| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3791685 | 25 (0.620) | 4 (0.100) | 3/304 | NT | 6.4% | coding (988/1074 nt) | waaU | lipopolysaccharide core biosynthesis |
| ? | CP009273 | = 3791876 | 93 (2.360) | coding (797/1074 nt) | waaU | lipopolysaccharide core biosynthesis | |||||
TCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3791623‑3791685‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacCATTTGATGAGTTTATTTATACCGTTGCGTTGA < CP009273/3791876‑3791844 TCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATA > 2:395175/1‑62 AAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGAT < 1:130330/41‑1 AAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGAT < 1:569337/41‑1 GATATCTTTTACCGTATATGTTGGGGATACCATTTGATGAGTTTATTTATACCGTTGCG > 1:595703/1‑59 TCTTTTACCGTATATGTTGGGGATACCATTTGATGAGTTTATTTATACCGTTGCGTTGA < 2:595690/59‑1 TTTTACCGTATATGTTGGGGATACCATTTGATGAGTTTATTTATACCGTTGCG > 2:182175/1‑53 ACCGTATATGTTGGGGATACCATTTGATGAGTTTATTTATACCGTTGCGTTGA < 1:182177/53‑1 TCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3791623‑3791685‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacCATTTGATGAGTTTATTTATACCGTTGCGTTGA < CP009273/3791876‑3791844 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |