New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	4626348 =	39 (1.010)	9 (0.250)	7/292	NT	18.7%	coding (525/690 nt)	creB	response regulator in two‑component regulatory system with CreC
	?	CP009273	4626664 =	42 (1.180)					coding (152/1425 nt)	creC	sensory histidine kinase in two‑component regulatory system with CreB or PhoB, regulator of the CreBC regulon

GCCTGCTTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGTTTGACACGCCATTAGCGCTGACTCGGTATGAGTTTTTATTGTTGAAGACGTTACTCAAGTCACCGGGCCGCGTCTGGTCCC‑GCCAGCAACTGATGGATAGCGTATGGGAAGATGCGCAGGACACCTACGATCGCACCGTCGATACCCACATTAAAACGCTGCGTGCCAAGCTGCGCGCCATCAACCCCGATCTTTCACCGATTAATACTCATCGCGGCATGGGATATAGCCTGAGGGGCCTGTAATGCGTATCGGCATGCGGTTGTTGCTGGGCTATTTTTTACTGGTGGCGGTGGCAGCCTGGTTCGTACTGGCC  >  CP009273/4626092‑4626584                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                              gCCTGGTTGGGCTGGAAATTGGTTCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGTTTGACACGCCATTAGCGCTGACTCGGTATGAGTTTTTATTGTTGAAGACGTTACTCAAGTCACCGGGCCGCGTCTGGTCCC‑GCCAGCAACTGATGGa                                                                                                                                                                                                                             <  1:74407/274‑1 (MQ=255) gCCTGCTTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGTTTGACACGCCATTAGCGCTGACTCGGTATGAGTTTTTATTGTTGAAGACGTTACTCAAGTCACCGGGCCGCGTCTGGTCCC‑GCCAGCAACTGATGGa                                                                                                                                                                                                                             <  1:182779/274‑1 (MQ=255)  ccTGCTTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCGGGGTTGACACGCCCTTATCGCTGACTCGGTAAGAGTATTACGTGTTGAAGACGTTACTCAAGGCACCGGGCCGCGGATAGTCCC‑TCCCGANNCTGATAGac                                                                                                                                                                                                                            >  2:74406/1‑273 (MQ=255)                               gttagccagacgtcattccagcgcgaataatcctgtccaacggctttatttgccgaatcgaacaatactttgccctgcgcatcggtcatatagacatgatattcattgcgcactttgttaatgccaccgatattggcgcgaaacgggcgatgttgtagctgattaaacgcctgcgccagttgcccatgcgttgggtccccagagagcaaatcgggacgcgccagctCC‑GCCAGCAACTGATGGATAGCGTATGGGAAGATGCGCAGGACACCTAc                                                                                                                                                                                              >  1:575382‑M1/227‑275 (MQ=255)                                 tACGTGGCTAAACCGGTTTCACCCAGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGTTTGACACGCCATTAGCGCTGACTCGGTATGAGTTTTTANTGTTGAAGACGTTACTCAAGTCACCGGGCCGCGTCTGGTCCC‑GCCAGCAACTGATGGATAGCGTATGGGAAGATGCGCAGGACACCTAcc                                                                                                                                                                                             >  1:504670/1‑273 (MQ=255)                                        cTAAACCGTTTTCACACCGCGAACGGTGCTCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGTTTGACACGCCATTAGCGCTGACTCGGTATGAGTTTTTATTGTTGANGACGTTACTCAAGTCACCGGGCCGCGTCTGGTCCC‑GCCAGCAACTGATGGATAGCGTATGGGAAGATGCGCAGGACACCTACGAACACAcc                                                                                                                                                                                     >  1:496604/1‑275 (MQ=255)                                                    cgcgaataatcctgtccaacggctttatttgccgaatcgaacaatactttgccctgcgcatcggtcatatagacatgatattcattgcgcactttgttaatgccaccgatattggcgcgaaacgggcgatgttgtagctgattaaacgcctgcgccagttgcccatgcgttgggtccccagagagcaaatcgggacgcgccagctCC‑GCCAGCAACTGATGGATAGCGTATGGGAAGATGCGCAGGACACCTACGATCGCACCGTCGATACCcac                                                                                                                                                                         <  1:192248‑M1/70‑1 (MQ=255)                                                      