGCAACTTGCTTACGCAGAACGAGCACATAAGGACCTTGACCTTGCAAAGGCCAGCGCGACCGACCAGCTGAAAAAAGCGAAAGCGGAAGCCCAGGTAATCATCGAGCAGGCGAACAAACGCCGCTCGCAGATTCTGGACGAAGCGAAAGCTGAGGCAGAACAGGAACGTACTAAAATCGTGGCCCAGGCGCAGGCGGAAATTGAAGCCGAGCGTAAACGTGCCC                                                                  >  1:712518/1‑274
                                                                               CATCCACGGAACGTTCGATGATCTTCTCGGCGCCAGCAACAGCCAGGATAGCAACTTGCTTACGCAGAACGAGCACATAAGGACC                                                                                                                                                                                                                                                               >  2:52320/1‑85
                                                                                   CACGGAACGTTCGATGATCTTCTCGGCGCCAGCAACAGCCAGGATAGCAACTTGCTTCCGCAGAACGAGC                                                                                                                                                                                                                                                                          <  2:437715/70‑1
                                                                                   CACGGAACGTTCGATGATCTTCTCGGCGCCAGCAACAGCCAGGATAGCAACTTGCTTACGCAGAACGAGCACATAAGGACCTTGA                                                                                                                                                                                                                                                           <  1:52320/85‑1
                                                                                                                                              GCAGAACGAGCACATAAGGACCTTGACCTTGCAAAGGCCAGCGCGACCGACCAGCTGAAAAAAGCGAAAGCGGAAGCCCAGGTAATCATCGAGCAGGCGAACAAACGCCGCTCGCAGATTCTGGACGAAGCGAAAGCTGAGGCAGAACAGGAACGTACTAAAATCGTGGCCCAGGCGCAGGCGGAAATTGAAGCCGAGCGTAAACGTGCCCGTGAAGAGCTGCGTAAGCAAGTTGCTATCCTGGCTGTTGCTGGCGCCGAGAAGATCAACGAACG  >  1:332122/1‑275
                                                                                                                                               CAGAACGAGCACATAAGGTCCTTGACCTTGCAAAGGCCAGCGCGACCGACCAGCTGAAAAAAGCGAAAGCGGAAGCCCAGGTAATCATCGNGCAGGCGAACAAACGCCGCTCGCAGATTCTGGACGAAGCGAAAGCTGAGGCAGAACAGGAACGTACTAAAATCGTGGCCCAGGCGCAGGCGGAAATTGAAGCCGAGCGTAAACGTGCCCGTGAAGAGCTGCGTAAGCACGTTGCTATCCTGGCTTTTGCTGGCGCCGAGAAGATCACCGAACG  <  1:515100/274‑1
                                                                                                                                                                                                                                                                                                                                                                                                                                 
CGTAATAAATTCAGACATCAGCCCCTCCCTCCTTACAGTTCAGCGACAAGTTTATCCACGATGTCGCTGTTAGCAGCTTCATCCACGGAACGTTCGATGATCTTCTCGGCGCCAGCAACAGCCAGGATAGCAACTTGCTTACGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3913746‑3913891
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcagAACGAGCACATAAGGACCTTGACCTTGCAAAGGCCAGCGCGACCGACCAGCTGAAAAAAGCGAAAGCGGAAGCCCAGGTAATCATCGAGCAGGCGAACAAACGCCGCTCGCAGATTCTGGACGAAGCGAAAGCTGAGGCAGAACAGGAACGTACTAAAATCGTGGCCCAGGCGCAGGCGGAAATTGAAGCCGAGCGTAAACGTGCCCGTGAAGAGCTGCGTAAGCAAGTTGCTATCCTGGCTGTTGCTGGCGCCGAGAAGATCATCGAACG  <  CP009273/3914106‑3913836

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.