New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 4427589	125 (3.250)	12 (0.330)	8/296	NT	11.1%	coding (66/939 nt)	ytfI	uncharacterized protein
	?	CP009273	= 4427843	75 (2.070)					coding (320/939 nt)	ytfI	uncharacterized protein

GTATTTCCTGATTCTGCCATCCTGATTTCTCCCAACCTAAAAAGTTATAAATAAAAAGAGATTGTATTTAAAGTGCAAAAATTCAATTGCTAATAAGTTACATTTTAATAATGAGCGTTTTTTGATAGTTTACTTCTATAGTGAGATATTTAATGGCGACATAAAGTAACCAAATAAAATAAGGTTGTCATATGTTACCCAGGATCAGACACAATAATTTTATTGGTGCGGTGGAGTTATTTGTAAAGTCTTCGTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/4427333‑4427589 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttcgtatTCAAATCCACTACCTCGCAATGTCATTGTATATTCGGCACCGTTATCTTTAAGGCTGAAACTGATAAGAAACTTATCCATGGCGTGAACAGTTTCATTTTTTGATGAAAGCACCTGATAACCACTTTTATCAATCTGAGTTGCGCAACGAAAGAACTCCCTCAAAGTTAACAGGCTATCATAATTCGAAATCCAATCTTTTTTCTTAAATGCATGATGGATGTTGTTAAAAAAATTGTTTGAATGTGTTTTTGTATACGAAGACTTTACA  <  CP009273/4427843‑4427574                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GTATTTCCTGATTCTGCCATCCTGATTTCTCCCAACCTAAAAAGTTATAAATAAAAAGAGATTGTATTTAAAGTGCAAAAATTCAATTGCTAATAAGTTACATTTTAATAATGAGCGTTTTTTGATAGTTTACTTCTATAGTGAGATATTTAATGGCGACATAAAGTAACCAAATAAAATAAGGTTGTCATATGTTACCCAGGATCAGACACAATAATTTTATTGGTGCGGTGGAGTTATTTGTAAAGTCTT                                                                                                                                                                                                                                                                                     >  2:579814/1‑252     TTCCTGATTCTGCCATCCTGATTTCTCCCAACCTAAAAAGTTATAAATAAAAAGAGATTGTATTTAAAGTGCAAAAATTCAATTGCTAATAAGTTACATTTTAATAATGAGCGTTTTTTGATAGTTTACTTCTATAGTGAGATATTTAATGGCGACATAAAGTAACCAAATAAAATAAGGTTGTCATATGTTACCCAGGATCAGACACAATAATTTTATTGGTGCGGTGGAGTTATTTGTAAAGTCTTCGTA                                                                                                                                                                                                                                                                                 <  1:579823/252‑1                                                                                                                                                AGATATTTAATGGCGACATAAAGTAACCAAATAAAATAAGGTTGTCATATGTTACCCAGGATCAGACACAATAATTTTATTGGTGCGGTGGAGTTATTTGTAAAGTC                                                                                                                                                                                                                                                                                       >  1:6614/1‑107                                                                                                                                                    ATTTAATGGCGACATAAAGTAACCAAATAAAATAAGGTTGTCATATGTTACCCAGGATCAGACACAATAATTTTATTGGTGCGGTGGAGTTATTTGTAAAGTCTTCG                                                                                                                                                                                                                                                                                   <  2:6614/107‑1                                                                                                                                                          TGGCGACATAAAGTAACCAAATAAAATAAGGTTGTCATATGTTACCCAGGATCAGACACAATAATTTTATTGGTGCGGTGGAGTTATTTGTAAAGTC                                                                                                                                                                                                                                                                                       >  2:265471/1‑97                                                                                                                                                              GACATAAAGTAACCAAATAAAATAAGGTTGTCATATGTTACCCAGGATCAGACACAATAATTTTATTGGTGCGGTGGAGTTATTTGTAAAGTCTTCG                                                                                                                                                                                                                                                                                   <  1:265476/97‑1                                                                                                                                                                CATAAAGTAACCAAATAAAATAAGGTTGTCATATGTTACCCAGGATCAGACACAATAATTTTATTGGTGCGGTGGAGTTATTTGTAAAGTCT                                                                                                                                                                                                                                                                                      <  2:271020/92‑1                                                                                                                                                                                             CATATGTTACCCAGGATCAGACACAATAATTTTATTGGTGCGGTGGAGTTATTTGTAAAGTCTTCGTATACAAAAACACTACCTCGCAATGTCATTGTATATTCGGCACCGTTATCTTTAAGGCTGAAACTGATAAGAAACTTATCCATGGCGTGAACAGTTTCATTTTTTGATGAAAGCACCTGATAACCACTTTTATCAATCTGAGTTGCGCAACGAAAGAACTCCCTCAAAGTTAACAGGCTATCATAATTCGAAATCCAATCTTTTTTCTT                                                                  >  1:166278/1‑275                                                                                                                                                                                             