New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3913891	18 (0.470)	7 (0.190)	6/304	NT	23.2%	coding (358/471 nt)	atpF	F0 sector of membrane‑bound ATP synthase, subunit b
	?	CP009273	= 3914106	29 (0.780)					coding (143/471 nt)	atpF	F0 sector of membrane‑bound ATP synthase, subunit b

TGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATAAATTCAGACATCAGCCCCTCCCTCCTTACAGTTCAGCGACAAGTTTATCCACGATGTCGCTGTTAGCAGCTTCATCCACGGAACGTTCGATGATCTTCTCGGCGCCAGCAACAGCCAGGATAGCAACTTGCTTACGCAGCTCTTCACGGGCACGTTTACGCTCGGCTTCAATTTCCGCCTGCGCCTGGGCCACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCCTGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGCAAGGTCAAGGTCCTTATGTGCTCGTTCTGCGGAAGCAAGGCCGTCAGCAATTTCTTTTTGACGTTTTTCGATGGCTGCCATT  >  CP009273/3913629‑3914162                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                                tGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATAAATTCAGACATCAGCCCCTCCCTCCTTACAGTTCAGCGACAAGTTTATCCACGATGTCGCTGTTAGCAGCTTCATCCACGGAACGTACGATGATCTGCTCGGCGCCAGCAACAGACAGCATAGCAACTCGCATACACAGCTCTTCACagg                                                                                                                                                                                                                                                                      >  1:448638/1‑274 (MQ=255)                                        cAGCATGTCCTGCCAGCGTTCTTCACTTTGGTGCTCGACCGCAAAGTAAAAAGCTGCTTTCGCGTAGTGGCGAGCTACCGTCATAAATTCAGACCTCAGCCCCTCCCTCCTTACAGGTCAGCGACAAGTTTATCCACGATGTCGCTGTTCGCAGCTTCATCCACGGAACGTTCGATGATCTTCTCGGCGCCAGCAACAGCCAGGATAGCAACTTGCTTACGCAGCTCTTCACGGGCACGTTTACGCTCGGCTTCAATTTCCGCCTGCGCCTGGGc                                                                                                                                                                                                                              <  2:657663/275‑1 (MQ=255)                                                         gTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCGTTGGCGTAGGGGCGAGCTACCGTAATAAATTCAGACATCAGCCCCTCCCTCCTTACAGTTCAGCGACAAGTTTATCCTCCATGTCGCTGTTAGCAGCTTCATCCACGGAACGTTCGATGATCTTCTCGGCGCCAGCAACAGCCAGGATAGCAACTTGCTTACGTAGCTCTTCACGGGCACGTTTACGCTCGGCTTCAATTACTGCATGCGCCTGGTCCACGACTTTAGTATGtt                                                                                                                                                                                                             >  2:674567/1‑275 (MQ=255)                                                             tACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATAAATTCAGACATCAGCCCCTCCCTCCTTACAGTTCAGCGACAAGTTTATCCACGATGTCGCTGTTAGCAGCTTCATCCACGGACCGTTCGATAATCTTCTCGGCACCAGCAACAGCCAGGATAGCACCTTGCTTACGCCGCCCTTCACGGGCACGATTACGATCGGCCTCAAGTTCCGCCGGCGCGTGGGCCACGACTTTTGCATGTTcttt                                                                                                                                                                                                         >  2:620338/1‑272 (MQ=255)                                                                      gtgtTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATAAATTCAGACCTCAGCCCCTCCCTCCTTACAGTTCAGCGACAAGTTTATCCACGATGTCGCTGTTAGCNGCTTCATCCACGGAACGTTCGATGATCTTCTCGGCGCCAGCAACAGCCAGGATAGCAACTTGCTTACGCAGCTCTTCACGGGCACGTTTACGCTCGGCTTCAATTTCCGCCTGCGCCTGGGCCACGATTTTAGTACGTTCCTGTTCTGCCTc                                                                                                                                                                                                <  1:612795/275‑1 (MQ=255)                                                                           cGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATAAATTCAGACATCAGCCCCTCCCTCCTTACAGTTCAGCGACAAGTTTATCCACGATGTCGCTGTTAGCAGCTGGATCCACGGAACGTTCGATGATCTTCTCGGCGCCAGCAACAGCCAGGATAGCAACTTGCTTACGCAGCTCTTCACGGGCACGTTTACGCTCGGCTTCAATTTCCGGCTGCGCCTGGGCCACGATTTTAGTACGTTCCTGTTCTGCCTCAGCtt                                                                                                                                                                                           <  1:674576/275‑1 (MQ=255)                                                                              cGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATAAATTCAGACATCAGCCCCTCCCTCCTTACAGTTCAGCGACAAGTTTATCCACGATGTCGCTGTTAGCAGCTTCATCCACGGAACGTTCGATGATCTTCTCGGCGCCAGCAACAGCAAGGATAGCAACTTGCTTACGCAGCTCTTCACGGGCACGTTTACGCTCGGCTTCAATTTCCGCCTGCGCCTGGGCCACGATTTTATTACGTTCCTGTTCTGCCGCAGCttt                                                                                                                                                                                          >  1:451474/1‑273 (MQ=255)                                                                                                  