| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4455951 | 37 (0.960) | 13 (0.350) | 5/306 | NT | 28.2% | coding (47/1422 nt) | treB | fused trehalose(maltose)‑specific PTS enzyme: IIB component/IIC component |
| ? | CP009273 | = 4456022 | 30 (0.800) | intergenic (‑25/+94) | treB/treR | fused trehalose(maltose)‑specific PTS enzyme: IIB component/IIC component/trehalose 6‑phosphate‑inducible trehalose regulon transcriptional repressor | |||||
ACCTGCGCCTGTCCGGTTGACGCAATCAGTGCTTGATAGTAATCACCCACGTTGGTGCCAATCACCACCTGAAATTGCCCGGCATTGGTGAAACAGCCTTTCACCATAGGGAGTTGCTCAATTTCTTTCGGTCTGGCATTGGCCGGTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4455735‑4455951‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accaAAAATGTCATCTGCCATGGGGCTTTATGATGAGCAAAATAAACCAAACGGATATCGATCGGTTGATTGAACTGGTCGGCGGGCGCGGCAATATTGCGACGGTGAGCCACTGTATTACTCGCCTACGCTTTGTCCTCAACCAACCGGCCAATGCCAGACCGAAAGAAATTGAGCAACTCCCTATGGTGAAAGGCTGT < CP009273/4456022‑4455827 ACCTGTGCCTGTCCGGTTGACGCAATCAGTGCTTGTTAGTAATCACCCACGTTGGTGCCAATCACCACCCGAAATTGCCAGACAGTGGTGAAACAGCCTTTCACCATAGGGAGTAGCTCAATTTCTTTCGGTCTGGCATTGGCAGGTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATATTC‑TG‑CAGCCAACCAAAAATGTCATCTGCCATGGGGCTTTATGATGAGAAAAATAAACCAAACGGATATCGATCG < 1:128344/275‑1ACCTGCGCCTGTCCGGTTGACGCAATCAGTGCTTGATAGTAATCACCCACGTTGGTGCCAATCACCACCTGAAATTGCACGGCATTGGTGAAACAGCCTTTCACCATAGGGAGTTGCTCAATTTCTTTCGGTCTGGCATTGGCCGGTTGGTTGAGGACAAAGCGTAGGCGCGTAATACAGTGGCTCAACGTCGCAGTATTGCCGCGCCCGCCGACCAAACATGTCCTATGCCATGGGGCATTATGATGAGCAAACTAAACCAAACGAATATCG > 1:714052/1‑273 CTGCTCCTGTCCGGTTTACGCAATCAGTGCTTGATAGTAATCACCCACGTTGGTGCCAATCACCACCTGAAATTGCCCGGCATTGGTGAAACAGCCTTTCACCATAGGGAGTTGCTCAATTTCTTTCGGTCTGGCATTGGCCGGTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAAAAATGTCATCTGCCATGGGGCTTTATGATGAGCAAAATAAACCAAACGGATATCGATCG < 1:708598/275‑1 gGCGCCGGGCCGGGTGACGGAAGAAGTGCGTGTTAGGAATCGCCCACGTTGGTGACAAGCACCACCGGAAATTGCCCGGCATTGGTGAAACAGACTGGCACCATAGGGAGTTGCGCAATGTCTTTCGGTCTGGCATTGGCCGGTTGGTTGAGGACAAAGCGTAGGTGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAAAAATGTCATCTGCCATGGGGCTTTATGATGAGCAAAATAAACCAAACGGATATCGATCG < 2:714042/273‑1 ACAGCCTTTCACCATAGGGAGTTGCTCAATTTCTTTCGGTCTGGCATTGGCCGGTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAAAAATGTCATCTGCCATGGGGCTTTATGATGAGCAAAATAAACCAAACGGATATCG > 2:254708/1‑181 CCTTTCACCATAGGGAGTTGCTCAATTTCTTTCGGTCTGGCATTGGCCGGTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAAAAATGTCATCTGCCATGGGGCTTTATGATGAGCAAAATAAACCAAACGGATATCGATCG < 1:254713/181‑1 TGCTCAATTTCTTTCGGTCTGGCATTGGCCGGTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAAAAATGTCATCTGCCATGGTGCTTTATGATGAGCAAAATAAACCAAACGGATATCG > 2:515990/1‑159 TGCTCAATTTCTTTCGGTCTGGCATTGGCCGGTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAAAAATGTCATCTGCCATGGGGCTTTATGATGAGCAAAATAAACTCAACGGATATCn > 1:664125/1‑158 TGCTCAATTTCTTTCGGTCTGGCATTGGACGGTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAAAAATGTCATCTGCCATGGGGCTTTATGATGAGCAAAATAAACCAAACGGATATCG > 1:512279/1‑159 CAATTTCTTTCGGTCTGGCATTGGCCGGTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAAAAATGTCATCTGCCATGGGGCTTTATGATGAGCAAAATAAACCAAACGGATATCGATCG < 1:515997/159‑1 CAATTTCTTTCGGTCTGGCATTGGCCGGTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGA < 2:211215/96‑1 CAATTGCTGTCGGTCTGGCATTGGCCGGTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAAAAATGTCATCTGCCATGGGGCTTTATGATGAGCAAAATAAACCAAACGGATATCGATCG < 2:512272/159‑1 GTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCA < 2:58470/72‑1 GCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAAAAATGTCATCTGCCATGGGGCTTTATGATGAGCAAAATAAACCAAACGGATATCG > 2:12737/1‑91 ACCGTCGCAATATTGCCGCGCCCGCCGACCAAAAATGTCATCTGCCATGGGGCTTTATGATGAGCAAAATAAACCAAACGGATATCGATCG < 1:12737/91‑1 CCAAAAATGTCATCTGCCATGGGGCTTTATGATGAGCAAAATAAACCAAACGGATATCGATCGGTTGATTGAACTGGTCGGCGGGCGCGGCAATATTGCGACGGTGAGCCACTGTATTACTCGCCTACGCTTTGTCCTCAACCAACCGGCCAATGCCAGACCGAAAGAAATTGAGCAACTCCCTATGGTGAAAGGCTGT < 2:674578/199‑1 CCAAAAATGTCATCTGCCATGGGGCTTTATGATGAGCAAAATAAACCAAACGGATATCGATCGGTTGATTGAACTGGTCGGCGGGCGCGGCAATATTGCGACGGTGAGCCACTGTATTACTCGCCTACGCTTTGTCCTCAACCAACCGGCCAATGCCAGACCGAAAGAAATTGAGCAACTCCCT < 2:14424/184‑1 CCAAAAATGTCATCTGCCATGGGGCTTTATGATGAGCAAAATAAACCAAACGGATATCGATCGGTTGATTGAACTGGTCGGCGGGCGCGGCAATATTGCGACGGTG < 1:236011/106‑1 ACCTGCGCCTGTCCGGTTGACGCAATCAGTGCTTGATAGTAATCACCCACGTTGGTGCCAATCACCACCTGAAATTGCCCGGCATTGGTGAAACAGCCTTTCACCATAGGGAGTTGCTCAATTTCTTTCGGTCTGGCATTGGCCGGTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4455735‑4455951‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accaAAAATGTCATCTGCCATGGGGCTTTATGATGAGCAAAATAAACCAAACGGATATCGATCGGTTGATTGAACTGGTCGGCGGGCGCGGCAATATTGCGACGGTGAGCCACTGTATTACTCGCCTACGCTTTGTCCTCAACCAACCGGCCAATGCCAGACCGAAAGAAATTGAGCAACTCCCTATGGTGAAAGGCTGT < CP009273/4456022‑4455827 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |