New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 4455951	37 (0.960)	13 (0.350)	5/306	NT	28.2%	coding (47/1422 nt)	treB	fused trehalose(maltose)‑specific PTS enzyme: IIB component/IIC component
	?	CP009273	= 4456022	30 (0.800)					intergenic (‑25/+94)	treB/treR	fused trehalose(maltose)‑specific PTS enzyme: IIB component/IIC component/trehalose 6‑phosphate‑inducible trehalose regulon transcriptional repressor

CTCTTTATCAACCTGCGCCTGTCCGGTTGACGCAATCAGTGCTTGATAGTAATCACCCACGTTGGTGCCAATCACCACCTGAAATTGCCCGGCATTGGTGAAACAGCCTTTCACCATAGGGAGTTGCTCAATTTCTTTCGGTCTGGCATTGGCCGGTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGTTCAATCAACCGATCGATATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTTTGGTTGGCTGCAGAATATATTGCGCGGAAAAATTTAAAAACGGGAACGTTCCCGAAACGCAGCGAAGATCACAATTTATCGTTCAGGAAACGATCAGGACAGGGTGGCGGGGATGATGATTTGTTGCGGTTCGCTGCGCCCGGTTACCTGCGCGATCAACTGGCAAGCCGCCTGGCGTCCAGCT  >  CP009273/4455725‑4456206                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                                ctctTTATCAACCTGCGCCTGTCCGGTTGACGCAATCAGTGCTTGATAGTAATCACCCACGTTGGTGCCAATCACCACCTGAAATTGCCCGGCATTGGTGAAACAGCCTTTCACCATAGGGAGTTGCTCAATTTCTTTCGGTCTGGCATTGGCCGGTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGtt                                                                                                                                                                                                                                                              >  2:589464/1‑230 (MQ=255)     ttATCAACCTGCGCCTGTCCGGTTGACGCAATCAGTGCTTGATAGTAATCACCCACGTTGGTGCCAATCACCACCTGAAATTGCCCGGCATTGGTGAAACAGCCTTTCACCATAGGGAGTTGCTCAATTTCTTTCGGTCTGGCATTGGCCGGTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGTtcaat                                                                                                                                                                                                                                                          <  1:589473/230‑1 (MQ=255)           aCCTGTGCCTGTCCGGTTGACGCAATCAGTGCTTGTTAGTAATCACCCACGTTGGTGCCAATCACCACCCGAAATTGCCAGACAGTGGTGAAACAGCCTTTCACCATAGGGAGTAGCTCAATTTCTTTCGGTCTGGCATTGGCAGGTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATATTC‑TG‑CAGCCAACCAaaaatgtcatctgccatggggctttatgatgagaaaaataaaccaaacggatatcgatcg                                                                                                                                                                                                     <  1:128344‑M1/275‑61 (MQ=255)           aCCTGCGCCTGTCCGGTTGACGCAATCAGTGCTTGATAGTAATCACCCACGTTGGTGCCAATCACCACCTGAAATTGCACGGCATTGGTGAAACAGCCTTTCACCATAGGGAGTTGCTCAATTTCTTTCGGTCTGGCATTGGCCGGTTGGTTGAGGACAAAGCGTAGGCGCGTAATACAGTGGCTCAACGTCGCAGTATTGCCGCGCCCGCCGACCAaacatgtcctatgccatggggcattatgatgagcaaactaaaccaaacgaatatcg                                                                                                                                                                                                         >  1:714052‑M1/1‑217 (MQ=255)             cTGCTCCTGTCCGGTTTACGCAATCAGTGCTTGATAGTAATCACCCACGTTGGTGCCAATCACCACCTGAAATTGCCCGGCATTGGTGAAACAGCCTTTCACCATAGGGAGTTGCTCAATTTCTTTCGGTCTGGCATTGGCCGGTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAaaaatgtcatctgccatggggctttatgatgagcaaaataaaccaaacggatatcgatcg                                                                                                                                                                                                     <  1:708598‑M1/275‑61 (MQ=255)              ggcgccGGGCCGGGTGACGGAAGAAGTGCGTGTTAGGAATCGCCCACGTTGGTGACAAGCACCACCGGAAATTGCCCGGCATTGGTGAAACAGACTGGCACCATAGGGAGTTGCGCAATGTCTTTCGGTCTGGCATTGGCCGGTTGGTTGAGGACAAAGCGTAGGTGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAaaaatgtcatctgccatggggctttatgatgagcaaaataaaccaaacggatatcgatcg                                                                                                                                                                                                     <  2:714042‑M1/273‑61 (MQ=255)                cgcCTGTCCGGTTGACGCAATCAGTGCTTGATAGTAATCACCCACGTTGGTGCCAATCACCACCTGAAATTGCCCGGCATTGGTGAAACAGCCTTTCACCATAGGGAGTTGCTCAATTTCTTTCGGTCTGGCATTGGCCGGTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGTTCAATCAACCGATCGATATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGAt                                                                                                                                                                                                  >  1:79446/1‑275 (MQ=255)                      tCCGGTTGACGCAATCAGTGCTTGATAGTAATCACCCACGTTGGTGCCAATCACCACCTGAAATTGCCCGGCATTGGTGAAACAGCCTTTCACCATAGGGAGTTGCTCAATTTCTTTCGGTCTGGCATTGGCCGGTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGTTCAATCAACCGATCGATATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCAt                                                                                                                                                                                                         >  1:29765/1‑262 (MQ=255)                          gTTGACGCAATCAGTGCTTGATAGTAATCACCCACGTTGGTGCCAATCACCACCTGAAATTGCCCGGCAGTGGTGAAACAGCCTTTCACCATAGGGAGTTGCTCAATTTCTTTCGGTCTGGCATTGGACGGTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGTTCAATCAACCGATCGATATCCGTTTGGTTTATTTTGCt                                                                                                                                                                                                                         <  1:283914/242‑1 (MQ=255)                             gACGCTTTCAGTGCTTGATAGTAATCACCCCCGTTGGTGCCAATCACCACCTGATATTGCCCGGCATTGGTTAAACAGCCTTTCACCATAGGGAGTTGCTCAATTTCTTTCGGTCTGGCATTGGCCGGTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGTTCAATCAACCGATCGATATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTttggtt                                                                                                                                                                                     <  1:164853/275‑1 (MQ=255)                                 caaacatcgattGATAGAAATCACCCACGTTGGTGCCAATACACACCTGAACTTGCCCGGCATTGGTGAAACAGCCTTTCACCATAGGGAGTTGCTCAATTTCTTTCGGTCTGGCATTGGCCGGTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGTTCAATCAACCGATCGATATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTTTGGTTGGCt                                                                                                                                                                                 <  2:79445/265‑1 (MQ=255)                                        tGCTTGATAGTAATCACCCACGTTGGTGCCAATCACCACCTGAAATTGCCCGGCATTGGTGAAACAGCCTTTCACCATAGGGAGTTGCTCAATTTCTTTCGGTCTGGCATTGGCCGGTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGTTCAATCAAc                                                                                                                                                                                                                                                      >  2:515693/1‑199 (MQ=255)                                            tGATAGTAATCACCCACGTTGGTGCCAATCACCACCTGAAATTGCCCGGCATTGGTGAAACAGCCTTTCACCATAGGGAGTTGCTCAATTTCTTTCGGTCTGGCATTGGCCGGTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGTTCAATCAACcgat                                                                                                                                                                                                                                                  <  1:515700/199‑1 (MQ=255)                                                                                      tGCCCGGCATTGGTGAAACAGCCTTTCACCATAGGGAGTTGCTCAATTTCTTTCGGCCTGGCATTGGCCGGTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGtt                                                                                                                                                                                                                                                              >  1:108810/1‑145 (MQ=255)                                                                                        cccGGCATTGGTGAAACAGCCTTTCACCATAGGGAGTTGCTCAATTTCTTTCGGTCTGGCATTGGCCGGTTGGTTGCGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCCGTTCAATCAACCGACCGATATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTTTGGTTGGCTGCAGAATATATTGCGCGGAAAAATTTAAAAACGAGAACGATCACGAAACGCAACg                                                                                                                          >  1:432888/1‑275 (MQ=255)                                                                                        cccGGCATTGGTGAAACAGCCTTTCACCATAGGGAGTTGCTCAATTTCTTTCGGTCTGGCATTGGCCGGTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGTTCAATCAACCGATCGATATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTttggtt                                                                                                                                                                                     >  2:563353/1‑216 (MQ=255)                                                                                        ccacgcaagggagAAACAGCCTGGCACGACATCGAGGTGCTCAATTTGTTGCTGACAGGAATTGGCCGGATGGTGGAAGACAAAGCGTGGGCGAGCAATGCAGGGGAGCACCGTCGCAATTTTGTCGCGCACGCCGACCAATTCAATCAACAGAGTGATATCCGTGTGGTTTATTTTTCTCATCATAAAGCCCCATGGCAGATGACATTTTTGGTTGGCTGCAGAATATATTGCGCGGAAAAATTTAAAAACGGGAACGGTCCCGAAACGCAGCg                                                                                                                          <  2:254946/263‑1 (MQ=255)                                                                                            gCATTGGTGAAACAGCCTTTCACCATAGGGAGTTGCTCAATTTCTTTCGGTCTGGCATTGGCCGGTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGTTCAATCAACCGATCGATATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTTTGGTTGGCt                                                                                                                                                                                 <  1:563362/216‑1 (MQ=255)                                                                                                       aCAGCCTTTCACCATAGGGAGTTGCTCAATTTCTTTCGGTCTGGCATTGGCCGGTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAaaaatgtcatctgccatggggctttatgatgagcaaaataaaccaaacggatatcg                                                                                                                                                                                                         >  2:254708‑M1/1‑125 (MQ=255)                                                                                                       aCAGCCTTTCACCATAGGGAGTTGCTCAATTTCTTTCGGTCTGGCATTGGCCGGTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGTTCAATCAACCGATCGATATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTTtgg                                                                                                                                                                                       <  2:674578‑M2/199‑4 (MQ=255)                                                                                                           ccTTTCACCATAGGGAGTTGCTCAATTTCTTTCGGTCTGGCATTGGCCGGTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAaaaatgtcatctgccatggggctttatgatgagcaaaataaaccaaacggatatcgatcg                                                                                                                                                                                                     <  1:254713‑M1/181‑61 (MQ=255)                                                                                                           ccTTTCACCATAGGGAGTTGCTCAATTTCTTTCGGTCTGGCATTGGCCGGTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGTTCAATCAACCGATCGATATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTttggttgg                                                                                                                                                                                   <  1:674587/199‑1 (MQ=255)                                                                                                                     cgcggccttccncnNTTTTTTTCGCCCTGGCAGTGGCCTGTTGGTTGAGGACACGGCGTAGGCGAGTAATAACGTGGCTCACCGGCGCATTATTGCCGCGCCCGCCGACCAGTTCAATCGACCGATCTATATACATTTGGTTTATTTTGCTCATCATAAAGCCCCATAGCAGATGACATTTTTGGTTGGCTGCAGAATATAGTGCGCGGAAAAATTTAAAAACGGGAACGTTCCCGAAACGCAGCGAAGATCACAATTTATCGTTCAGGAAACGa                                                                                             <  2:566672/265‑1 (MQ=255)                                                                                                                      aGGGAGTTGCTCAATTTCTTTCGGTCTGGCATTGGCCGGTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGTTCAATCAACCGATCGATATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTTtgg                                                                                                                                                                                       <  2:14424‑M2/184‑4 (MQ=255)                                                                                                                          aGTTGCTCAATTTCTTTCGGTCTGGCATTGGCCGGTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGTTCAATCAACCGATCGATATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTttggttgg                                                                                                                                                                                   <  1:14424/184‑1 (MQ=255)                                                                                                                             tGCTCAATTTCTTTCGGTCTGGCATTGGCCGGTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAaaaatgtcatctgccatggtgctttatgatgagcaaaataaaccaaacggatatcg                                                                                                                                                                                                         >  2:515990‑M1/1‑103 (MQ=255)                                                                                                                             tGCTCAATTTCTTTCGGTCTGGCATTGGCCGGTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAaaaatgtcatctgccatggggctttatgatgagcaaaataaactcaacggatatcn                                                                                                                                                                                                         >  1:664125‑M1/1‑103 (MQ=255)                                                                                                                             tGCTCAATTTCTTTCGGTCTGGCATTGGACGGTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAaaaatgtcatctgccatggggctttatgatgagcaaaataaaccaaacggatatcg                                                                                                                                                                                                         >  1:512279‑M1/1‑103 (MQ=255)                                                                                                                               cTCAATTTCTTTCGGTCTGGCATTGGCCGGTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGTTCAATCAACCGATCGATATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTTTGGTTGGCTGCAGAATATATTGCGCGGAAAAATTTAAAAACGGGAACGTTCCCGAAACACAGCTAAGACCACAATTNATCTTTCATTAAAcaaccaataca                                                                                     >  2:476314/1‑263 (MQ=255)                                                                                                                                 cAATTTCTTTCGGTCTGGCATTGGCCGGTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAaaaatgtcatctgccatggggctttatgatgagcaaaataaaccaaacggatatcgatcg                                                                                                                                                                                                     <  1:515997‑M1/159‑61 (MQ=255)                                                                                                                                 cAATTTCTTTCGGTCTGGCATTGGCCGGTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGTTCAATCAACCGATCGATATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTTTGGTTGGCTGCAGAATATATTGCGCAGAAAAATTTAAAAACGGGAACGTTCCCGAAACGCAGCGAAGATCACAATTTATCGTTCAGGAAACGATCAGGACAGGGt                                                                                 >  1:675226/1‑275 (MQ=255)                                                                                                                                 cAATTGCTGTCGGTCTGGCATTGGCCGGTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAaaaatgtcatctgccatggggctttatgatgagcaaaataaaccaaacggatatcgatcg                                                                                                                                                                                                     <  2:512272‑M1/159‑61 (MQ=255)                                                                                                                                                            gttggttgAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCA                                                                                                                                                                                                                                                                 <  2:58470‑M1/72‑1 (MQ=255)                                                                                                                                                             ttggttgAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGTTCAATCAACCGATCGATATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTTTGGTTGGCTGCAGAATATATTGCGCGGAAAAATTTAAAAACGGGAACGTTCCCGAAACGCAGCGAAGATCACAATTTATCGTTCa                                                                                                     >  2:496534/1‑227 (MQ=255)                                                                                                                                                                 ttgAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGTTCAATCAACCGATCGATATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTTTGGTTGGCTGCAGAATATATTGCGCGGAAAAATTTAAAAACGGGAACGTTCCCGAAACGCAGCGAAGATCACAATTTATCGTTCAGGaa                                                                                                 <  1:496541/227‑1 (MQ=255)                                                                                                                                                                      gACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGtt                                                                                                                                                                                                                                                              >  2:45367/1‑65 (MQ=255)                                                                                                                                                                          aaGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGTtcaat                                                                                                                                                                                                                                                          <  1:45367/65‑1 (MQ=255)                                                                                                                                                                          aaGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGTTCAATCAACCGATCGATATCCGTTTGGTTTATTTTGc                                                                                                                                                                                                                          >  2:25824/1‑97 (MQ=255)                                                                                                                                                                           aGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGTTCACTCCACCGACCGATATCCTTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCCGATGCCATTTttggtt                                                                                                                                                                                     >  2:536829/1‑133 (MQ=255)                                                                                                                                                                              gTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGTTCAATCAACCGATCGATATCCGTTTGGTTTATTTTGCtcat                                                                                                                                                                                                                      <  1:25824/97‑1 (MQ=255)                                                                                                                                                                               tAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGTTCAATCAACCGATCGATATCCGTTTGGTTTATTTTGCTCATCATAAAGCACCATGGCAGATTACATTTTTGGTTGGCt                                                                                                                                                                                 <  1:536837/133‑1 (MQ=255)                                                                                                                                                                                     aGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGTTCAATCAACCGATCGatat                                                                                                                                                                                                                                            >  1:410988/1‑68 (MQ=255)                                                                                                                                                                                         aTACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGTTCAATCAACCGATCGACATCCGt                                                                                                                                                                                                                                        <  2:410981/68‑1 (MQ=255)                                                                                                                                                                                          tACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGTTCACTCAACCGATCGATATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTttggtt                                                                                                                                                                                     >  1:684233/1‑118 (MQ=255)                                                                                                                                                                                            cAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGTTCAATCAACcgatcg                                                                                                                                                                                                                                                >  1:628070/1‑57 (MQ=255)                                                                                                                                                                                              gTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGTTCAATCAACCGATCGATATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTTTGGTTGGCt                                                                                                                                                                                 <  2:684224/118‑1 (MQ=255)                                                                                                                                                                                               tGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGTTCAATCAACCGATCGATCTCCGTTTGGTATATTTTGCTCATCATAAAACCCCATGGCAGATGACATTTCTGGTTGGCTGCAGAATATATTGCGCGGAAACATTTAAAAACGGGAACGTTCCCTAAACGCAGCTGAGAACCACATTTAACGTTCAGGAAACGATCAGGACAGGGGGGCGGGGCTGATGATTTGGTGAGGTTCGCTGCGCCCGGTTACCTGCGCGATCCCCTGGGaa                    >  2:714892/1‑274 (MQ=255)                                                                                                                                                                                               tGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGTTCAATCAACCGATCGATATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTTTGGTTGGCTGCAGAATATATTGCGCGGAAAAATTTAAAAACGGGAACGTTCCCGAAACGCAGCGAAGATCACAATTTATCGTTCAGGCAACGATCAGGACAGGGTGGCGGGGATGATGATTTGTTGCGGTTCGCTGCGCCCGGTTACCTGCGCGATCAACTGGCAAg                   >  1:704088/1‑275 (MQ=255)                                                                                                                                                                                                ggCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGTTCAATCAACCGATCGatat                                                                                                                                                                                                                                            <  2:628061/57‑1 (MQ=255)                                                                                                                                                                                                 gCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAaaaatgtcatctgccatggggctttatgatgagcaaaataaaccaaacggatatcg                                                                                                                                                                                                         >  2:12737‑M1/1‑35 (MQ=255)                                                                                                                                                                                                    caacGTCGCAATATTGCCGCGCCCGCCGACCAGTTCAATCAACCGATCGATATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCACGGCAGATGACATTGTTGGTTGGCTGCAGAATTTATTGCGCGGAAAAATTTAAAAACGGGAACGTTCCCGAAAAGCAGCGAACATACAAATTTATCGTTCAAGAAACGATCAGAACAGGGTGGTGGGGAAGATAATTTGTTGCGGTTCGCTGCGTCCGGTTTCCTGCGGGCTCCACTGTCGAtccgc               >  2:154946/4‑274 (MQ=255)                                                                                                                                                                                                    cACCGTCGCAATATTGCCGCGCCCGCCGACCAGTTCAATCAACCGATCGATATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTTtgg                                                                                                                                                                                       <  1:236011‑M2/106‑4 (MQ=255)                                                                                                                                                                                                     aCCGTCGCAATATTGCCGCGCCCGCCGACCAaaaatgtcatctgccatggggctttatgatgagcaaaataaaccaaacggatatcgatcg                                                                                                                                                                                                     <  1:12737‑M1/91‑61 (MQ=255)                                                                                                                                                                                                        gTCGCAATATTGCCGCGCCCGCCGACCAGTTCAATCAACCGATCGATATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTttggttgg                                                                                                                                                                                   <  2:236006/106‑1 (MQ=255)                                                                                                                                                                                                                 ttGCCGCGCCCGCCGACCAGTTCAATCAACCGATCGATATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTTTGGTTGGCTGCAGAATATATTGCGCGGAAAAATTTAAAAACGGGAACGTTCCCGAAACGCAGCGAAGATCACAATTTATCGTTCAGGAAACGATCAGGACAGGGAGGCGGGGATGATGATTTGTTGCGGTTCGCTGCGCCCGGTTACCTGCGGGACCACCTGGCAAGCCGCATGGCGTCCaccc  >  2:225219/1‑271 (MQ=255)                                                                                                                                                                                                                         cccgccGACCAGTTCAATCAACCGATCGATATCCGTTTGGTTTAtttt                                                                                                                                                                                                                            >  1:2722/1‑48 (MQ=255)                                                                                                                                                                                                                             ccgACCAGTTCAATCAACCGATCGATATCCGTTTGGTTTATTTTGCtc                                                                                                                                                                                                                        <  2:2722/48‑1 (MQ=255)                                                                                                                                                                                                                                 ccAaaaatgtcatctgccatggggctttatgatgagcaaaataaaccaaacggatatcgatcggttgattgaactggtcggcgggcgcggcaatattgcgacggtgagccactgtattactcgcctacgctttgtcctcaaccaaccggccaatgccagaccgaaagaaattgagcaactccctatggtgaaaggctgt                                                             <  2:674578‑M1/199‑197 (MQ=255)                                                                                                                                                                                                                                 ccAaaaatgtcatctgccatggggctttatgatgagcaaaataaaccaaacggatatcgatcggttgattgaactggtcggcgggcgcggcaatattgcgacggtgagccactgtattactcgcctacgctttgtcctcaaccaaccggccaatgccagaccgaaagaaattgagcaactccct                                                                            <  2:14424‑M1/184‑182 (MQ=255)                                                                                                                                                                                                                                 ccAaaaatgtcatctgccatggggctttatgatgagcaaaataaaccaaacggatatcgatcggttgattgaactggtcggcgggcgcggcaatattgcgacggtg                                                                                                                                                          <  1:236011‑M1/106‑104 (MQ=255)                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                                CTCTTTATCAACCTGCGCCTGTCCGGTTGACGCAATCAGTGCTTGATAGTAATCACCCACGTTGGTGCCAATCACCACCTGAAATTGCCCGGCATTGGTGAAACAGCCTTTCACCATAGGGAGTTGCTCAATTTCTTTCGGTCTGGCATTGGCCGGTTGGTTGAGGACAAAGCGTAGGCGAGTAATACAGTGGCTCACCGTCGCAATATTGCCGCGCCCGCCGACCAGTTCAATCAACCGATCGATATCCGTTTGGTTTATTTTGCTCATCATAAAGCCCCATGGCAGATGACATTTTTGGTTGGCTGCAGAATATATTGCGCGGAAAAATTTAAAAACGGGAACGTTCCCGAAACGCAGCGAAGATCACAATTTATCGTTCAGGAAACGATCAGGACAGGGTGGCGGGGATGATGATTTGTTGCGGTTCGCTGCGCCCGGTTACCTGCGCGATCAACTGGCAAGCCGCCTGGCGTCCAGCT  >  CP009273/4455725‑4456206

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.