mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4582489 = | 110 (2.860) | 4 (0.110) | 4/294 | NT | 3.4% | coding (1016/1656 nt) | tsr | methyl‑accepting chemotaxis protein I, serine sensor receptor |
| ? | CP009273 | 4584393 = | 121 (3.360) | coding (147/1362 nt) | yjjL | L‑galactonate transporter | |||||
| * | ? | CP009273 | = 4556694 | 105 (2.730) | 4 (0.110) | 4/294 | NT | 4.7% | coding (370/1281 nt) | yjiN | zinc‑type alcohol dehydrogenase‑like protein |
| ? | CP009273 | = 4557181 | 64 (1.780) | coding (1156/1233 nt) | mdtM | multidrug efflux system protein | |||||
| * | ? | CP009273 | = 4494322 | 120 (3.120) | 7 (0.190) | 6/298 | NT | 4.8% | coding (448/1218 nt) | yjhB | putative transporter |
| ? | CP009273 | = 4494428 | 164 (4.500) | coding (554/1218 nt) | yjhB | putative transporter | |||||
| * | ? | CP009273 | 4362664 = | 90 (2.340) | 4 (0.110) | 4/294 | NT | 4.8% | coding (39/354 nt) | yjeI | DUF4156 family lipoprotein |
| ? | CP009273 | 4362902 = | 76 (2.110) | coding (277/354 nt) | yjeI | DUF4156 family lipoprotein | |||||
| * | ? | CP009273 | = 4313976 | 108 (2.810) | 4 (0.110) | 4/294 | NT | 3.4% | coding (194/1017 nt) | phnD | phosphonate ABC transporter periplasmic binding protein |
| ? | CP009273 | = 4314069 | 123 (3.420) | coding (101/1017 nt) | phnD | phosphonate ABC transporter periplasmic binding protein | |||||
| * | ? | CP009273 | = 4300627 | 102 (2.650) | 4 (0.110) | 4/296 | NT | 3.8% | coding (171/1533 nt) | alsA | fused D‑allose transporter subunits of ABC superfamily: ATP‑binding components |
| ? | CP009273 | = 4300748 | 104 (2.870) | coding (50/1533 nt) | alsA | fused D‑allose transporter subunits of ABC superfamily: ATP‑binding components | |||||
| * | ? | CP009273 | = 4300545 | 110 (2.860) | 4 (0.110) | 4/294 | NT | 4.1% | coding (253/1533 nt) | alsA | fused D‑allose transporter subunits of ABC superfamily: ATP‑binding components |
| ? | CP009273 | = 4300843 | 84 (2.330) | noncoding (13/82 nt) | REP322 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP322 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | CP009273 | 4066308 = | 88 (2.290) | 4 (0.110) | 4/302 | NT | 4.6% | coding (624/897 nt) | yihU | gamma‑hydroxybutyrate dehydrogenase, NADH‑dependent |
| ? | CP009273 | 4066515 = | 81 (2.190) | coding (417/897 nt) | yihU | gamma‑hydroxybutyrate dehydrogenase, NADH‑dependent | |||||
| * | ? | CP009273 | 3651929 = | 172 (4.470) | 4 (0.100) | 4/314 | NT | 2.3% | coding (204/528 nt) | gadE | gad regulon transcriptional activator |
| ? | CP009273 | 4487998 = | NA (NA) | intergenic (+241/‑91) | intB/insC1 | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA | |||||