acacgtgatgtgtGCGCCAGGGTGACCTCCTTCCTTCGTCGTGTCGAGATGTTCTCGACGCCGTCTCCCGTCTTCCGTATTGTACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGTTTGACACGCCATTAGCGCTGCCTCGGTATGAGTTTTTATTGTTGAAGACGTTACTCAAGTCACCGGGCCGCGTCTGGTCCC‑GCCAGCAACTGATGGATAGCGTATGGGAAGATGCGCAGGACACCTACGATCGCACCGTCGATACCcaca                                                                                                                                                                        <  2:504663/265‑1 (MQ=255)                                                               ctatccaacggttttatttgccgaatagaacaatacttggccttgagcatcggttatatagacatgatattcattgcgcactttggtaatgccaccgatattggcgcgaaacgggcgatgttgtagctgagtaaacgcctgcgccagttgcccatgcgttgggtccccagagagcaaatcgggacgcgccagctCC‑GCCAGCAACTGATGGATAGCGTATGGGAAGATGCGCAGGACACCTACGATCGCACCGTCGATACCCACATTAAAACGCt                                                                                                                                                              >  2:192245‑M1/195‑275 (MQ=255)                                                                                  ccTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACANTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGTTTGACACGCCATTAGCGCTGACTCGGTATGAGTTTTTATTGTTGAAGACGTTACTCAAGTCACCGGGCCGCGTCTGGTCCC‑GCCAGCAACTGATGGATAGCGTATGGGAAGATGCGCTGGACACATACGATCGCACCGTCGATAcc                                                                                                                                                                            <  1:506160/242‑1 (MQ=255)                                                                                             cGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGTTTGACACGCCATTAGCGCTGACTCGGTATGAGTTTTTATTGTTGAAGACGTTACTCAAGTCACCGGGCCGCGTCTGGTCCC‑GCCAGCAACTGATGGATNGCGTATGGGAAGATGCGCAGGACACCTACGATCGCACCGTCGATACCCACATTAAAACGCTGCGTGCCAAGCTGCGCGCCATCAACCCCGa                                                                                                                                >  1:558542/1‑275 (MQ=255)                                                                                                                               tCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGTTTGACACGCCATTAGCGCTGACTCGGTATGAGTTTTTATTGTTGAAGACGTTACTCAAGTCACCGGGCCGCGTCTGGTCCC‑GCCAGCAACTGATGGATAGCGTATGGGAAGa                                                                                                                                                                                                              >  2:549579/1‑163 (MQ=255)                                                                                                                                   tATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGTTTGACACGCCATTAGCGCTGACTCGGTATGAGTTTTTATTGTTGAAGACGTTACTCAAGTCACCGGGCCGCGTCTGGTCCC‑GCCAGCAACTGATGGATAGCGTATGGGAAGATgcg                                                                                                                                                                                                          <  1:549588/163‑1 (MQ=255)                                                                                                                                        gACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGTTTGACACGCCATTAGCGCTGACTCGGTATGAGTTTTTATTGTTGAAGACGTTACTCAAGTCACCGGGCCGCGTCTGGTCCC‑GCCAGCAACTGATGGATAGCGTAGAGGAAGATGCGNAGGACACCTACGATCGCACCGTCGATACCCACATTAAAACGCTGCGTGCCAAGCTGCGCGCCATCAACCCCGATCt                                                                                                                             >  1:647170/1‑235 (MQ=255)                                                                                                                                         acgttttGATTTGAATGGACCCGCGGCGCAGATCAGCTGGTTGGACACGCCATTAGCGCTGACTCGGTATGCGTTTTTATTGTTGAAGACGTTACTATAGTCACCGGGCCGCGTCTGGTCCC‑GCCAGCAACTGATGGATAGCGTATGGGAAGATGCGCAGGACACCTACGATCGCACCGTCGATACCCACATTAAAACGCTGCGTGCCAAGCTGCGCGCCATCAACCCCGATCTTTCACCGATTAATACTCATCGCGGCATGGGATATAGCCTGa                                                                                    <  1:397894/272‑1 (MQ=255)                                                                                                                                         aCATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGTTTGACACGCCATTAGCGCTGACTCGGTATGAGTTTTTATTGTTGAAGACGTTACTCAAGTCACCGGGCCGCGTCTGGTCCC‑GCCAGCAACTGATGGATAGCGTATGGGAAGATGCGCAGGACACCTACGATCGCACCGTCGATACCCACATTAAAACGCTGCGTGCCAAGCTGCGCGCCATCAACCCCGATCTTTCACCGATTAATACTCATCGCGGCATGGGATATAGCCTGa                                                                                    <  1:446097/275‑1 (MQ=255)                                                                                                                                          cATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGTTTGACACGCCATTAGCGCTGACTCGGTATAAGTTTTTATTGTTGAAGACGTTACTCAAGTCACCGGGCCGCGTCTGGTCCC‑GCCAGCAACTGATGGATAGCGTATGGAAAGATGCGCANGAAACCTACGATCGCACCGTCGATACCCACATTAAAACGCTGCGTGCCAAGCTGCGCGCCATCACCCCCGATCTTTCCCCGATTACTACTCCTCGCGGCCTCGGATATAACCagag                                                                                   >  1:669691/1‑275 (MQ=255)                                                                                                                                           atgatgaattgaatGAGCCCGCGGAGGCGGTCGGTTGGTTTGACACGCCATTAGCGCTTATTCGGTATGAGTTTTTATGGTTGAAGACGTTACTCAAGTCACCGGGCCGCGTCTGGTCCC‑GCCAGCAACTGATGGATAGCGTATGGGAAGATGCGCAGGACACCTACGATCGCACCGTCGATACCCACATTAAAACGCTGCGTGCCAAGCTGCGCGCCATCAACCCCGATCTTTCACCGATTAATACTCATCGCGGCATGGGATATAGCCTGAgg                                                                                  <  2:496597/271‑1 (MQ=255)                                                                                                                                             tttGAATTGAATGAACCCGCGGCGCAGATCAGCTGGTTTGACACGCCATTAGCGCTGACTCGGTATGAGTTTTTATTGTTGAAGACGTTACTCAAGTCACCGGGCCGCGTCTGGTCCC‑GCCAGCAACTGa                                                                                                                                                                                                                                 >  2:154492/1‑130 (MQ=255)                                                                                                                                             tttGAATTGAATGAACCCGCGGCGCAGATCAGCTGGTTTGACACGCCATTAGCGCTGACTCGGTATGAGTTTTTATTGTTGAAGACGTTACTCAAGTCACCGGGCCGCGTCTGGTCCC‑GCCAGCAACTGATGGATAGCGTATgg                                                                                                                                                                                                                   >  1:356341/1‑144 (MQ=255)                                                                                                                                             cactttgttaatgccaccgatattggcgcgaaacgggcgatgttgtagctgattaaacgcctgcgccagttgcccatgcgttgggtccccagagagcaaatcgggacgcgccagctCC‑GCCAGCAACTGCTGGATAGCGTATGGGAAGATGCGCAGGACACCTACGATCGCACCGTCGATACCCACATTAAAACGATGCGTGCCAAGCTGCGCGCCATCAACCCCGAACTTTCACCGATTAATACTCctcgccgccagggatctatactggcggg                                                                                <  2:243678‑M1/159‑14 (MQ=255)                                                                                                                                                 aattgaatGAACCCGCGGCGCAGATCAGCTGGTTTGACACGCCATTAGCGCTGACTCGGTATGAGTTTTTATTGTTGAAGACGTTACTCAAGTCACCGGGCCGCGTCTGGTCCC‑GCCAGCAACTGATGGa                                                                                                                                                                                                                             <  1:154495/130‑1 (MQ=255)                                                                                                                                                 aattgaatGAACCCGCGGCGCAGATCAGCTGGTTTGACACGCCATTAGCGCTGACTCGGTATGAGTTTTTATTGTTGAAGACGTTACTCAAGTCACCGGGCCGCGTCTGGTCCC‑GCCAGCAACTGATGGATAGCGTATGGGAAg                                                                                                                                                                                                               <  2:356335/144‑1 (MQ=255)                                                                                                                                                           aCCCTCGGCGCAGATCAGCTGGTTTGACACGCCATTAGCGCTGACTCTGTATGAGTTTTTATTGGTGAAGACGTTACTCAAGTCACCGTGCCGCGTCTGGTCCC‑GCCAGCAACTGATGGATAGCGTATTGGAAGATGCGCAGGACACCTACGATCGCACCGTCGATACCCACATTAAAACGCTGCGTGCCAAGCTGCGCGCCAt                                                                                                                                         <  1:121620/204‑1 (MQ=255)                                                                                                                                                                        aTCAGCTGGTTTGACACGCCATTAGCGCTGACTCGGTATGAGTTTTTATTGTTGAAGACGTTACTCAAGTCACCGGGCCGCGTCTGGTCCC‑GCCAGCAACTGATGGATAGCGTATGGGAAGATGCGCAGGACACCTACGATCGCACCGTCGATACCCACATTAAAACGCTGCGTGCCAAGCTGCGCGCCATCAACCCCGATCTTTCACCGATTAATACTCATCGCGGCATGGGATATAGCCTGAGGGGCCTGTAATGCGTATCGGCATGCGgtgg                                                     >  1:287742/1‑273 (MQ=255)                                                                                                                                                                             cTGGTTTGACACGCCATTAGCGCTGACTCGGTATGAGTTTTTATTGTTGAAGACGTTACTCAAGTCACCGGGCCGCGTCTGGTCCC‑GCCAGCAACTGATGGATAGCGTATGGGAAGATGCGCAGGACACCTACGATCGCACCGTCGATACCCACATTAAAACGCTGCGTGCCAAGCTGCGCGCCATCAACCCCGATCTTTCACCGATTAATACTCATCGCGGCATGGGATATAGCCTGAGGGGCCTGTAATGCGTATCGGCATGCGGttgttg                                                  >  1:184431/1‑273 (MQ=255)                                                                                                                                                                                gTTTTACCCGCCGTTAACGCTGACTCCGTATGAGTGTTTATTGTTGAAGACGTTACTCAAGTCACCGGGCCGCGTCTGGTCCC‑GCCAGCAACTGATGGATAGCGTACGAGAAGATGCGCAGTACACCTACGATCGCACCGTCGATACCCACATTAAAACGCTGCGTGCCAAGCTGCGCGCCATCAACCCCGATCTTTCACCGATTAATACTCATCGCGGCATGGGATATAGCCTGAGGGGCCTGTAATGCGTATCGGCATGCGGTTGTTGCTggg                                             <  1:26007/275‑1 (MQ=255)                                                                                                                                                                                    gaatcgcgATTAGCGCTGACGCGGTGTAAGTTTTCCTTGCGTAAGACGTTACTCACGTCATCGGACAGCGGCGGGGCCC‑GCCAGCAACGGATGGATAGCGGATGGGAAGATGCGCAGGACACCTACGAGCGCACCGTCGAGACCCACATTAAAACGCTGGTTGCCAAGCTGCGCGCAATCAACCCCGATCTTTCACCGATTAATACTCATCGCGTCATGGGATATAGCCTGAGGTGCCTGTAATGCGTATCGGCATGCGGTTGTTGCTGGGCTa                                          <  2:669682/270‑1 (MQ=255)                                                                                                                                                                                         caggctgcttacacgcccgcgccacttgcccatgcgttgggtccccagtgcgcaaatcgggacgcgccagctCC‑GCCAGCAACTGATGGATAGCGTATGGGAAGATGCGCATGACACCTACGATCGCACCGTCGATACCCACATTAAAACGCTGCGTGCCAAGCTGCGCGCCATCAACCCCGATCTTTCACCGATTAATACTCATCGCGGCATGGGATATAGCCTGAGGGGCCTGTAATGCGTATCGGCATGCGGTTGTTGCTGGGCTAtttttt                                    >  2:21432‑M1/73‑275 (MQ=255)                                                                                                                                                                                          tagctgattaaacgcctgcgccagttgcccatgcgttgggtccccagagagcaaatcgggacgcgccagctCC‑GCCAGCAACTGATGGATAGCGTATGGGAAGATGCGCAGGACACCTACGATCGCACCGTCGATACCCACATTAAAACGCTGCGTGCCAAGCTGCGCGCCATCAACCCCGATCTTTCACCGATTAATACTCATCGCGGCATGGGATATAGCCTGAGGGGCCTGTAATGCGTATCGGCATGCGGTTGTTGCTGGGCTAtttttt                                    >  1:243683‑M1/72‑274 (MQ=255)                                                                                                                                                                                               gattaaacgcctgcgccagttgcccatgcgttgggtccccagagagcaaatcgggccgcgtctggtCCCGCCAGCAACTGATGGATAGCGTATGGGAAGATGCGCAGGacac                                                                                                                                                                                                  <  1:285633‑M1/46‑1 (MQ=255)                                                                                                                                                                                                   aaacgcctgcgccagttgcccatgcgttgggtccccagagagcaaatcgggccgcgtctggtCCCGCCAGCAACTGATGGATAGCGTATGGGAAGATGCGCAGGACACCTAc                                                                                                                                                                                              >  2:285628‑M1/63‑112 (MQ=255)                                                                                                                                                                                                     gACTCGGTATGAGTTTTTATTGTTGAAGACGTTACTCAAGTCACCGGGCCGCGTCTGGTCCC‑GCCAGCAAc                                                                                                                                                                                                                                    >  2:705958/1‑71 (MQ=255)                                                                                                                                                                                                     gACTCGGTATGAGTTTTTATTGTTGAAGACGTTACTCAAGTCACCGGGCCGCGTCTGGTCCC‑GCCAGCAACTGATGGATAGCGTATGGGAAGATGCGCAGGACACCTACGATCGCACCGTCGATACCCACATTaa                                                                                                                                                                    >  2:229584/1‑135 (MQ=255)                                                                                                                                                                                                     gACTCGGTATGAGTTTTTATTGTTGAAGACGTTACTCAAGTCACCGGGCCGCGTCTGGTCCC‑GCCAGCAACTGATGGATAGCGTATGGGAAGATGCGCAGGACACCTACGATCGCACCGTCGATACCCACATTAAAACGCTGCGTGCCAAGCTGCGCGCCATCAACCCCGATCTTTCACCGATTAATACTCATcgcg                                                                                                      >  1:209574/1‑197 (MQ=255)                                                                                                                                                                                                       gcctgcgccagttgcccatgcgttgggtccccagagagcaaatcgggacgcgccagctCC‑GCCAGCAACTGATGGATAGCGTATGGGAAGATGCGCAGGACACCTACGATCGCACCGTCGATACCCACATTAAAACGCTGCGTGCCAAGCTGCGCGCCATCAACCCCGATCTTTCACCGATTAATACTCATCGCGGCATGGGATATAGCCTGAGGGGCCTGTAATGCGTATCGGCATGCGGTTGTTGCTGGGCTAtt                                        <  1:21432‑M1/199‑1 (MQ=255)                                                                                                                                                                                                         cGGTATGAGTTTTTATTGTTGAAGACGTTACTCAAGTCACCGGGCCGCGTCTGGTCCC‑GCCAGCAACTGAt                                                                                                                                                                                                                                <  1:705968/71‑1 (MQ=255)                                                                                                                                                                                                         cGGTATGAGTTTTTATTGTTGAAGACGTTACTCAAGTCACCGGGCCGCGTCTGGTCCC‑GCCAGCAACTGATGGATAGCGTATGGGAAGATGCGCAGGACACCTACGATCGCACCGTCGATACCCACATTAAAACg                                                                                                                                                                <  1:229589/135‑1 (MQ=255)                                                                                                                                                                                                         cGGTATGAGTTTTTATTGTTGAAGACGTTACTCAAGTCACCGGGCCGCGTCTGGTCCC‑GCCAGCAACTGATGGATAGCGTATGGGAAGATGCGCAGGACACCTACGATCGCACCGTCGATACCCACATTAAAACGCTGCGTGCCAAGCTGCGCGCCATCAACCCCGATCTTTCACCGATTAATACTCATCGCGGCAt                                                                                                  <  2:209570/197‑1 (MQ=255)                                                                                                                                                                                                          ggTATGAGTTTTTATTGTTGAAGACGTTACTCAAGTCACCGGGCCGCGTCTGGTCCC‑GCCAGCAACTGATGGATAGCGTATGGGAAGATGCGCAGGACACCTACGATCGCACCGTCGATACCCACATTAAAACGCTGCGTGCCAAGCTGCGCGCCATCAACCCCGATCTTTCACCGATTAATACTCATCGCGGCATGGGATATAGCCTGAGGGGCCTGTAATGCGTATCGGCATGCGGTTGTTGCTGGGCTATTTTTTACTGGTGGCGGTGGCAg                   >  1:120218/1‑275 (MQ=255)                                                                                                                                                                                                           gtgtGAGTTTTTATTGTTGAAGACGTTACTCAAGTCACCGGGCCGCGTCTGGTCCC‑GCCAGCAACTGATGGATAGCGTATGGGAAGATGCGCAGGACACCTACGATCGCACCGTCGATACCCACATTAAAACGCTGCGTGCCAAGCTGCGCGCCATCAACCCCGATCTTTCACCGATTAATACTCATCGCGGCATGGGATATAGCCTGAGGGGCCTGTAATGCGTATCGGCATGCGGTTGTTGCTGGGCTATTTTTTACTGGTGGCGGTGGCAGc                  <  2:184428/272‑1 (MQ=255)                                                                                                                                                                                                                aGTTTTTATTGTTGAAGACGTTACTCAAGTCACCGGGCCGCGTCTGGTCCC‑GCCAGCAACTGATGGATAGCGTATGGGAAGATGCGCAGGACACCTACGATCGCACCGTCGATACCCACATTAAAACGCTGCGTGCCAAGCTGCGCGCCATCAACCCCGATCTTTCACCGATTAATACTCATCGCGCCATGGGATATAGCCTGAGGGGCCTGTAATGCGTACAGGCCTGCCGTTGGTGCTGGGCTCTTGGTTAGTggtgggggtgtgcggccgcg             >  2:543989/1‑265 (MQ=255)                                                                                                                                                                                                                      tATTGTTGAAGACGTTACTCAAGTCACCGGGCCGCGTCTGGTCCC‑GCCAGCAACTGATGGATAGCGTATGGGAAGATGCGCAGGACACCTACGATCGCACCGTCGATACCCACATTAAAACGCTGCGTGACAAGCTGCGCGCAATCAACCCCGATCTTTCACCGATTAATACTCATCGCGGCATGGGATATAGCCTGAGGGGCCTGTAATGCGTATCGGCATGCGGTTGTTGCTGGGCTATTTTGTACTGGTGGCGGTGGCAGCCTGGTTCggaa       >  1:242483/1‑272 (MQ=255)                                                                                                                                                                                                                           ttgAAGACGTTACTCAAGTCACCGGGCCGCGTCTGGTCAC‑GCCAGCAACTGATGGATAGCGTATGGGAAGATGCGCAGGACACCTACGATCGCACCGTCGATACCCACATTAAAACGCTGCGTGCCAAGCTGCGCGCCATCAACCCCGATCTTTCACAGATTAATACTCATCACGGCATGGGATATAGCCTCAGCGGCCTGTAATGCGTAGCGGCATGCGGGTGTGGCTGGCCTCTTTTTTACGGGTGGCGTGGGCCGCTGGGTTCGttgtggac  >  2:669200/1‑268 (MQ=255)                                                                                                                                                                                                                                     tACTCAAGTCACCGGGCCGCGTCTGGTCCC‑GCCAGCAACTGATGGATAGCGTATGGGAAGATGCGCAGGACACCTACGATCGCACCGTCGATACCCACATTAAAACGCTGCGTGCCAAGCTGCGCGCCATCAACCCCGATCTTTCACCGATTAATACTCATcg                                                                                                        >  1:738/1‑163 (MQ=255)                                                                                                                                                                                                                                         cAAGTCACCGGGCCGCGTCTGGTCCC‑GCCAGCAACTGATGGATAGCGTATGGGAAGATGCGCAGGACACCTACGATCGCACCGTCGATACCCACATTAAAACGCTGCGTGCCAAGCTGCGCGCCATCAACCCCGATCTTTCACCGATTAATACTCATCGCGGc                                                                                                    <  2:738/163‑1 (MQ=255)                                                                                                                                                                                                                                               aCCGGGCCGCGTCTGGTCCC‑GCCAGCAACTGATGGATAGCGTATGGGAAGATGCGCAGGACACCt                                                                                                                                                                                                >  1:433170/1‑65 (MQ=255)                                                                                                                                                                                                                                                   ggCCGCGTCTGGTCCC‑GCCAGCAACTGATGGATAGCGTATGGGAAGATGCGCAGGACACCTACGa                                                                                                                                                                                            <  2:433163/65‑1 (MQ=255)                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                              GCCTGCTTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGTTTGACACGCCATTAGCGCTGACTCGGTATGAGTTTTTATTGTTGAAGACGTTACTCAAGTCACCGGGCCGCGTCTGGTCCC‑GCCAGCAACTGATGGATAGCGTATGGGAAGATGCGCAGGACACCTACGATCGCACCGTCGATACCCACATTAAAACGCTGCGTGCCAAGCTGCGCGCCATCAACCCCGATCTTTCACCGATTAATACTCATCGCGGCATGGGATATAGCCTGAGGGGCCTGTAATGCGTATCGGCATGCGGTTGTTGCTGGGCTATTTTTTACTGGTGGCGGTGGCAGCCTGGTTCGTACTGGCC  >  CP009273/4626092‑4626584

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.