| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4519391 | 74 (1.930) | 4 (0.110) | 4/294 | NT | 5.7% | coding (670/1314 nt) | sgcC | putative PTS system EIIC permease component |
| ? | CP009273 | = 4519682 | 63 (1.750) | coding (379/1314 nt) | sgcC | putative PTS system EIIC permease component | |||||
TTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCAACCTTTAAAGCCTTCACCAGCCGCCAGGCCAAAAATCAGACCGAGCACTACGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4519203‑4519391‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcactacgccATTACGGGTACGGTGGTCCAGCTTATGACCGGTAGCCTGATTTATGGTGTGCTGGGGGCAATCTGCCATGCGGCGCTATCGTTAAAAATGGCCGACTGGACGGCAAAACGGGTACAGAACATCGTCGGGCTGGAAGGTATTTCGATACCGCAAGGCTACGGTTC < CP009273/4519682‑4519519 TTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCAACCTTTAAAGCCTTCACCAGCCGCCAGGCCAAAAATCAGACCGAGCACTACGCCATTACGGGTACGTTGGTCCAGCTTATGACCGGTAGCCTGATTTATGGTGTGCTGGGGGCAATCTGCCATGCGGCGCTATCGTTAA > 1:228387/1‑274 CCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCAACCTTTAAAGCCTTCACCAGCCGCCAGGCCAAAAATCAGACCGAGCACTACGC > 1:525061/1‑126 gaagacGCGCCGGAAAAACCCCATCATGGCCCCAACGGTAATCACCAGACGGGCCCAACCTTGAAAGCCTTCACCAGCCGCCAGGCCAAAAATCAGACCGAGCACTACGCCATTACGGGTACGGTTGTCCAGCTTATGTCCGGTAGCCTGATTTATGGTGTGCTGGGGGCAATCTGCCATGCGGCGCTATCGTTAAAAATGGCCGACTGGACGGCAAAACGGGTACAGAACATCGTCGGGCTGGAAGGTATTTCGATACCGCAAGGCTACGGTTC < 2:228382/269‑1 GGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCAACCTTTAAAGCCTTCACCAGCCGCCAGGCCAAAAATCAGACCGAGCACT > 1:558928/1‑95 CAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCAACCTTTAAAGCCTTCACCAGCCGCCAGGCCAAAAATCAGACCGAGCACTACGC < 2:558919/95‑1 CTTCACCAGCCGCCAGGCCAAAAATCAGACCGAGCACTACGCCATTACGGGTACGGTGGTCCAGCTTATGACCGGTAGCCTGATTTATGGTGTGC > 1:57165/1‑95 ACCAGCCGCCAGGCCAAAAATCAGACCGAGCACTACGCCATTACGGGTACGGTGGTCCAGCTTATGACCGGTAGCCTGATTTATGGTGTGCTGGG < 2:57165/95‑1 ACTACGCCATTACGGGTACGGTGGTCCAGCTTATGACCGGTAGCCTGATTTATGGTGTGCTGGGGGCAATCTGCCATGCGGCGCTATCGTTAAAAATGGCCGACTGGACGGCAAAACG > 2:650003/1‑118 CGCCATTACGGGTACGGTGGTCCAGCTTATGACCGGTAGCCTGATTTATGGTGTGCTGGGGGCAATCTGCCATGCGGCGCTATCGTTAAAAATGGCCGACTGGACGGCAAAACGGGTACAGAACATCGTCGGGCTGGAAGGTATTTCGATACCGCAAGGCTACGGTT > 2:653729/1‑167 CGCCATTACGGGTACGGTGGTCCAGCTTATGACCGGTAGCCTGATTTATGGTGTGCTGGGGGCAATCTGCCATGCGGCGCTATCGTTAAAAATGGCCGACTGGACGGCAAAACGGGTA < 1:650012/118‑1 TTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCAACCTTTAAAGCCTTCACCAGCCGCCAGGCCAAAAATCAGACCGAGCACTACGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4519203‑4519391‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcactacgccATTACGGGTACGGTGGTCCAGCTTATGACCGGTAGCCTGATTTATGGTGTGCTGGGGGCAATCTGCCATGCGGCGCTATCGTTAAAAATGGCCGACTGGACGGCAAAACGGGTACAGAACATCGTCGGGCTGGAAGGTATTTCGATACCGCAAGGCTACGGTTC < CP009273/4519682‑4519519 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |