New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	4626348 =	39 (1.010)	9 (0.250)	7/292	NT	18.7%	coding (525/690 nt)	creB	response regulator in two‑component regulatory system with CreC
	?	CP009273	4626664 =	42 (1.180)					coding (152/1425 nt)	creC	sensory histidine kinase in two‑component regulatory system with CreB or PhoB, regulator of the CreBC regulon

CCCGGTTTAACTTCTTTGACAAAAATGGCCAGTACGAACCAGGCTGCCACCGCCACCAGTAAAAAATAGCCCAGCAACAACCGCATGCCGATACGCATTACAGGCCCCTCAGGCTATATCCCATGCCGCGATGAGTATTAATCGGTGAAAGATCGGGGTTGATGGCGCGCAGCTTGGCACGCAGCGTTTTAATGTGGGTATCGACGGTGCGATCGTAGGTGTCCTGCGCATCTTCCCATACGCTATCCATCAGTTGCTGGC‑GG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/4626610‑4626348 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttgctggc‑ggAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCGATGCGCAGGGCAAAGTATTGTTCGATTCGGCAAATAAAGCCGTTGGACAGGATTATTCGCGCTGGAATGACGTCTGGCTAAC  >  CP009273/4626664‑4626889                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CCCGGTTTAACTTCTTTGACAAAAATGGCCAGTACGAACCAGGCTGCCACCGCCACCAGTAAAAAATAGCCCAGCAACAACCGCATGCCGATACGCATTACAGGCCCCTCAGGCTATATCCCATGCCGCGATGAGTATTAATCGGTGAAAGATCGGGGTTGATGGCGCGCAGCTTGGCACGCAGCGTTTTAATGTGGGTATCGACGGTGCGATCGTAGGTGTCCTGCGCAGCTTCCCATACGCTATCCATCAGTTGCTGGCttgactagac                                                                                                                                                                                                                             >  2:120217/1‑261    GGTTTAACTTCTTTGACAAAAATGGCCAGTACGAACCAGGCTGCCACCGCCACCAGTAAAAAATAGCCCAGCAACAACCGCATGCCGATACGCATTACAGGCCCNTCAGGCTATATCACATGCCGCGATGAGTATTAATCGGTGAAAGATCGGGGTTGATGGCGCGCAGCTTGGCACGCAGCGTTTTAATGTGGGTATCGACGGTGCGATCGTAGGTGTCCTGCGCATCTTCCCATACGCTATCCATCAGTTGCTGG                                                                                                                                                                                                                                        <  1:596358/257‑1                                                             AAAAAATAGCCCAGCAACAACCGCATGCCGATACGCATTACAGGCCCCTCAGGCTATATCCCATGCCGCGATGAGTATTAATCGGTGAAAGATCGGGGTTGATGGCGCGCAGCTTGGCACGCAGCGTTTTAATGTGGGTATCGACGGTGCGATCGTAGGTGTCCTGCGCATCTTCCCATACGCTATCCATCAGTTGCTGGC‑GGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTA                                                                                                                                                             >  1:243683/1‑274                                                             AAAAAATAGCCCAGCAACAACCGCATGCCGATACGCATTACAGGCCCCTCAGGCTATATCCCATGCCGCGATGAGTATTAATCGGTGAAAGATCGGGGTTGATGGCGCGCAGCTTGGCACGCAGCGTTTTAATGTGGGTATCGACGGTGCGATCGTAGGTGTCATGCGCATCTTCCCATACGCTATCCATCAGTTGCTGGC‑GGAGCTGGCGCGTCCCGATTTGCGCACTGGGGACCCAACGCATGGGCAAGTGGCGCGGGCGTGTAAGCAGCctg                                                                                                                                                            >  2:21432/1‑272                                                                 AATAGCCCAGCAACAACCGCATGCCGATACGCATTACAGGCCCCTCAGGCTATATCCCATGCCGCGATGAGTATTAATCGGTGAAAGATCGGGGTTGATGGCGCGCAGCTTGGCACGCAGCGTTTTAATGTGGGTATCGACGGTGCGATCGTAGGTGTCCTGCGCATCTTCCCATACGCTATCCATCAGTTGCTGGC‑GGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGC                                                                                                                                                                          <  1:21432/257‑1                                                                                                         cccgccagtatagATCCCTGGCGGCGAGGAGTATTAATCGGTGAAAGTTCGGGGTTGATGGCGCGCAGCTTGGCACGCATCGTTTTAATGTGGGTATCGACGGTGCGATCGTAGGTGTCCTGCGCATCTTCCCATACGCTATCCAGCAGTTGCTGGC‑GGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTG                                                                                                                <  2:243678/262‑1                                                                                                                                                                                       AGCGTTTTAATGTGGGTATCGACGGTGCGATCGTAGGTGTCCTGCGCATCTTCCCATACGCTATCCATCAGTTGCTGGC‑GGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTACTCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTACCAAAGTGCGCAATGAATATCATGTCTATATAACCGATGCTCAAGGCCAAGTATTGTTCTATTCGGCAAATAAAACCGTTGGATAG                                  >  2:192245/1‑275                                                                                                                                                                                                  GTGGGTATCGACGGTGCGATCGTAGGTGTCCTGCGCATCTTCCCATACGCTATCCATCAGTTGCTGGC‑GGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCGATGCGCAGGGCAAAGTATTGTTCGATTCGGCAAATAAAGCCGTTGGACAGGATTATTCGCG                       <  1:192248/275‑1                                                                                                                                                                                                                       GTAGGTGTCCTGCGCATCTTCCCATACGCTATCCATCAGTTGCTGGCGGGACCAGACGCGGCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTT                                                                                                                                                                      >  2:285628/1‑112                                                                                                                                                                                                                       GTAGGTGTCCTGCGCATCTTCCCATACGCTATCCATCAGTTGCTGGC‑GGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCGATGCGCAGGGCAAAGTATTGTTCGATTCGGCAAATAAAGCCGTTGGACAGGATTATTCGCGCTGGAATGACGTCTGGCTAAC  >  1:575382/1‑275                                                                                                                                                                                                                           GTGTCCTGCGCATCTTCCCATACGCTATCCATCAGTTGCTGGCGGGACCAGACGCGGCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATC                                                                                                                                                                  <  1:285633/112‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CCCGGTTTAACTTCTTTGACAAAAATGGCCAGTACGAACCAGGCTGCCACCGCCACCAGTAAAAAATAGCCCAGCAACAACCGCATGCCGATACGCATTACAGGCCCCTCAGGCTATATCCCATGCCGCGATGAGTATTAATCGGTGAAAGATCGGGGTTGATGGCGCGCAGCTTGGCACGCAGCGTTTTAATGTGGGTATCGACGGTGCGATCGTAGGTGTCCTGCGCATCTTCCCATACGCTATCCATCAGTTGCTGGC‑GG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/4626610‑4626348 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttgctggc‑ggAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCGATGCGCAGGGCAAAGTATTGTTCGATTCGGCAAATAAAGCCGTTGGACAGGATTATTCGCGCTGGAATGACGTCTGGCTAAC  >  CP009273/4626664‑4626889

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.