New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2209206	65 (1.620)	14 (0.360)	5/302	NT	19.4%	coding (71/108 nt)	yohO	putative membrane protein
	?	CP009273	= 2209278	53 (1.360)					coding (678/732 nt)	yehW	inner membrane putative ABC superfamily transporter permease

AATCCTTTCGTTAACATAAGGAGTGCATTATGCGCATAGCTAAAATTGGGGTCATCGCCCTGTTCCTGTTTATGGCGTTA‑‑GGCGGAATTGGTGGCG‑TCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/2209107‑2209206 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcatCGCAGACCGCCTGTTTGAAAGGCTGGTGCAGGCGCTTAGCCAGCACGCAAAATA  <  CP009273/2209278‑2209225                                                                                                                                                               AATCCTTTCGTTAACATAAGGAGTGCATTATGCGCATAGCTAAAATTGGGGTCATCGCCCTGTTCCTGTTTATGGCGTTACTGGTGGCACTGGCGGCGATCATCGCAGACCGCCTGTTTGAAAGGCTGGTGCAGGCGCTTAGCCAGCACGCAA      >  2:564986/1‑153     CTTTCGTTAACATAAGGAGTGCATTATGCGCATAGCTAAAATTGGGGTCATCGCCCTGTTCCTGTTTATGGCGTTACTGGTGGCACTGGCGGCGATCATCGCAGACCGCCTGTTTGAAAGGCTGATGCAGGCGCTTAGCCAGCACGCAAAATA  <  1:564998/153‑1                              agGCGCATAGCTAAAATTGGGGTCAGCGCCCTGTTCATGTTTATGGCGTTA‑‑GGCGGAATTGGTGGCG‑T                                                           <  2:280984/66‑1                                  GCATAGCTAAAATTGGGGTCATCGCCCTGTTCCTGTTTATGGCGTTA‑‑GGCGGAATTGGTGGCG‑TCATCGCAGACCGCCTGTTTGAAAGGCTGGTGCAGGCGCTTAGCCAGCACGCAA      >  1:218570/1‑117                                  GCATAGCTAAAATTGGGGTCATCGCCCTGTTCCTGTTTATGGCGTTA‑‑GGCGGAATTGGTGGCG‑TCATCGCAGACCGCCTGTTTGAAAGGCTGGTGCAGGCGCTTAGCCAGCACGCAA      >  1:417840/1‑117                                    ATAGCTAAAATTGGGGTCATCGCCCTGTTCCTGTTTATGGCGTTA‑‑GGCGGAATTGGTGGCG‑TCATCGCAGACCGCCTGTTTGAAAGGCTGGTGCAGGCGCTTAGCCAGCACGCAA      >  2:294240/1‑115                                    ATAGCTAAAATTGGGGTCATCGCCCTGTTCCTGTTTATGGCGTTA‑‑GGCGGAATTGGTGGCG‑TCATCGCAGACCGCCTGTTTGAAAGGCTGGTGCAGGCGCTTAGCCAGCACGCAA      >  2:55192/1‑115                                    ATAGCTAAAATTGGGGTCATCGCCCTGTTCCTGTTTATGGCGTTA‑‑GGCGGAATTGGTGGCG‑TCATCGCAGACAGCCTGCTTGAAAGGCTGGTGCAGGCGCTTAGCCAGCACGCAA      >  1:69984/1‑115                                      AGCTAAAATTGGGGTCATCGCCCTGTTCCTGTTTATGGCGTTA‑‑GGCGGAATTGGTGGCG‑TCATCGCAGACCGCCTGTTTGAAAGGCTGGTGCAGGCGCTTAGCCAGCACGCAAAATA  <  2:218568/117‑1                                      AGCTAAAATTGGGGTCATCGCCCTGTTCCTGTTTATGGCGTTA‑‑GGCGGAATTGGTGGCG‑TCATCGCAGACCGCCTGTTTGAAAGGCTGGTGCAGGCGCTTAGCCAGCACGCAAAATA  <  2:417833/117‑1                                      AGCTAAAATTGGGGTCATCGCCCTGTTCCTGTTTATGGCGTTA‑‑GGCGGAATTGGTGGCG‑TCA                                                         <  1:305828/62‑1                                        CTAAAATTGGTGTCATCGCCCTGTTCCTGTCTATGGCGGTA‑‑GGCGGTAATGGTGGCG‑TCAGCGCAGGCCGCCTGGTTGAAAGGCTGGTGCAGGCGCTTAGCCAGCAAGCAAAATc  <  2:69983/115‑2                                        CTAAAATTGGGGTCATCGCCCTGTTCCTGTTTATGGCGTTA‑‑GGCGGAATTGGTGGCG‑TCATCGCAGACCGCCTGTTTGAAAGGCTGGTGCAGGCGCTTAGCCAGCACGCAAAATA  <  1:294245/115‑1                                        CTAAAATTGGGGTCATCGCCCTGTTCCTGTTTATGGCGTTA‑‑GGCGGAATTGGTGGCG‑TCATCGCAGACCGCCTGTTTGAAAGGCTGGTGCAGGCGCTTAGCCAGCACGCAAAATA  <  1:55193/115‑1                                                                         TGGCGTTA‑‑GGCGGAATTGGTGGCG‑TCATCGCAGACCGCCTGTTTGAAAGGCTGGTGCAGGCGCTTAGCCAGCACGCAA      >  1:136297/1‑78                                                                             GTTA‑‑GGCGGAATTGGTGGCG‑TCATCGCAGACCGCCTGTTTGAAAGGCTGGTGCAGGCGCTTAGCCAGCACGCAAAATA  <  2:136296/78‑1                                                                                                                                                               AATCCTTTCGTTAACATAAGGAGTGCATTATGCGCATAGCTAAAATTGGGGTCATCGCCCTGTTCCTGTTTATGGCGTTA‑‑GGCGGAATTGGTGGCG‑TCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/2209107‑2209206 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcatCGCAGACCGCCTGTTTGAAAGGCTGGTGCAGGCGCTTAGCCAGCACGCAAAATA  <  CP009273/2209278‑2209225

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.