ttGGCGTAGGGGCGAGCTACCGTAATAAATTCAGACATCAGCCCCTCCCTCCTTACAGTTCAGCGACAAGTTTATCCACGATGTCGCTGTTAGCAGCTTCATCCACGGAACGTTCGATGATCTTCTCGGCGCCAGCAACAGCCAGGATAGCAACTTGCTTACGCAGCTCTTCACGGGCACGTTTACGCTCGGCTTCAATTTCCGCCTGCGCCTGGGCCACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAg                                                                                                                                                                    <  1:396336/275‑1 (MQ=255)                                                                                                  tgtgCGTAGGGGCGTGTTACCGTAATAAATTCAGACATCAGCCCCTCCCTCCTTACAGTTCAGCGACAAGTTTATCCACGATGTCGCTGTTAGCAGCTTCATCCACGGAACGTTCGNTGATCTTCTCGTCGCCAGCAACAGCCAGGATAGCAACTTGCTTACGCAGCTCTTCACGGGCACGTTTACGCTCGGCTTCAATTTCCGCCTGCGCCTGGGCCACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAg                                                                                                                                                                    <  1:656294/272‑1 (MQ=255)                                                                                                                          ataaATTCAGACATCAGCCCCTCCCTCCTTACAGTTCAGCGACAAGTTTATCCACGATGTCGCTGTTAGCAGCTTCATCCACGGAACGTTCGATGATCTTCTCGGCGCCAGCAACAGCCAGGATAGCAACTTGCTTACGCAG                                                                                                                                                                                                                                                                                 <  1:487187‑M1/142‑1 (MQ=255)                                                                                                                                                           gTTCAGCGACAAGTTTATCGACGATGTCGCTGTTAGCAGCTTCATCCACGGAACGTTCGATGATCTTCTCGGCGCCAGCAACAGCCAGGATAGCAACTTGCTTACGCAGaacgagcacataaggaccttgaccttgcaaaggccagcgcaaccgaccagctgaaaaaagcgaaagcggaagcccaggtaatcatcgagcaggcgaacaaacgccgctcgcagattct                                                                                                                                                           >  1:570212‑M1/1‑109 (MQ=255)                                                                                                                                                               aGCGACAAGTTTATCCACGATGTCGCTGTTAGCAGCTTCATCCACGGAACGTTCGATGATCTTCTCGGCGCCAGCAACAGCCAGGATAGCAACTTGCTTACGCAGaacgagcacataaggaccttgaccttgcaaaggccagcgcgaccgaccagctgaaaaaagcgaaagcggaagcccaggtaatcatcgagcaggcgaacaaacgccgctcgcagattctggac                                                                                                                                                       <  2:570203‑M1/227‑123 (MQ=255)                                                                                                                                                                      aGTTTATCCACGATGTCGCTGTTAGCAGTTTCATCCACGGAACGTTCGATGATCTTCTCGGCGCCAGCAACAGCCAGGATAGCAACTTGCTTACGCAGCTCTTCACGGGCACGTTTACGCTCGGCTTCAATTTCCGCCTGCGCCTGGGCCACGATGTTAGTACCTTCCTGGTCTACCTCAGCTNTCGCTTCGTCCAGCATCTGCGAGCGGCGTTTGTTCGCCTGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTAAGCTggtcggtagt                                                                                                >  1:553322/1‑272 (MQ=255)                                                                                                                                                                                     tCGCTGTTAGCAGCTTCATCCACGGAACGTTCGATGATCTTCTCGGCGCCAGCAACAGCCAGGATAGCAACTTGCTTACGCAG                                                                                                                                                                                                                                                                                 <  2:464183‑M1/83‑1 (MQ=255)                                                                                                                                                                                                  atgaagccacggaaCGTTCGATGATCTTCGAGGCGCCAGCAACAGCCAGGATAGCAACTTGCTTACGCAGaacgagcacataaggagcttgaccttgcaaaggccagcgcgaccgaccagctgaaaaaagcgaaagcggaagcccaggtaatcatcgagcaggcgaacaaacgccgctcgcagattctggacgaagcgaaagctgaggcagaacaggaacgtactaaaatcgtggcccaggcgcaggcggaaattgaagccgagcgtaaacgtgc                                                                    <  2:712508‑M1/269‑206 (MQ=255)                                                                                                                                                                                                     cATCCATGTGACGTTCGATGATCTTCGCGGCGCCAGACACAGCCAGGATACCAACTTGCTTACGCAGCTCTGCACGGGCACGTTTACGCTCGGCTTCAATTTCCGCCTGCGCCTGGGCCNCGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCCTGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGCAAGGTCAAGGTCCTTa                                                                    <  1:620347/272‑1 (MQ=255)                                                                                                                                                                                                     cATCCACGGAACGTTCGATGATCTTCTCGGCGCCAGCAACAGCCCGGATAGCAACTTGCTTACTCAGCTCTTCACGGGCACGGTTACCCTCGGCTTCAATTTCCGCCTGCGCCTGGGCCACGATTTTCGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCAAGCATCTGCGAGCGGCATTTGTTAGCCTGCTCGATGATTACCTGGGCTTCCGCGTTCGCTTTCTTCAGCTGATCGGTGGCGCTGGCCTTTGCATGTTGANTGTCCtctcta                                                                 >  2:58545/1‑270 (MQ=255)                                                                                                                                                                                                     cATCCACGGAACGTTCGATGATCTTCTCGGCGCCAGCAACAGCCAGGATAGCAACTTGCTTCCGCAGaac                                                                                                                                                                                                                                                                              >  1:437722‑M1/1‑67 (MQ=255)                                                                                                                                                                                                     cATCCACGGAACGTTCGATGATCTTCTCGGCGCCAGCAACAGCCAGGATAGCAACTTGCTTACGCAGaacgagcacataaggaccttgaccttgcaaaggccagcgcgaccgaccagctgaaaaaagcgaaagcggaagcccaggtaatcatcgagcaggcgaacaaacgccgctcgcagattctggacgaagcgaaagctgaggcagaacaggaacgtactaaaatcgtggcccaggcgcaggcggaaattgaagccgagcgtaaacgtgccc                                                                  >  1:712518‑M1/1‑67 (MQ=255)                                                                                                                                                                                                     cATCCACGGAACGTTCGATGATCTTCTCGGCGCCAGCAACAGCCAGGATAGCAACTTGCTTACGCAGaacgagcacataaggacc                                                                                                                                                                                                                                                               >  2:52320‑M1/1‑67 (MQ=255)                                                                                                                                                                                                       tCCACGGAACGTTCGATGATCTTCTCGGCGCCAGCAACAGCCAGGATAGCAACTTGCTTACGCAGCTCTTCACGGGCACGTTTACGCTCGGCTTCAATTTCCGCCTGCGCCTGGGCCACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGNTCGCCTGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGCAAGGTCAAGGTCCTTAtgtg                                                                >  1:517903/1‑274 (MQ=255)                                                                                                                                                                                                         cACTGAACGTTCGATGATCTTCTCGGCGCCAGCAACAGCCAGGATAGCAACTTTCTTACGCAGCTCTTCACGGGCACGTTTACGCTCGGCTTCAATTTCCGCCTGCGCCTGGGCCACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGGGGCGTTTGTTCGCCTGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGcaaggt                                                                               <  1:58546/257‑1 (MQ=255)                                                                                                                                                                                                         cACGGAACGTTCGATGATCTTCTCGGCGCCAGCAACAGCCAGGATAGCAACTTGCTTCCGCAGaacgagc                                                                                                                                                                                                                                                                          <  2:437715‑M1/70‑8 (MQ=255)                                                                                                                                                                                                         cACGGAACGTTCGATGATCTTCTCGGCGCCAGCAACAGCCAGGATAGCAACTTGCTTACGCAGaacgagcacataaggaccttga                                                                                                                                                                                                                                                           <  1:52320‑M1/85‑23 (MQ=255)                                                                                                                                                                                                                cgttcgttGATCTTCTCGGCGCCAGCAACAGCCAGGATAGCAACTTGCTTACGCAGCTCTTCACGGGCACGTTTACGCTCGGCTTCAATTTCCGCCTGCGCCTGGGCCACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCCTGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGCAAGGTCAAGGTCCTTATGTGCTCGTTctgc                                                      >  1:332122‑M2/1‑271 (MQ=255)                                                                                                                                                                                                                cGTTCGGTGATCTTCTCGGCGCCAGCAAAAGCCAGGATAGCAACGTGCTTACGCAGCTCTTCACGGGCACGTTTACGCTCGGCTTCAATTTCCGCCTGCGCCTGGGCCACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCCTGCNCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGCAAGGTCAAGGACCTTATGTGCTCGTTctg                                                       <  1:515100‑M2/274‑4 (MQ=255)                                                                                                                                                                                                                            ttctCGGCGCCAGCAACAGCCAGGATAGTAACTTGCTTACGCAGCTCTTCACGGGCACGTTTACGCTCGGCTTCAATTTCCGCCTGCGCCTGGGCCACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCCTGCTCGATGATTACCNGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGCAAGGTCAAGGTCCTTATGTGCTCGTTCTGCGGAAGCAAGGcc                                          >  1:531168/1‑275 (MQ=255)                                                                                                                                                                                                                                                 aGGATAGCAACTTGCTTACGCAGCTCTTCACGGGCACGTTTACGCTCGGCTTCAATTTCCGCCTGCGCCTGGGCCACGATTTTAGTACGTTCCTGTTATGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCCTGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGCAAGGTCAAGGTCCTTATGTGCTCGTTCTGCGGAAGCAAGGCCGTCAGCAATTTCTTTTTGACg                     <  1:395943/275‑1 (MQ=255)                                                                                                                                                                                                                                                             tGCTTACGCAGCTCTTCACAGGCACGTTTACGCTCGGCTTCAATTTCCGCCTGCGCCTGGGCCACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCCTGCTCGATGATTACATGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCt                                                                                             >  1:577347/1‑191 (MQ=255)                                                                                                                                                                                                                                                                 tACGCAGCTCTTCACGGGCACGTTTACGCTCGGCTTCAATTTCCGCCTGCGCCTGGGCCACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCCTGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGcc                                                                                         <  2:577338/191‑1 (MQ=255)                                                                                                                                                                                                                                                                    gCAGaacgagcacataaggaccttgaccttgcaaaggccagcgcgaccgaccagctgaaaaaagcgaaagcggaagcccaggtaatcatcgagcaggcgaacaaacgccgctcgcagattctggacgaagcgaaagctgaggcagaacaggaacgtactaaaatcgtggcccaggcgcaggcggaaattgaagccgagcgtaaacgtgcccgtgaagagctgcgtaagcaagttgctatcctggctgttgctggcgccgagaagatcaacgaacg  >  1:332122‑M1/1‑4 (MQ=255)                                                                                                                                                                                                                                                                     cAGaacgagcacataaggtccttgaccttgcaaaggccagcgcgaccgaccagctgaaaaaagcgaaagcggaagcccaggtaatcatcgngcaggcgaacaaacgccgctcgcagattctggacgaagcgaaagctgaggcagaacaggaacgtactaaaatcgtggcccaggcgcaggcggaaattgaagccgagcgtaaacgtgcccgtgaagagctgcgtaagcacgttgctatcctggcttttgctggcgccgagaagatcaccgaacg  <  1:515100‑M1/274‑272 (MQ=255)                                                                                                                                                                                                                                                                      aGCTCTTCACGGGCACGTTTACGCTCGGCTTCAATTTCCGCCTGCGCCTGGGCCACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCCTGCt                                                                                                                                                 >  2:516736/1‑130 (MQ=255)                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                                TGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATAAATTCAGACATCAGCCCCTCCCTCCTTACAGTTCAGCGACAAGTTTATCCACGATGTCGCTGTTAGCAGCTTCATCCACGGAACGTTCGATGATCTTCTCGGCGCCAGCAACAGCCAGGATAGCAACTTGCTTACGCAGCTCTTCACGGGCACGTTTACGCTCGGCTTCAATTTCCGCCTGCGCCTGGGCCACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCCTGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGCAAGGTCAAGGTCCTTATGTGCTCGTTCTGCGGAAGCAAGGCCGTCAGCAATTTCTTTTTGACGTTTTTCGATGGCTGCCATT  >  CP009273/3913629‑3914162

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.