| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4433728 = | 45 (1.170) | 8 (0.220) | 5/296 | NT | 17.5% | coding (1530/1734 nt) | tamA | translocation and assembly module for autotransporter export, outer membrane subunit |
| ? | CP009273 | 4434929 = | 33 (0.910) | coding (1001/3780 nt) | tamB | translocation and assembly module for autotransporter export, inner membrane subunit | |||||
CCACGCCGAGGCTGATTTTTTTCCATAAACTCATAATTCTGGCCCCAGACCGATGTAAAACTGTAACCCGTGTTCGTCTTTATCCGCGACCGGTACGGCAAAATCGAGTTTGATTGGCCCGACCGGCGATTCCCAGCGCACGCCGACCCCGGTACCGGTTTTAAAGTCGCTGCGGCGAATATCGCTTACCGCTTCGCCACTATCGACAAACACCGCGCCCCACCATTTTCCGGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/4433962‑4433728‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttccggtcCGGTGGATATGGATTTACGCGCCCAGACGCGACTGGCGGAAGCCGGATTGCCGCTCAACGTGGAAGTGAACAGCAAACAGCTTTACTGGCCGTTCACTGGTGAGAAGCAGTATCAGGCGGATGATCTGAAACTGAAACTTACCGGCAAAATGACCGATTACA > CP009273/4434929‑4435090 CCACGCCGAGGCTGATTTTTTTCCATAAACTCATAATTCTGGCCCCAGACCGATGTAAAACTGTAACCCGTGTTCGTCTTTATCCGCGACCGGTACGGCAAAATCGAGTTTGATTGGCCCGACCGGCGATTCCCAGCGCACGCCGACCCCGGTACCGGTTTTAAAGTCGCTGCGGCGAATATCGCTTACCGCTTCGCCACTATCTACAAACACCCCGCCCCACCATTTTCCGGCCCGGCGGACAGTGATTGACGCGCCCTGCCCCGACTGtgcg > 2:244699/1‑270 TTTTTTTCCATAACCTCATAATTCTGGCCCCAGACCGATGTAAAACTGTAACCCGTGTTCGTCTTTATCCGCGACCGGTACTGCAAAATCGAGTTTGATTGGCCCGACCGGCGATTCCCAGCGCACGCCGACCCCGGTACCGGTTTTAAAGTCGCTGCGGCGAATATCGCTTACCGCTTCGCCACTATCGACAAACACCGCGCCCCACCATTTTCCGGTCCGGTGGATATGGATTTACGCGCCCAGACGCGACTGGCGGAAGCCGGATTGCCGCT < 1:259278/275‑1 TTTTTTTCCATAAACTCATAATTCTGGCCCCAGACCGATGTAAAACTGTAACCCGTGTTCGTCTTTATCCGCGACCGGTACGGCAAAATCGAGTTTGATTGGCCCGACCGGCGATTCCCAGCGCACGCCGACCCCGGTACCGGTTTTAAAGTCGCTGCGGCGAATATCGCTTACCGCTTCGCCACTATCGACAAACACCGCGCCCCACCATTTTCCGGTCCGGTGGATATGGATTTACGCGCCCAGACGCGACTGGCGGAAGCCGGATTGCCGCT < 1:244704/275‑1 CGACCGGTACGGCAAATTCGCGTTTGATCGGCCCGACCGGCGATGCCCAGCGCACGCCGACCCCGGTACCGGTTTTAAAGTCGCTGCGGCGAATATCGCTTACCGCTTCGCCACTATCGACAAACACCGCGCCCCACCATTTT > 1:513474/1‑143 CGGTACGGCAAAATCGAGTTTGATTGGCCCGACCGGCGATTCCCAGCGCACGCCGACCCCGGTACCGGTTTTAAAGTCGCTGCGGCGAATATCGCTTACCGCTTCGCCACTATCGACAAACACCGCGCCCCACCATTTTCCGG < 2:513467/143‑1 CGATTCCCAGCGCACGCCGACCCCGGTACCGGTTTTAAAGTCGCTGCGGCGAATATCGCTTACCGCTTCGCCACTATCGACAAACACCGCGCCCCACCATTTTCCGGT > 2:486723/1‑108 GCTGCGGCGAATATCGCTTACCGCTTCGCCACTATCGACAAACACCGCGCCCCACCATTTTCCGGTCCGGTGGATATGGATTTACGCGCCCAGACGCGACTGGCGGAAGCCGGATTGCCGCTCAACGTGGAAGTGAACAGCAAACAGCTTTACTGGCCGT > 2:556293/1‑160 GCTGCGGCGAATATCGCTTACCGCTTCGCCACTATCGACAAACACCGCGCCCCACCATTTTCCGGTCCGGTGGATATGGATTTACGCGCCCAGACGCGACTGGCGGAAGCCGGATTGC > 2:307384/1‑118 aGGCGAATATCGCTTACCGCTTCGCCACTATCGACAAACACCGCGCCCCACCATTTTCCGGTCCGGTGGATATGGATTTACGCGCCCAGACGCGACTGGCGGAAGCCGGATTGCCGCTCAACGTGGAAGTGAACAGCAAACAGCTTTACTGGCCGTTCAC < 1:556302/159‑1 CGGCGAATATCGCTTACCGCTTCGCCACTATCGACAAACACCGCGCCCCACCATTTTCCGGTCCGGTGGATATGGATTTACGCGCCCAGACGCGACTGGCGGAAGCCGGATTGCCGCT < 1:307390/118‑1 CGGCGAATATCGCTTACCGCTTCGCCACTATCGACAAACACCGCGCCCCACCATTTTCCGGTCCGGTGGATATGGATTTACGCGCCCAGACGCGACTGGCGGAAGCCGGATTGCCG < 1:245056/116‑1 TCCGGTCCGGTGGATATGGATTTACGCGCCCAGACGCGACTGGCGGAAGCCGGATTGCCGCTCAACGTGGAAGTGAACAGCAAACAGCTTTACTGGCCGTTCACTGGTGAGAAGCAGTATCAGGCGGATGATCTGAAACTGAAACTTACCGGCAAAATGACCGAT > 1:599430/1‑165 TCCGGTCCGGTGGATATGGATTTACGCGCCCAGACGCGACTGGCGGAAGCCGGATTGCCGCTCAACGTGGAAGTGAACAGCAAACAGCTTTA > 2:172681/1‑92 GTCCGGTGGATATGGATTTACGCGCCCAGACGCGACTGGCGGAAGCCGGATTGCCGCTCAACGTGGAAGTGAACAGCAAACAGCTTTACTGGCCGTTCACTGGTGAGAAGCAGTATCAGGCGGATGATCTGAAACTGAAACTTACCGGCAAAATGACCGATTACA < 2:599421/165‑1 GTCCGGTGGATATGGATTTACGCGCCCAGACGCGACTGGCGGAAGCCGGATTGCCGCTCAACGTGGAAGTGAACAGCAAACAGCTTTACTGG < 1:172684/92‑1 TCCGGTGGATATGGATTTACGCGCCCAGACGCGACTGGCGGAAGCCGGATTGCCGCTCAACGTGGAAG > 2:45957/1‑68 CCACGCCGAGGCTGATTTTTTTCCATAAACTCATAATTCTGGCCCCAGACCGATGTAAAACTGTAACCCGTGTTCGTCTTTATCCGCGACCGGTACGGCAAAATCGAGTTTGATTGGCCCGACCGGCGATTCCCAGCGCACGCCGACCCCGGTACCGGTTTTAAAGTCGCTGCGGCGAATATCGCTTACCGCTTCGCCACTATCGACAAACACCGCGCCCCACCATTTTCCGGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/4433962‑4433728‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttccggtcCGGTGGATATGGATTTACGCGCCCAGACGCGACTGGCGGAAGCCGGATTGCCGCTCAACGTGGAAGTGAACAGCAAACAGCTTTACTGGCCGTTCACTGGTGAGAAGCAGTATCAGGCGGATGATCTGAAACTGAAACTTACCGGCAAAATGACCGATTACA > CP009273/4434929‑4435090 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |