New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	4297427 =	56 (1.460)	8 (0.210)	6/306	NT	12.4%	coding (190/930 nt)	alsK	D‑allose kinase
	?	CP009273	4297594 =	58 (1.550)					coding (23/930 nt)	alsK	D‑allose kinase

GCCTGTTTAATCATGCGGAAAATATCGACGAAGCATGGAGAATTATGACCGCGCAGATTCTGGCTGCAAAAAGCGAGGTACAGCCTCATGCAAAAACAGCATAACGTCGTAGCGGGCGTGGATATGGGGGCAACGCATATCCGCTTTTGTCTGCGGACAGCAGAAGGTGAAACGCTACACTGCGAAAAAAAGCGGACCGCAGAAGTCATTGCTCCCGGCCTGGTGTCGGGTATCGGCGAAATGATTGACGAGCAACTCAGGCGCTTTAACGCTCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/4297703‑4297427 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctACGACGTTATGCTGTTTTTGCATGAGGCTGTACCTCGCTTTTTGCAGCCAGAATCTGCGCGGTCATAATTCTCCATGCTTCGTCGATATTTTCCGCATGATTAAACAGGCCGGAAGTGCCGACGATAAAG  >  CP009273/4297594‑4297723                                                                                                                                                                                                                                                                                                                                                                                                                         gctTGTTTAATCATGCGGAAAATATCGACTAAGCATGGAGAATTATGACCGCGCAGATTCTGGCTGCAAAAAGCGAGGTACAGCCTCATGCAAAAACAGCATAACGTCGTAGCGGGCGTGGATATGGGGGCAACGCATATCCGCTTTTGTCTGCGGACAGCAGAAGGTGAAACGCTACACTGCGAAAAAAAGCGGACCGCAGAAGTCATTGCTCCCGGCCTGGTGTCGGGTATCGGCGAAATGATTGACGAGCAACTCAGGCGCTTTAACGCTCG                                                                                                                                      <  1:266937/272‑1                                     GGAGAATTATGACCGCGCAGATTCTGGCTGCAAAAAGCGAGGTACAGCCTCATGCAAAAACAGCATAACGTCGTAGCGGGCGTGGATATGGGGGCAACGCATATCCGCTTTTGTCTGCGGACAGCAGAAGGTGAAACGCTACACTGCGAAAAAAAGCGGACCGCAGAAGTCATTGCTCCCGGCCTGGTGTCGGGTATCGGCGAAATGATTGACGAGCAACTCAGGCGCTTTAACGCTCG                                                                                                                                      <  2:291479/239‑1                                                                         GCGAGGTACAGCCTCATGCAAAAACAGCATAACGTCGTAGCGGGCGTGGATATGGGGGCAACGCATATCCGCTTTTGTCTGCGGACAGCAGAAGGTGAAACGCTACACTGCGAAAAAAAGCGGACCGCAGAAGTCATTGCTCCCGGCCTGGTGTCGGGTATCGGCGAAATGATTGACGAGCAACTCAGGCGCTTTAACGCTCG                                                                                                                                      <  1:142272/203‑1                                                                                                                             TGGGGGCAACGCATATCCGCTTTTGTCTGCGGACAGCAGAAGGTGAAACGCTACACTGCGAAAAAAAGCGGACCGCAGAAGTCATTGCTCCCGGCCTGGTGTCGGGTATCGGCGAAATGATTGACGAGCAACTCAGGCGCTTTAACGCTCGC                                                                                                                                     >  1:602711/1‑152                                                                                                                                                                                                                ATTGCTCCCGGCCTGGTGTCGGGTATCGGCGAAATGATTGACGAGCAACTCAGGCGCTTTAACGCTCGCT                                                                                                                                    >  2:403249/1‑70                                                                                                                                                                                                                                         TCGGCGAAATGATTGACGAGCAACTCAGGCGCTTTAACGCTCGCTACGACGTTATGCTGTTTTTGCATGAGGCTGTACCTCGCTTTTTGCAGCCAGAATCTGCGCGGTCATAATTCTCCATGCTTCGTCGATATTTTCCGCATGATTAAACAGGCCGGAAGTGCCGACGAT      >  2:414274/1‑171                                                                                                                                                                                                                                         TCGGCGAAATGATTGACGAGCAACTCAGGCGCTTTAACGCTCGCTACGACGTTATGCTGTTTTTGCATGAGGCTGTACCTCGCTTTTTGCAGCCAGAATCT                                                                            >  1:381538/1‑101                                                                                                                                                                                                                                         TCGGCGAAATGATTGACGAGCAACTCAGGCGCTTTAACGCTCGCTACGACGTTATGCTGTTTTTGCATGAGGCTGTACCTCGCTT                                                                                            >  1:718062/1‑85                                                                                                                                                                                                                                          CGGCGAAATGATTGACGAGCAACTCAGGCGCTTTAACGCTCGCTACGACGTTATGCTGTTTTTGCATGAGGCTGTACCTCGCTTTTTGCAGCCAGAATCTGCGCGGTCATAATTCTCC                                                          >  1:205678/1‑118                                                                                                                                                                                                                                             CGAAATGATTGACGAGCAACTCAGGCGCTTTAACGCTCGCTACGACGTTATGCTGTTTTTGCATGAGGCTGTACCTCGCTTTTTGCAGCCAGAATCTGCGCGGTCATAATTCTCCATGCTTCGTCGATATTTTCCGCATGATTAAACAGGCCGGAAGTGCCGACGATAAAG  <  1:414281/171‑1                                                                                                                                                                                                                                             CGAAATGATTGACGAGCAACTCAGGCGCTTTAACGCTCGCTACGACGTTATGCTGTTTTTGCATGAGGCTGTACCTCGCTTTTTGCAGCCAGAATCTGCGC                                                                        <  2:381532/101‑1                                                                                                                                                                                                                                             CGAAATGATTGACGAGCAACTCAGGCGCTTTAACGCTCGCTACGACGTTATGCTGTTTTTGCATGAGGCTGTACCTCGCTTTTTG                                                                                        <  2:718052/85‑1                                                                                                                                                                                                                                              GAAATGATTGACGAGCAACTCAGGCGCTTTAACGCTCGCTACGACGTTATGCTGTTTTTGCATGAGGCTGTACCTCGCTTTTTGCAGCCAGAATCTGCGCGGTCATAATTCTCCATGC                                                      <  2:205674/118‑1                                                                                                                                                                                                                                                                                                                                                                                                                         GCCTGTTTAATCATGCGGAAAATATCGACGAAGCATGGAGAATTATGACCGCGCAGATTCTGGCTGCAAAAAGCGAGGTACAGCCTCATGCAAAAACAGCATAACGTCGTAGCGGGCGTGGATATGGGGGCAACGCATATCCGCTTTTGTCTGCGGACAGCAGAAGGTGAAACGCTACACTGCGAAAAAAAGCGGACCGCAGAAGTCATTGCTCCCGGCCTGGTGTCGGGTATCGGCGAAATGATTGACGAGCAACTCAGGCGCTTTAACGCTCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/4297703‑4297427 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctACGACGTTATGCTGTTTTTGCATGAGGCTGTACCTCGCTTTTTGCAGCCAGAATCTGCGCGGTCATAATTCTCCATGCTTCGTCGATATTTTCCGCATGATTAAACAGGCCGGAAGTGCCGACGATAAAG  >  CP009273/4297594‑4297723

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.