CATATGTTACACAGGATCAGACACAATAATTTTATTGGTGCGGTGGAGTTATTTGTAAAGTCTTCGTATACAAAAACACTACCTCGCAATGTCATTGTATATTCGGCACCGTTATCTTTAAGGCTGAAACTGATAAGAAACTTATCCATGGCGTGAACAGTTTCATTTTTTGATGAAAGCACCTGATAACCACTTTTATCAATCTGAGTTGCGCAACGAAAGAACTCCCTCAAAGTTAACAGGCTATCATAATTCGAAATCCAATCTTTTTTCTT                                                                  >  1:704455/1‑275                                                                                                                                                                                              ATATGTTACCCAGGATCAGACACAATAATTTTATTGGTGCGGTGGAGTTATTTGTAAAGTCTTCGTATTCAAATCCACTACCTCGCAATGTCATTGTATATTCGGCACCGTTATCTTTAAGGCTGAAACTGATAAGAAACTTATCCATGGCGTGA                                                                                                                                                                                         >  2:92610/1‑155                                                                                                                                                                                              ATATGTTACCCAGGATCAGACACAATAATTTTATTGGTGCGGTGGAGTTATTTGTAAAGTCTTCGTATTCAAATCCACTACCTCGCAATGTCATTGTATATTCGGCAC                                                                                                                                                                                                                                        >  1:147437/1‑108                                                                                                                                                                                              ATATGTTACCCAGGATCAGACACAATAATTTTATTGGTGCGGTGGAGTTATTTGTAAAGTCTTCGTATTCAAATCCACTACCTCGCAATGTCAT                                                                                                                                                                                                                                                      >  2:110545/1‑94                                                                                                                                                                                                 TGTTACCCAGGATCAGACACAATAATTTGATTGGTGCGGTGGAGTTATTTGTAAAGTCTTCGTA                                                                                                                                                                                                                                                                                 >  1:511456/1‑64                                                                                                                                                                                                  GTTACCCAGGATCAGACACAATAATTTTATTGGTGCGGTGGAGTTATTTGTAAAGTCTTCGTATTCAAATCCACTACCTCGCAATGTCATTGTATATTCGGCACCGTTATCTTTAAGGCTGAAACTGATAAGAAACTTATCCATGGCGTGAACAG                                                                                                                                                                                     <  1:92611/155‑1                                                                                                                                                                                                  GTTACCCAGGATCAGACACAATAATTTTATTGGTGCGGTGGAGTTATTTGTAAAGTCTTCGTATTCAAATCCACTACCTCGCAATGTCATTGTATATTCGGCACCGTT                                                                                                                                                                                                                                    <  2:147436/108‑1                                                                                                                                                                                                  GTTACCCAGGATCAGACACAATAATTTTATTGGTGCGGTGGAGTTATTTGTAAAGTCTTCGTATTCAAATCCACTACCTCGCAATGTCATTGTA                                                                                                                                                                                                                                                  <  1:110546/94‑1                                                                                                                                                                                                   TTACCCAGGATCAGACACAATAATTTTATTGGTGCGGTGGAGTTATTTGTAAAGTCTTCGTATACAAAAACACTACCTCGCAATGTCATTGTATATTCGGCACCGTTATCTTTAAGGCTGAAACTGATAAGAAACTTATCCATGGCGTGAACAGTTTCATTTTTTGATGAAAGCACCTGATAACCACTTTTATCAATCTGAGTTGCGCAACGAAAGAACTCCCTCAAAGTTAACAGGCTATCATAATTCGAAATCCAATCTTTTTTCTTAAATGC                                                            <  2:166275/275‑1                                                                                                                                                                                                   TTACCCAGGATCAGACACAATAATTTTATTGGTGCGGTGGAGTTATTTGTAAAGTCTTCGTATACAAAAACACTACCTCGCAATGTCATTGTATATTCGGCACCGTTATCTTTAAGGCTGAAACTGATAAGAAACTTATCCATGGCGTGAACAGTTTCATTTTTTGATGAAAGCACCTGATAACCACTTTTATCAATCTGAGTTGCGCAACGAAAGAACTCCCTCAAAGTTAACAGGCTATCATAATTCGAAATCCAATCTTTTTTCTTAAATGC                                                            <  2:704445/275‑1                                                                                                                                                                                                           GATCAGACACAATAATTTTATTGGTGCGGTGGAGTTATTTGTAAAGT                                                                                                                                                                                                                                                                                        >  1:456294/1‑47                                                                                                                                                                                                               AGACACAATAATTTTATTGGTGCGGTGGAGTTATTTGTAAAGTCTTC                                                                                                                                                                                                                                                                                    <  2:456287/47‑1                                                                                                                                                                                                                     AATAATTTTATTGGTGCGGTGGAGTTATTTGTAAAGTC                                                                                                                                                                                                                                                                                       >  2:327354/1‑38                                                                                                                                                                                                                         ATTTTATTGGTGCGGTGGAGTTATTTGTAAAGTCTTCG                                                                                                                                                                                                                                                                                   <  1:327360/38‑1                                                                                                                                                                                                                          ttctagTGGNGCGGTGGAGTTATTTGTAAAGTCTTCGTATACAAATCAACTACCTCGCAATGTCATTGTATATTCGGCACCGTTATCTTTAAGGCTGAAAATGATAAGAAACTTATACATGGCGTGAACAGTTTCATGTGTTGATGAAAGCACCTGATAACCACTTTTATCAATCTGAGTTGCGCAACGAAAGAACTCCCTCAAAGTTAACAGGCTATCATAATTCGAAATCCAATCTTTTTGCTTAAATGCATGATGGATGTTGTTAAAAAAAT                                     <  2:270840/269‑1                                                                                                                                                                                                                             TATTGGTGCGGTGGAGTTATTTGTAAAGTCTTCGTATACAAATCCACTACCTCGCAATGTCATTGTATATTCGGCACCGTTATCTTTAAGGCTGAAACTGATAAGAAACTTATCCATGGCGTGCACAGTTTCATTTTTTGCTGAAAGCACCTGATACCCACTTTTATCAATCTGAGTTGCGCAACGAACGAACTCCCTCAAAGTTAACAGGCTATCATCATTCGAAATCCAATCTTTTTTCTTAAATGCATGATGGATTTTGTTAAAA                                         >  1:270845/1‑268                                                                                                                                                                                                                                                            TCGTATTCAAATCCACTACCTCGCAATGTCATTGTATATTCGGCACCGTTATCTTTAAGGCTGAAACTGATAAGAAACTTATCCATGGCGTGAA                                                                                                                                                                                        <  2:339437/94‑1                                                                                                                                                                                                                                                            TCGTATTCAAATCCACTACCTCGCAATGTCATTGTATATTCGGCACCGTTATCTTTAAGGCTGAAACTGATAA                                                                                                                                                                                                             <  1:495336/73‑1                                                                                                                                                                                                                                                             CGTATTCAAATCCACTACCTCGCAATGTCATTGTATATTCGGCACCGTTATCTTTAAGGCTGAAACTGATAAGAAACTTATCCATGGCGTGAACAGTTTCATTTTTTGATGAAAGCACCTGATAACCACTTTTATCAATCTGAGTTGCGCAATGAAAGAACTCCCTCAAAGTTAACAGGCTATCATAATTCGAAATCCAATCTTTTTTCTTAAATGCATGATGGATGTTGTTAAAAAAATTGTTTGAATGTGTTTTTGTATACTAAGACTTTACA  >  1:624312/1‑275                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GTATTTCCTGATTCTGCCATCCTGATTTCTCCCAACCTAAAAAGTTATAAATAAAAAGAGATTGTATTTAAAGTGCAAAAATTCAATTGCTAATAAGTTACATTTTAATAATGAGCGTTTTTTGATAGTTTACTTCTATAGTGAGATATTTAATGGCGACATAAAGTAACCAAATAAAATAAGGTTGTCATATGTTACCCAGGATCAGACACAATAATTTTATTGGTGCGGTGGAGTTATTTGTAAAGTCTTCGTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/4427333‑4427589 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttcgtatTCAAATCCACTACCTCGCAATGTCATTGTATATTCGGCACCGTTATCTTTAAGGCTGAAACTGATAAGAAACTTATCCATGGCGTGAACAGTTTCATTTTTTGATGAAAGCACCTGATAACCACTTTTATCAATCTGAGTTGCGCAACGAAAGAACTCCCTCAAAGTTAACAGGCTATCATAATTCGAAATCCAATCTTTTTTCTTAAATGCATGATGGATGTTGTTAAAAAAATTGTTTGAATGTGTTTTTGTATACGAAGACTTTACA  <  CP009273/4427843‑4427574

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.