New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 4455951	37 (0.960)	13 (0.350)	5/306	NT	28.2%	coding (47/1422 nt)	treB	fused trehalose(maltose)‑specific PTS enzyme: IIB component/IIC component
	?	CP009273	= 4456022	30 (0.800)					intergenic (‑25/+94)	treB/treR	fused trehalose(maltose)‑specific PTS enzyme: IIB component/IIC component/trehalose 6‑phosphate‑inducible trehalose regulon transcriptional repressor

GACGCAATCAGTGCTTGATAGTAATCACCCACGTTGGTGCCAATCACCACCTGAAATTGCCCGGCATTGGTGAAACAGCCTTTCACCATAGGGAGTTGCTCAATTTCTTTCGGTCTGGCATTGGCCGGTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGTTCAATCAACCGATCGATATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTTTGGTTGGCTGCAGAATATATTGCGCGGAAAAATTTAAAAACGGGAACGTTCCCGAAACGCAGCGAAGATCACAATTTATCGTTCAGGAAACGATCAGGACAGGGTGGCGGGGATGATGATTTGTTGCGGTTCGCTGCGCCCGGTTACCTGCGCGATCAACTGGCAAGCCGCCTGGCGTCCAGCTTCGGCGTAACCGGGATCTACGGTTACGATCTCCGGATGGAGGAATTTCATTAACGGCGTATTACCGACGCTCGCCAGTTGCAAGG  >  CP009273/4455753‑4456291                                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                                              gACGCTTTCAGTGCTTGATAGTAATCACCCCCGTTGGTGCCAATCACCACCTGATATTGCCCGGCATTGGTTAAACAGCCTTTCACCATAGGGAGTTGCTCAATTTCTTTCGGTCTGGCATTGGCCGGTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGTTCAATCAACCGATCGATATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTttggtt                                                                                                                                                                                                                                                                          <  1:164853/275‑1 (MQ=255)     caaacatcgattGATAGAAATCACCCACGTTGGTGCCAATACACACCTGAACTTGCCCGGCATTGGTGAAACAGCCTTTCACCATAGGGAGTTGCTCAATTTCTTTCGGTCTGGCATTGGCCGGTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGTTCAATCAACCGATCGATATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTTTGGTTGGCt                                                                                                                                                                                                                                                                      <  2:79445/265‑1 (MQ=255)                                                            cccGGCATTGGTGAAACAGCCTTTCACCATAGGGAGTTGCTCAATTTCTTTCGGTCTGGCATTGGCCGGTTGGTTGCGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCCGTTCAATCAACCGACCGATATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTTTGGTTGGCTGCAGAATATATTGCGCGGAAAAATTTAAAAACGAGAACGATCACGAAACGCAACg                                                                                                                                                                                                               >  1:432888/1‑275 (MQ=255)                                                            cccGGCATTGGTGAAACAGCCTTTCACCATAGGGAGTTGCTCAATTTCTTTCGGTCTGGCATTGGCCGGTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGTTCAATCAACCGATCGATATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTttggtt                                                                                                                                                                                                                                                                          >  2:563353/1‑216 (MQ=255)                                                            ccacgcaagggagAAACAGCCTGGCACGACATCGAGGTGCTCAATTTGTTGCTGACAGGAATTGGCCGGATGGTGGAAGACAAAGCGTGGGCGAGCAATGCAGGGGAGCACCGTCGCAATTTTGTCGCGCACGCCGACCAATTCAATCAACAGAGTGATATCCGTGTGGTTTATTTTTCTCATCATAAAGCCCCATGGCAGATGACATTTTTGGTTGGCTGCAGAATATATTGCGCGGAAAAATTTAAAAACGGGAACGGTCCCGAAACGCAGCg                                                                                                                                                                                                               <  2:254946/263‑1 (MQ=255)                                                                gCATTGGTGAAACAGCCTTTCACCATAGGGAGTTGCTCAATTTCTTTCGGTCTGGCATTGGCCGGTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGTTCAATCAACCGATCGATATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTTTGGTTGGCt                                                                                                                                                                                                                                                                      <  1:563362/216‑1 (MQ=255)                                                                           aCAGCCTTTCACCATAGGGAGTTGCTCAATTTCTTTCGGTCTGGCATTGGCCGGTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGTTCAATCAACCGATCGATATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTTtgg                                                                                                                                                                                                                                                                            <  2:674578‑M2/199‑4 (MQ=255)                                                                               ccTTTCACCATAGGGAGTTGCTCAATTTCTTTCGGTCTGGCATTGGCCGGTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGTTCAATCAACCGATCGATATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTttggttgg                                                                                                                                                                                                                                                                        <  1:674587/199‑1 (MQ=255)                                                                                         cgcggccttccncnNTTTTTTTCGCCCTGGCAGTGGCCTGTTGGTTGAGGACACGGCGTAGGCGAGTAATAACGTGGCTCACCGGCGCATTATTGCCGCGCCCGCCGACCAGTTCAATCGACCGATCTATATACATTTGGTTTATTTTGCTCATCATAAAGCCCCATAGCAGATGACATTTTTGGTTGGCTGCAGAATATAGTGCGCGGAAAAATTTAAAAACGGGAACGTTCCCGAAACGCAGCGAAGATCACAATTTATCGTTCAGGAAACGa                                                                                                                                                                                  <  2:566672/265‑1 (MQ=255)                                                                                          aGGGAGTTGCTCAATTTCTTTCGGTCTGGCATTGGCCGGTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGTTCAATCAACCGATCGATATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTTtgg                                                                                                                                                                                                                                                                            <  2:14424‑M2/184‑4 (MQ=255)                                                                                              aGTTGCTCAATTTCTTTCGGTCTGGCATTGGCCGGTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGTTCAATCAACCGATCGATATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTttggttgg                                                                                                                                                                                                                                                                        <  1:14424/184‑1 (MQ=255)                                                                                                   cTCAATTTCTTTCGGTCTGGCATTGGCCGGTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGTTCAATCAACCGATCGATATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTTTGGTTGGCTGCAGAATATATTGCGCGGAAAAATTTAAAAACGGGAACGTTCCCGAAACACAGCTAAGACCACAATTNATCTTTCATTAAAcaaccaataca                                                                                                                                                                          >  2:476314/1‑263 (MQ=255)                                                                                                     cAATTTCTTTCGGTCTGGCATTGGCCGGTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGTTCAATCAACCGATCGATATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTTTGGTTGGCTGCAGAATATATTGCGCAGAAAAATTTAAAAACGGGAACGTTCCCGAAACGCAGCGAAGATCACAATTTATCGTTCAGGAAACGATCAGGACAGGGt                                                                                                                                                                      >  1:675226/1‑275 (MQ=255)                                                                                                                                 ttggttgAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGTTCAATCAACCGATCGATATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTTTGGTTGGCTGCAGAATATATTGCGCGGAAAAATTTAAAAACGGGAACGTTCCCGAAACGCAGCGAAGATCACAATTTATCGTTCa                                                                                                                                                                                          >  2:496534/1‑227 (MQ=255)                                                                                                                                     ttgAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGTTCAATCAACCGATCGATATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTTTGGTTGGCTGCAGAATATATTGCGCGGAAAAATTTAAAAACGGGAACGTTCCCGAAACGCAGCGAAGATCACAATTTATCGTTCAGGaa                                                                                                                                                                                      <  1:496541/227‑1 (MQ=255)                                                                                                                                               aGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGTTCACTCCACCGACCGATATCCTTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCCGATGCCATTTttggtt                                                                                                                                                                                                                                                                          >  2:536829/1‑133 (MQ=255)                                                                                                                                                   tAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGTTCAATCAACCGATCGATATCCGTTTGGTTTATTTTGCTCATCATAAAGCACCATGGCAGATTACATTTTTGGTTGGCt                                                                                                                                                                                                                                                                      <  1:536837/133‑1 (MQ=255)                                                                                                                                                              tACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGTTCACTCAACCGATCGATATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTttggtt                                                                                                                                                                                                                                                                          >  1:684233/1‑118 (MQ=255)                                                                                                                                                                  gTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGTTCAATCAACCGATCGATATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTTTGGTTGGCt                                                                                                                                                                                                                                                                      <  2:684224/118‑1 (MQ=255)                                                                                                                                                                   tGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGTTCAATCAACCGATCGATCTCCGTTTGGTATATTTTGCTCATCATAAAACCCCATGGCAGATGACATTTCTGGTTGGCTGCAGAATATATTGCGCGGAAACATTTAAAAACGGGAACGTTCCCTAAACGCAGCTGAGAACCACATTTAACGTTCAGGAAACGATCAGGACAGGGGGGCGGGGCTGATGATTTGGTGAGGTTCGCTGCGCCCGGTTACCTGCGCGATCCCCTGGGaa                                                                                                         >  2:714892/1‑274 (MQ=255)                                                                                                                                                                   tGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGTTCAATCAACCGATCGATATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTTTGGTTGGCTGCAGAATATATTGCGCGGAAAAATTTAAAAACGGGAACGTTCCCGAAACGCAGCGAAGATCACAATTTATCGTTCAGGCAACGATCAGGACAGGGTGGCGGGGATGATGATTTGTTGCGGTTCGCTGCGCCCGGTTACCTGCGCGATCAACTGGCAAg                                                                                                        >  1:704088/1‑275 (MQ=255)                                                                                                                                                                        caacGTCGCAATATTGCCGCGCCCGCCGACCAGTTCAATCAACCGATCGATATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCACGGCAGATGACATTGTTGGTTGGCTGCAGAATTTATTGCGCGGAAAAATTTAAAAACGGGAACGTTCCCGAAAAGCAGCGAACATACAAATTTATCGTTCAAGAAACGATCAGAACAGGGTGGTGGGGAAGATAATTTGTTGCGGTTCGCTGCGTCCGGTTTCCTGCGGGCTCCACTGTCGAtccgc                                                                                                    >  2:154946/4‑274 (MQ=255)                                                                                                                                                                        cACCGTCGCAATATTGCCGCGCCCGCCGACCAGTTCAATCAACCGATCGATATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTTtgg                                                                                                                                                                                                                                                                            <  1:236011‑M2/106‑4 (MQ=255)                                                                                                                                                                            gTCGCAATATTGCCGCGCCCGCCGACCAGTTCAATCAACCGATCGATATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTttggttgg                                                                                                                                                                                                                                                                        <  2:236006/106‑1 (MQ=255)                                                                                                                                                                                     ttGCCGCGCCCGCCGACCAGTTCAATCAACCGATCGATATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTTTGGTTGGCTGCAGAATATATTGCGCGGAAAAATTTAAAAACGGGAACGTTCCCGAAACGCAGCGAAGATCACAATTTATCGTTCAGGAAACGATCAGGACAGGGAGGCGGGGATGATGATTTGTTGCGGTTCGCTGCGCCCGGTTACCTGCGGGACCACCTGGCAAGCCGCATGGCGTCCaccc                                                                                       >  2:225219/1‑271 (MQ=255)                                                                                                                                                                                                                aaCCGATCGATTTCTGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTTTGGTTGGCTGCAGAAGATATTGCGCGGAAAAAGTTAAAAACGGGAACGTTCCCGAAACGCAGCGAAGATCACAATTTATCGTTCAGGAAACGATCAGGACAGGGTGGCGGGGATGATGATTTGTTGCGGTTCGCTGCGCCCGGTTACCTGCGCGATCAACTGGCAAGCCGCCTGGCGTCCAGCTTCGGCGTAACCGGGATGTACGGTTACg                                                            <  1:714902/274‑1 (MQ=255)                                                                                                                                                                                                                   cgatcgatATCCGTTTGGTTTATTTTTCTCATCATAAAGCCCCATGGCAGATGACATTTTtggttggctgcagaatatattgcgacggtgagccactgtattactcgcctacgctttgtcctcaaccaacctgccaatgccagaccgaaagaaattgagctactccctatggtgaaaggctgtttcaccactgtctggcaatttcgggtggtgattggcaccaacgtgggtgattactaacaagcactgattgcgtcaaccggacaggcacaggt                                                        <  1:128344‑M2/275‑216 (MQ=255)                                                                                                                                                                                                                   cgatcgatATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTTtggtcggcgggcgcggcaatattgcgacggtgagccactgtattactcgcctacgctttgtcctcaaccaaccggccaatgccagaccgacagcaattg                                                                                                                                                                            <  2:512272‑M2/159‑100 (MQ=255)                                                                                                                                                                                                                   cgatcgatATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTTtggtcggcgggcgcggcaatattgcgacggtgagccactgtattactcgcctacgctttgtcctcaaccaaccggccaatgccagaccgaaagaaattgagcaactccctatggtgaaaggctgtttcaccaatgccgggcaatttcaggtggtgattggcaccaacgtgggtgattactatcaagcactgattgcgtaaaccggacaggagcag                                                        <  1:708598‑M2/275‑216 (MQ=255)                                                                                                                                                                                                                   cgatcgatATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTTtggtcggcgggcgcggcaatattgcgacggtgagccactgtattactcgcctacgctttgtcctcaaccaaccggccaatgccagaccgaaagaaattgagcaactccctatggtgaaagg                                                                                                                                                      <  1:254713‑M2/181‑122 (MQ=255)                                                                                                                                                                                                                   cgatcgatATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTTtggtcggcgggcgcggcaatattgcgacggtgagccactgtattactcgcctacgctttgtcctcaaccaaccggccaatgccagaccgaaagaaattg                                                                                                                                                                            <  1:515997‑M2/159‑100 (MQ=255)                                                                                                                                                                                                                   cgatcgatATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTTtggtcggcgggcgcggcaatattgcgacggtgagccactgtattactcacctacgctttgtcctcaaccaaccggccaatgccagaccgaaagacattgcgcaactccctatggtgccagtctgtttcaccaatgccgggcaatttccggtggtgcttgtcaccaacgtgggcgattcctaacacgcacttcttccgtcacccggcccggcgcc                                                         <  2:714042‑M2/274‑215 (MQ=255)                                                                                                                                                                                                                   cgatcgatATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTTtggtcggcgggcgcggcaatattgcgacggt                                                                                                                                                                                                                                                <  1:12737‑M2/91‑32 (MQ=255)                                                                                                                                                                                                                       ngataTCCGTTGAGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTTtggtcggcgggcgcggcaatattgcgacggtgagccactgtattactcgcctacgctttgtcctcaaccaaccggccaatgccagaccgaaagaaattgagca                                                                                                                                                                        >  1:664125‑M2/2‑56 (MQ=255)                                                                                                                                                                                                                       cgatATTCGTTTGGTTTAGTTTGCTCATCATAATGCCCCATGGCATAGGACATGTTtggtcggcgggcgcggcaatactgcgacgttgagccactgtattacgcgcctacgctttgtcctcaaccaaccggccaatgccagaccgaaagaaattgagcaactccctatggtgaaaggctgtttcaccaatgccgtgcaatttcaggtggtgattggcaccaacgtgggtgattactatcaagcactgattgcgtcaaccggacaggcgcaggt                                                      >  1:714052‑M2/1‑56 (MQ=255)                                                                                                                                                                                                                       cgatATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTTtggtcggcgggcgcggcaatattgcgacggtgagccactgtattactcgcctacgctttgtcctcaaccaaccgtccaatgccagaccgaaagaaattgagca                                                                                                                                                                        >  1:512279‑M2/1‑56 (MQ=255)                                                                                                                                                                                                                       cgatATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTTtggtcggcgggcgcggcaatattgcgacggtgagccactgtattactcgcctacgctttgtcctcaaccaaccggccaatgccagaccgaaagaaattgagcaactccctatggtgaaaggctgt                                                                                                                                                  >  2:254708‑M2/1‑56 (MQ=255)                                                                                                                                                                                                                       cgatATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTTtggtcggcgggcgcggcaatattgcgacggtgagc                                                                                                                                                                                                                                            >  2:12737‑M2/1‑56 (MQ=255)                                                                                                                                                                                                                       cgatATCCGTTTGGTTTATTTTGCTCATCATAAAGCACCATGGCAGATGACATTTTtggtcggcgggcgcggcaatattgcgacggtgagccactgtattactcgcctacgctttgtcctcaaccaaccggccaatgccagaccgaaagaaattgagca                                                                                                                                                                        >  2:515990‑M2/1‑56 (MQ=255)                                                                                                                                                                                                                            tCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTttggtt                                                                                                                                                                                                                                                                          >  1:596015/1‑56 (MQ=255)                                                                                                                                                                                                                               gTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTTTGGTTGGCTGCAGAATATATTGCGCGGAAAAATTTAAAAACGGGAACGTTCCCGAAACGCAGCGAAGATCACAATTTATCGTTCAGGAAACGATCAGGACAGGGTGGCGGGGATGATGATTTGTTGCGGTTCGCTGCGCCCGGGTACCTGCGCGATCAACTGGCAAGCCTCCTGGCGTCCAGCTACGTCGGAACCGGGATNTACGGTTACGATGTCCgttcgtag                                              >  2:476497/1‑266 (MQ=255)                                                                                                                                                                                                                                tttGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGATATTTTTGGTTGGCTg                                                                                                                                                                                                                                                                     >  1:278488/1‑57 (MQ=255)                                                                                                                                                                                                                                tttGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTTTGGTTGGCt                                                                                                                                                                                                                                                                      <  2:596006/56‑1 (MQ=255)                                                                                                                                                                                                                                    gTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGATATTTTTGGTTGGCTGCAGa                                                                                                                                                                                                                                                                 <  2:278483/57‑1 (MQ=255)                                                                                                                                                                                                                                              cTCATCATAAAGCCCCATGGCAGATGACATTTTTGGTTGGCTGCAGAATATATTGCGCGGAAAAATTTAAAAACGGGAACGTTCCCGAAACGCAGCGAAGATCACAATTTATCGTTCAGGAAACGATCAGGACAGGGTGGCGGGGATGATGATTTGTTGCGGTTCGCTGCTCCCGGTTACCTGNGCGATCAANTGGCAAGCCGACTGGCGTCCAGCTTCGGCGTAACCGGGATCTACGGTTACGATCTCCGGATGGAGGAAATTCATTAACGGc                              >  1:483156/1‑274 (MQ=255)                                                                                                                                                                                                                                               tcatcaTAAAGCCCCATGGCAGATGACATTTTTGGTTGGCTGCAGAATATATTGCGCGGAAAAATTTAAAAACGGGAACGTTCCCGAAACGCAGCGAAGATCACAATTTATCGTTCAGGAAACGATCAGGACAGGGTGGCGGGGATGATGATTTGTTGCGGTTCGCTGCGCCCGGTTACCTGCGCGATCAACTGGCAAGCCGCCTGGCGTCCAGCTTCGGCGTAACCGGGATCTACGGTTACGATCTCCGGATGGAGGAATTTCATTAACGGc                              >  2:169185/1‑273 (MQ=255)                                                                                                                                                                                                                                                        aGCCCCATGGCAGATGACATTTTTGGTTGGCTGCAGAATATATTGCGCGGAAAAATTTAAAAACGGGAACGTTCCCGAAACGc                                                                                                                                                                                                                   >  2:614671/1‑83 (MQ=255)                                                                                                                                                                                                                                                            ccATGGCAGATGACATTTTTGGTTGGCTGCAGAATATATTGCGCGGAAAAATTTAAAAACGGGAACGTTCCCGAAACGCAGCg                                                                                                                                                                                                               <  1:614680/83‑1 (MQ=255)                                                                                                                                                                                                                                                             cATGGCAGATGACATTTTTGGTTGGCTGCAGAatatat                                                                                                                                                                                                                                                           >  1:349271/1‑38 (MQ=255)                                                                                                                                                                                                                                                             cATGGCAGATGACATTTTTGGTTGGCTGCAGAATATATTGCGCGGAAAAATTTAAAAACGGGAACGTTCCCGAAACGCAGCGaa                                                                                                                                                                                                             >  1:79423/1‑84 (MQ=255)                                                                                                                                                                                                                                                             cATGGCAGATGACATTTTTGGTTGGCTGCAGAATATATTGCGCGGAAAAATTTAAAAACGGGAACGTTCCCGAAACGCAGCGAAGATCACAATTTATCGTTCAGGAAACGATCAGGACAGGGTGGCGGGGATGATGATTTGTTGCGGTTCGCTGCGCCCGGTTACCTGCGCGATCAACTGGCAAGCCGCCTGGCGTCCAGCTTCGGCGTCACCGGGCGCTACGGGTACGATCTCCGGATGGAGGAATTTCATTAACGTCGTGTTACCGACGCCCg              >  2:3759/1‑275 (MQ=255)                                                                                                                                                                                                                                                             cATGGCAGATGACATTTTTGGTTGGCTGCAGAATATATTGCGCGGAAAAATTTAAAAACGGGAACGTTCCCGAAACGCAGCGAAGATCACAATTTATCGTTCAGGAAACGATCAGGACAGGGTGGCGGGGATGATGATTTGTTGCGGTTCGCTGCGCCCGGTTACCTGCGCGATCAACTGGCAAGCCGCCTGGCGTCCAGCTTCGGCGTAAc                                                                             >  2:274285/1‑212 (MQ=255)                                                                                                                                                                                                                                                             