New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 430060568 (1.770)9 (0.240) 8/302 NT 11.2% coding (193/1533 nt) alsA fused D‑allose transporter subunits of ABC superfamily: ATP‑binding components
?CP009273 = 4300798 78 (2.110)intergenic (‑1/+126) alsA/alsB fused D‑allose transporter subunits of ABC superfamily: ATP‑binding components/D‑allose transporter subunit

TCATCTAGATCAACTTTCAAGCCCACGCGTAATAACATCATGGCGGCGCGGACACGCATTTCTCGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTACGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGTTATAGCTAATGTTATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/4300376‑4300605
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttattTATGGCCACGCCATATATATCGATGGCGGGGATCGGCAAGTCCTTTGGTCCGGTTCACGCATTAAAGTCGGTTAATTTAACG  <  CP009273/4300798‑4300717
                                                                                                                                                                                                                                                                                                                        
TCATCTAGATCAACTTTCAAGCCCACGCGTAATAACATCATGGCGGCGCGGACACGCATTTCTCGCCAGTCGATAATATTGACGCCACAGANTTTTTTCGTCAGATGACGAGCAATATATAAATTTTCCAGTACGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGTTATAGCTAATGTTATTTATGGCCACGCCATATATATCGATGGCGGGGATCGGCAAGTCCTT                                       <  1:565292/275‑1
                                                                               taACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTACGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCAGCTAATTTATGATCCAGCTTGTTATCGCTAATGT                                                                                        >  2:509678/3‑147
                                                                               TGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTACGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGTTATAGCTAATGTTA                                                                                      >  2:543242/1‑149
                                                                                 ACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTACGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGTTATAGCTAATGT                                                                                        >  2:141906/1‑145
                                                                                   GCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTACGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGTTATAGCTAATG                                                                                         <  2:98078/142‑1
                                                                                   GCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTACGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTGGCGATCCAGCTTGTTATAGCTAATGTTATT                                                                                    <  1:509685/147‑1
                                                                                     CACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTACGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGTTATAGCTAATGTTATT                                                                                    <  1:141907/145‑1
                                                                                          ATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTACGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGTTATAGCTAATG                                                                                         <  1:316696/135‑1
                                                                                                                          ATTTTCCAGTACGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGTTATAGCTAATGTTAT                                                                                     >  2:388836/1‑107
                                                                                                                             TTCCAGTACGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGTTATAGCTAATGT                                                                                        >  1:554534/1‑101
                                                                                                                                 AGTACGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGTTATAGCTAATGTTATT                                                                                    <  2:554525/101‑1
                                                                                                                                        TTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCAGCTACTTTATGATCCAGCGTGGTATAGCTAATGT                                                                                        >  2:328408/1‑90
                                                                                                                                            TTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGTTATAGCTAATGTTATT                                                                                    <  1:328414/90‑1
                                                                                                                                                  AATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGTTATAGCTAATGTTATTTATGGCCACGCCATATATATCGATGGCG                                                        >  2:558811/1‑112
                                                                                                                                                      ACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGTTATAGCTAATGTTATTTATGGCCACGCCATATATATCGATGGCGGGGA                                                    <  1:558820/112‑1
                                                                                                                                                                          AATCCCGTTACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGTTATAGCTAATG                                                                                         <  1:679779/55‑1
                                                                                                                                                                                  TACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGTTATAGCTAATGTTATTTATGGCCACGCCATATATATCGATGGCGGGGATCGGCAAGTCCTTTGGTCCGGTTCACGCATTAAAGTCGGTTAATTT      >  1:176863/1‑130
                                                                                                                                                                                   ACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGTTATAGCTAATGTTATTTATGGCCACGCCATATATATCGATGGCGGGGATCGGCAAGTCCTTTGGTCCG                                >  2:200109/1‑103
                                                                                                                                                                                      GAGTTGTGCCGCTAATTTATGATCCAGCTTGTTATAGCTAATGTTATTTATGGCCACGCCATATATATCGATGGCGGGGATCGGCAAGTCCTTTGGTCCGGTTCACGCATTAAAGTCGGTTAATTTAACG  <  2:176860/130‑1
                                                                                                                                                                                       AGTTGTGCCGCTAATTTATGATCCAGCTTGTTATAGCTAATGTTATTTATGGCCACGCCATATATATCGATGGCGGGGATCGGCAAGTCCTTTGGTCCGGTTC                            <  1:200112/103‑1
                                                                                                                                                                                            TGCCGCTAATTTATGATCCAGCTTGTTATAGCTAATGT                                                                                        >  1:695777/1‑38
                                                                                                                                                                                            TGCCGCTAATTTATGATCCAGCTTGTTATAGCTAATGT                                                                                        >  2:348514/1‑38
                                                                                                                                                                                                GCTAATTTATGATCCAGCTTGTTATAGCTAATGTTATT                                                                                    <  2:695768/38‑1
                                                                                                                                                                                                GCTAATTTATGATCCAGCTTGTTATAGCTAATGTTATT                                                                                    <  1:348520/38‑1
                                                                                                                                                                                                         TGATCCAGCTTGTTATAGCTAATGTTATTTATGGCCACGCCATATATATCGATGGCGGGGATCGGCAAGTCCTTTGGTCCGGTTCACGCATTAAAGTCGGTTAATTT      >  1:550196/1‑107
                                                                                                                                                                                                             CCAGCTTGTTATAGCTAATGTTATTTATGGCCACGCCATATATATCGATGGCGGGGATCGGCAAGTCCTTTGGTCCGGTTCACGCATTAAAGTCGGTTAATTTAACG  <  2:550187/107‑1
                                                                                                                                                                                                                                                                                                                        
TCATCTAGATCAACTTTCAAGCCCACGCGTAATAACATCATGGCGGCGCGGACACGCATTTCTCGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTACGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGTTATAGCTAATGTTATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/4300376‑4300605
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttattTATGGCCACGCCATATATATCGATGGCGGGGATCGGCAAGTCCTTTGGTCCGGTTCACGCATTAAAGTCGGTTAATTTAACG  <  CP009273/4300798‑4300717

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.