New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	4626348 =	39 (1.010)	9 (0.250)	7/292	NT	18.7%	coding (525/690 nt)	creB	response regulator in two‑component regulatory system with CreC
	?	CP009273	4626664 =	42 (1.180)					coding (152/1425 nt)	creC	sensory histidine kinase in two‑component regulatory system with CreB or PhoB, regulator of the CreBC regulon

TGCGTGCCAAGCTGCGCGCCATCAACCCCGATCTTTCACCGATTAATACTCATCGCGGCATGGGATATAGCCTGAGGGGCCTGTAATGCGTATCGGCATGCGGTTGTTGCTGGGCTATTTTTTACTGGTGGCGGTGGCAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCGATGCGCAGGGCAAAGTATTGTTCGATTCGGCAAATAAAGCCGTTGGACAGGATTATTCGCGCTGGAATGACGTCTGGCTAACGTTGCGT  >  CP009273/4626428‑4626896                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                         tGCGTGCCAAGCTGCGCGCCATCAACTCCGATCTCTCACCGATTAATACTCATCGCGGCATGGGATATAGCCTGAGGGGCCTGTAATGCGTATCGGCATGCGGTTGTTGCTGGGCTATTTTTTACTGGTGGCGGTGGCAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGTAGTTAAACCGGGNGTTCGAAGNGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACg                                                                                                                                                                                                     >  1:473897/1‑274 (MQ=255)                           cccGTTCTTTCACCGGTTAATATTCAGCGCGGTATGGGATATAGCCTGGGGGGCCTGTAATGCGTATCGGCATGCGGTTGTTGCTGGGCTATTTTTTACTGGTGGCGGTGGCAGCNTGGTTCGTACGCGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTaa                                                                                                                                                                           <  1:669209/274‑1 (MQ=255)                           cccGATTTTTCACCGATTAATACTCATCGCGGCATGGGATATAGCCTGAGGGGCCTGTAATGCGTATCGGCATGCGGTTGTTGCTGGGCTNTTTTTTACTGGTGGCGGTGTCAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTaa                                                                                                                                                                           <  1:543998/274‑1 (MQ=255)                            ccGTTCTTTTCCCGATTGATACTCATCGCGGCATGGGATATAGCCTGAGGGGCCTGTAATGCGTATCGGCATGCGGTTGTTGCTGGGCTATNTTTTACTGGTGGCGGTGGCAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATc                                                                                                                                                                         <  1:545222/275‑1 (MQ=255)                                  aaaaaatagcccagcaacaaccgcatgccgatacgcattacaggcccctcaggctatatcccatgccgcgatgagtattaatcggtgaaagatcggggttgatggcgcgcagcttggcacgcagcgttttaatgtgggtatcgacggtgcgatcgtaggtgtcctgcgcatcttcccatacgctatccatcagttgctggcggAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTa                                                                                                                                                                    >  1:243683‑M2/204‑274 (MQ=255)                                  aaaaaatagcccagcaacaaccgcatgccgatacgcattacaggcccctcaggctatatcccatgccgcgatgagtattaatcggtgaaagatcggggttgatggcgcgcagcttggcacgcagcgttttaatgtgggtatcgacggtgcgatcgtaggtgtcatgcgcatcttcccatacgctatccatcagttgctggcggAGCTGGCGCGTCCCGATTTGCGCACTGGGGACCCAACGCATGGGCAAGTGGCGCGGGCGTgtaagcagcctg                                                                                                                                                                   >  2:21432‑M2/204‑272 (MQ=255)                                      aatagcccagcaacaaccgcatgccgatacgcattacaggcccctcaggctatatcccatgccgcgatgagtattaatcggtgaaagatcggggttgatggcgcgcagcttggcacgcagcgttttaatgtgggtatcgacggtgcgatcgtaggtgtcctgcgcatcttcccatacgctatccatcagttgctggcggAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGc                                                                                                                                                                                 <  1:21432‑M2/58‑1 (MQ=255)                                                                    taGCATGTGGTGCCTGTAAGGCGTATCGGCATGCGGTTGTTTCTGGGCTATTTTTTACTGTTGGCGCTGGCAGCCTGGGTCGTACTGGCCATTTTTGTCACAGCAGTTCAGCCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGCTCGACACAGCAACGTTGCTGGCGGCGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCa                                                                                                                                  <  2:287737/274‑1 (MQ=255)                                                                          gAGGGGCGTGTAATGCGTATCGGCATGAGGGTGTTGATGGGATATTTTTTACTGGTGGCGGTGGCAGCCTGGTTCGTACTGGCCGTTGTTGTCAAAGAAGTTAAAGCGGGCGTGCGAAGAGCAACGGAGGGTACGTTGATAGACACAGCAACGTTGATGGAGGAGCAGGCGCGTCACGAGTTGCTCGCAGGGGAACCAAAGCATGGGCAAGTGGCACAGGCGTAGAAGCAGCGACAACAGAGCCAGGGTAACGCCAACAGCGGTggactacccta                                                                                                                           >  2:198899/1‑266 (MQ=255)                                                                          gAGGGGCCTGTAATGCGTATCGGCATGCGGTTGTTGCTGGGCTATTTTTTACTGGTGGCGGTGGCAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTaaga                                                                                                                            >  1:113580/1‑272 (MQ=255)                                                                              cccgccagtatagatccctggcggcgaggagtattaatcggtgaaagttcggggttgatggcgcgcagcttggcacgcatcgttttaatgtgggtatcgacggtgcgatcgtaggtgtcctgcgcatcttcccatacgctatccagcagttgctggcggAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTg                                                                                                                       <  2:243678‑M2/116‑1 (MQ=255)                                                                                  tGTAATGCGGATGGGGATGCGGTTTTTTTTGGGCTTTTTTTTACTGGTGGCGGTGGCAGCCTGGTTCGTACTGGCCATTTTTNTCAAAGAANTTAAACCGGGCGCGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCACTATCGGTGGCATTAACAAAGTGCGCa                                                                                                                   <  1:461262/275‑1 (MQ=255)                                                                                          gtttCGGCATTCGGTTGTTGCTTGGCTATTTTTTACTGTTGGCGGTTGCAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGTGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAata                                                                                                            <  1:198902/271‑1 (MQ=255)                                                                                                                gggCTATTTTTTACTGGTGGCGGTGGCAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTccc                                                                                                                                                                                                                             >  2:432515/1‑139 (MQ=255)                                                                                                                gggCTATTTTCTACTGGTGGCGGTGGCAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGgcg                                                                                                                                                                                                                                   >  1:719185/1‑133 (MQ=255)                                                                                                                    tATTTTTTTCTGGTGGCGGTGGCAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCGATGCGCAggg                                                                                 <  1:573123/275‑1 (MQ=255)                                                                                                                    tATTTTTTACTGGTGGCGGTGGCAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGAtt                                                                                                                                                                                                                         <  1:432522/139‑1 (MQ=255)                                                                                                                                gtggcggtggcAACCTGGGTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGctctc                                                                                                                                                                                                                  >  1:138260/1‑134 (MQ=255)                                                                                                                                                     gTACTGGCCATTTTTTGCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGTTCTCTGGGGACCCAACGCATGGGCAACTGGCGGAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCGATGCGCAGGGCAAAGTATTGTTCGATTCGGCAAATAAAGCCg                                                 <  1:130176/274‑1 (MQ=255)                                                                                                                                                           gCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCGCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTaa                                                                                                                              >  2:18871/1‑191 (MQ=255)                                                                                                                                                           gCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAata                                                                                                            >  2:82932/1‑209 (MQ=255)                                                                                                                                                           gCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAata                                                                                                            >  2:477752/1‑209 (MQ=255)                                                                                                                                                           gCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAata                                                                                                            >  1:33147/1‑209 (MQ=255)                                                                                                                                                            agcgttttaatgtgggtatcgacggtgcgatcgtaggtgtcctgcgcatcttcccatacgctatccatcagttgctggcggAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTACTCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTACCAAAGTGCGCAATGAATATCATGTCTATATAACCGATGCTCAAGGCCAAGTATTGTTCTATTCGGCAAATAAAACCGTTGGATAg                                         >  2:192245‑M2/82‑275 (MQ=255)                                                                                                                                                               tttttGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCGCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACaaa                                                                                                                          <  1:18871/191‑1 (MQ=255)                                                                                                                                                               tttttGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCAt                                                                                                        <  2:33147/209‑1 (MQ=255)                                                                                                                                                               tttttGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCAt                                                                                                        <  1:477759/209‑1 (MQ=255)                                                                                                                                                               tttttGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCAt                                                                                                        <  1:82933/209‑1 (MQ=255)                                                                                                                                                                     tCAAAGAAGTTAAACCGGGCGGGCGAACAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTATCTGGGCACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCCCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAata                                                                                                            >  1:415397/1‑199 (MQ=255)                                                                                                                                                                       gtgggtatcgacggtgcgatcgtaggtgtcctgcgcatcttcccatacgctatccatcagttgctggcggAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCGATGCGCAGGGCAAAGTATTGTTCGATTCGGCAAATAAAGCCGTTGGACAGGATTATTcgcg                              <  1:192248‑M2/205‑1 (MQ=255)                                                                                                                                                                          gaagTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGttt                                                                                                                                                                             >  1:597214/1‑129 (MQ=255)                                                                                                                                                                             gTTAAACCGGNGGTGCGAANAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCTTTAACAAAGTGCGCAATGAATATCATGTCTatat                                                                                                <  1:483526/203‑1 (MQ=255)                                                                                                                                                                              ttAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATc                                                                                                                                                                         <  2:597205/129‑1 (MQ=255)                                                                                                                                                                                    cGGGCGTGCGAAGAGCAACGGGGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCGCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCGATGCGCAGGGCAAAGTATTGTTCGATTCGGCAAATAAAGCCGTTGGACAGGATTATTCGCGCTGGAATGACGt                  <  1:236942/274‑1 (MQ=255)                                                                                                                                                                                           gtaggtgtcctgcgcatcttcccatacgctatccatcagttgctggcgggACCAGACGCGGCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGttt                                                                                                                                                                             >  2:285628‑M2/51‑112 (MQ=255)                                                                                                                                                                                            gtaggtgtcctgcgcatcttcccatacgctatccatcagttgctggcggAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCGATGCGCAGGGCAAAGTATTGTTCGATTCGGCAAATAAAGCCGTTGGACAGGATTATTCGCGCTGGAATGACGTCTGGCTAAc         >  1:575382‑M2/50‑275 (MQ=255)                                                                                                                                                                                               gtgtcctgcgcatcttcccatacgctatccatcagttgctggcgggACCAGACGCGGCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATc                                                                                                                                                                         <  1:285633‑M2/66‑1 (MQ=255)                                                                                                                                                                                                 agCAACTGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCACTGAATATCATGTCTATATGACCGATGCGAAGGGCACAGAATTGTTCGATTAGGCAAAAAAAGCCGTTGGACAGGATTATTCGAGCTGGAATGAAGTCTGGNTAACGGTgg    >  2:271876/1‑274 (MQ=255)                                                                                                                                                                                                 agCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAat                                                                                                                                            >  2:565932/1‑139 (MQ=255)                                                                                                                                                                                                  gCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCACCCGTATCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCGATGCGCAGGGCAAAGTATTGTTCGATTCGGCAAATAAAGCCGTTGGACAGGATTATTCGCGCTGGAATGACGTCTGGCTAACGTTGc    <  1:627790/274‑1 (MQ=255)                                                                                                                                                                                                    aattgAGGGGATGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCGATGCGCAGGGCAAAGTATTGTTCGATTCGGCAAATAAAGCCGTTGGACAGGATTATTCGCGCTGGAATGACGTCTGGCTAACGTTGCGt  <  1:271881/270‑1 (MQ=255)                                                                                                                                                                                                     aCGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCg                                                                                                                                        <  1:565941/139‑1 (MQ=255)                                                                                                                                                                                                      cGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGt                                                                                                                                                       >  2:495831/1‑123 (MQ=255)                                                                                                                                                                                                          ggggACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCTGTTACGCCGCTACGACATCGCCCGTTTcg                                                                                                                                                   <  1:495838/123‑1 (MQ=255)                                                                                                                                                                                                                gTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAatat                                                                                                                                          >  1:37272/1‑126 (MQ=255)                                                                                                                                                                                                                    aTCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGt                                                                                                                                      <  2:37272/126‑1 (MQ=255)                                                                                                                                                                                                                     tCGACACCGCAACGTTGCTAGCGGAGCTGGCGCGTCCCGATTTGctct                                                                                                                                                                                                                   >  1:585049/1‑48 (MQ=255)                                                                                                                                                                                                                       gACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTgg                                                                                                                                                                                        >  1:595291/1‑73 (MQ=255)                                                                                                                                                                                                                         cacCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTgg                                                                                                                                                                                                               <  2:585040/48‑1 (MQ=255)                                                                                                                                                                                                                           ccGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCa                                                                                                                                                                                    <  2:595282/73‑1 (MQ=255)                                                                                                                                                                                                                            cGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATAGCGGTGGCATTAACAAAGTGCGCAATGaa                                                                                                              >  2:50638/1‑142 (MQ=255)                                                                                                                                                                                                                                aCGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATc                                                                                                          <  1:50638/142‑1 (MQ=255)                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                         TGCGTGCCAAGCTGCGCGCCATCAACCCCGATCTTTCACCGATTAATACTCATCGCGGCATGGGATATAGCCTGAGGGGCCTGTAATGCGTATCGGCATGCGGTTGTTGCTGGGCTATTTTTTACTGGTGGCGGTGGCAGCCTGGTTCGTACTGGCCATTTTTGTCAAAGAAGTTAAACCGGGCGTGCGAAGAGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCGATGCGCAGGGCAAAGTATTGTTCGATTCGGCAAATAAAGCCGTTGGACAGGATTATTCGCGCTGGAATGACGTCTGGCTAACGTTGCGT  >  CP009273/4626428‑4626896

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.