cATGGCAGATGACATTTTTGGTTGGCTGCAGAATATATTGCGCGGAAAAATTTAAAAACGGGAACGTTCCCGAAACGCAGCGAAGATCACAATTTATCGTTCAGGAAACGATCAGGACAGGGTGGCGGGGATGATGATTTGTTGCGGTTCGCTGCGCCCGGTTACCTGCGCGATCAACTGGCAAGCCGCCTGGCGTCCAGCTTCGGCGTAACCGGGATCTACGGTTACGATCTCCGGATGGAGGAATTTCATTAACGGCGTATTACAGACGCTCg              >  1:370193/1‑275 (MQ=255)                                                                                                                                                                                                                                                              aTGGTAGATGACATTTTTTGTTGGCTGCAGAATATATTGCGCGGAAAAATTTAAAAACGGGAACGTTCCCGAAACGCAGCGANGATCACAANTTATCGTTCAGGTAACGATCAGGACAGGGTGGCGGGGATGATGATTTGTTGCGGTTCGCTGCGCCCGGTTACCTGCGCGATCAACTGGCAAGCCGCCTGGCGTCCAGCTTCGGCGTAACCGGGATCTACGGTTACGATCTCCGGATGGCGGAATTTCATTAACGGCGTATTACCGACGCTCGc             <  1:476321/275‑1 (MQ=255)                                                                                                                                                                                                                                                              aTGGCAGATTACATTTTTGGTTGGCTGCAGAATATATTGCGCGGAAAAATTTAAAAACGGGAACGTTCCCGAAACGCAGCGAAGATCACAANTTATCGTTCAGGAAACGATCAGGACAGGGTGGCGGGGATGATGATTTGTTGCGGTTCGCTGCGCCCGGTTACCTGCGCGATCAACTGGCAAGCCGCCTGGCGTCCAGCTTCGGCGTAACCGGGATCTACGGTTACGATCTCCGGATGGAGGAATTTCATCAACGGCGTATTACCGACGCTCGc             <  1:496597/275‑1 (MQ=255)                                                                                                                                                                                                                                                               tGGAAGATGATATTTTTGCTTGGCTGCAGAATATATTGCGCGGAAAAATTTAAAAACGGGAACGTTCCCGAAACGCAGCGAAGATCACAATTTATCGGTCAGGAAACGATCAGGACAGGGTGGCGGGGATGATGATTTGTTGCGGTTCGCTGCGCCCGGTTACCTGCGCGATCAACTGGCAAGCCGCCTGGCGTCCAGCTTCGGCGTAACCGGGATCTACGGTTACGATCTCCGGATGGAGGAATTTCATTAACGGCGTATTACCGACGCTCGcc            <  1:154949/275‑1 (MQ=255)                                                                                                                                                                                                                                                                 gCAGATGACATTTTTGGTTGGCTGCAGAATATATTgcg                                                                                                                                                                                                                                                       <  2:349265/38‑1 (MQ=255)                                                                                                                                                                                                                                                                 gCAGATGACATTTTTGGTTGGCTGCAGAATATATTGCGCGGAAAAATTTAAAAACGGGAACGTTCCCGAAACGCAGCGAAGATc                                                                                                                                                                                                         <  2:79422/84‑1 (MQ=255)                                                                                                                                                                                                                                                                 gCAGATGACATTTTTGGTTGGCTGCAGAATATATTGCGCGGAAAAATTTAAAAACGGGAACGTTCCCGAAACGCAGCGAAGATCACAATTTAACGTTCAGGAAACGATCAGGACAGGGTGGCGGGGATGATGATTTGTTGCGGTTCGCTGCGCCCGGTTACCTGCGCGATCAACTGGCAAGCCGCCTGGCGTCCAGCTTCGGCGTAACCggg                                                                         <  1:274290/212‑1 (MQ=255)                                                                                                                                                                                                                                                                          aTTTTTGGTTGGCTGCAGAATATATTGCGCGGAAAAATTTAAAAACGGGAACGTTCCCGAAACGCAGCGAAGATCACAATTTATCGTTCAGGAAACGATCAGGACAGGGTGGCGGGGATGATGATTTGTTGCGGTTCGCTGCGCCCGGTTACCTGCGCGATCAACTGGCAAGCCGCCTGGCGTCCAGCTTCGGCGTAACCGGGATCTCCGGTTACGATCTCCGGCTGGAGGAATTTCATTAACGGCGCATTACCGACGCTCGCCAGTTGCAAgg  >  1:178386/1‑274 (MQ=255)                                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                                              GACGCAATCAGTGCTTGATAGTAATCACCCACGTTGGTGCCAATCACCACCTGAAATTGCCCGGCATTGGTGAAACAGCCTTTCACCATAGGGAGTTGCTCAATTTCTTTCGGTCTGGCATTGGCCGGTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGTTCAATCAACCGATCGATATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTTTGGTTGGCTGCAGAATATATTGCGCGGAAAAATTTAAAAACGGGAACGTTCCCGAAACGCAGCGAAGATCACAATTTATCGTTCAGGAAACGATCAGGACAGGGTGGCGGGGATGATGATTTGTTGCGGTTCGCTGCGCCCGGTTACCTGCGCGATCAACTGGCAAGCCGCCTGGCGTCCAGCTTCGGCGTAACCGGGATCTACGGTTACGATCTCCGGATGGAGGAATTTCATTAACGGCGTATTACCGACGCTCGCCAGTTGCAAGG  >  CP009273/4455753‑4456291

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.