New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3791685	25 (0.620)	4 (0.100)	3/304	NT	6.4%	coding (988/1074 nt)	waaU	lipopolysaccharide core biosynthesis
	?	CP009273	= 3791876	93 (2.360)					coding (797/1074 nt)	waaU	lipopolysaccharide core biosynthesis

GTTGATATTAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCGATATGAACAAGAGCTGTATCAACAGAAATGACAAAATCACTATACTTGGTCAACGCAACGGTATAAATAAACTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAATCTTGCGGTAACCCGGTAAATATAATCCGATAATTTTCAA  >  CP009273/3791432‑3791954                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                                              gttgAGAATAACGATAGGAATTGTGGGGATGAGACGCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATAGTTATATACGATATAGTAGTCTTACTCGTCATTAATAATCGTAACAATACAATAAATTAAGAATACAAAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCAATACAACATAATCTCTTTACTGAATTCATTAAAGTTTCAGGATATATATCTTTTCGCGAATATGTTGGAGATCCTATTtatatatagatttaaat                                                                                                                                                                                                                                                          >  2:98938/1‑264 (MQ=255)                                                                                             tCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCGatat                                                                                                                                                              >  1:195039/1‑275 (MQ=255)                                                                                                 ctTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTaaa                                                                                                                                                                                                  >  1:287963/1‑235 (MQ=255)                                                                                                  ttACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACACGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTAtt                                                                                                                                                                                                                                                                           >  2:262605/1‑161 (MQ=255)                                                                                                     cTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGTGGACCAAATTAAATGCGAGGTATATTCCGGAGTACGTGAATTAGGGTAAAATGc                                                                                                                                                                                              <  2:287958/235‑1 (MQ=255)                                                                                                      tCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGta                                                                                                                                                                                                                                                                       <  1:262608/161‑1 (MQ=255)                                                                                                                                      taaGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTAtt                                                                                                                                                                                                                                                                           >  2:455128/1‑125 (MQ=255)                                                                                                                                          aaTAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGta                                                                                                                                                                                                                                                                       <  1:455135/125‑1 (MQ=255)                                                                                                                                                                      aCTCACTTCTTATCTATATAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCGATATGAACAAGAGCTGTATCAACAGAAATGACAAAATCACTATACTTGGTCAACGCAACGGTATAAATAAACtcatc                                                                                     <  1:98939/275‑1 (MQ=255)                                                                                                                                                                                      taCAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATCTTCCGGTGTACGTGAATTAGGGACAAATGCAAGCNTTTGTTTATGCTAAGCCGCAGCGATATGAACAAGAGCTGTATCAACAGAAATg                                                                                                                                    >  1:684739/1‑212 (MQ=255)                                                                                                                                                                                      taCAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGc                                                                                                                                                                   >  1:94875/1‑181 (MQ=255)                                                                                                                                                                                          aCTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCGata                                                                                                                                                               <  2:94874/181‑1 (MQ=255)                                                                                                                                                                                                tctcTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCGATATGAACAAGAGCTGTATCAACAGAAATGACAAAATCACTATACTTGGTCAACGCAACGGTATAAATAAACTCATCAAATGGTAGTGTATAGATTTCAAgta                                                           >  1:308719/1‑275 (MQ=255)                                                                                                                                                                                                    tttACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTAt                                                                                                                                                                                                                                                                            <  1:395182/62‑1 (MQ=255)                                                                                                                                                                                                    tttACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGta                                                                                                                                                                                                                                                                       <  1:274323/67‑1 (MQ=255)                                                                                                                                                                                                                                 gATATCTTTTACCGTATATGTTGGGGATACcatttgatgagtttatttataccgttgcg                                                                                                                                                                                                                                                  >  1:595703‑M1/1‑30 (MQ=255)                                                                                                                                                                                                                                     tCTTTTACCGTATATGTTGGGGATACcatttgatgagtttatttataccgttgcgttga                                                                                                                                                                                                                                              <  2:595690‑M1/59‑34 (MQ=255)                                                                                                                                                                                                                                       ttttACCGTATATGTTGGGGATACcatttgatgagtttatttataccgttgcg                                                                                                                                                                                                                                                  >  2:182175‑M1/1‑24 (MQ=255)                                                                                                                                                                                                                                         ttACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTc                                                                                                                                                                                                                         >  2:70696/1‑76 (MQ=255)                                                                                                                                                                                                                                           aCCGTATATGTTGGGGATACcatttgatgagtttatttataccgttgcgttga                                                                                                                                                                                                                                              <  1:182177‑M1/53‑34 (MQ=255)                                                                                                                                                                                                                                             cGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGa                                                                                                                                                                                                                     <  1:70697/76‑1 (MQ=255)                                                                                                                                                                                                                                               tataTGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAg                                                                                                                                                                                                                    >  1:12238/1‑75 (MQ=255)                                                                                                                                                                                                                                               tataTGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCa                                                                                                                                                                                             >  2:457806/1‑98 (MQ=255)                                                                                                                                                                                                                                               tataTGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGc                                                                                                                                                                         >  1:201512/1‑118 (MQ=255)                                                                                                                                                                                                                                                 tatGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCg                                                                                                                                                                                                                                   >  2:516652/1‑58 (MQ=255)                                                                                                                                                                                                                                                   tGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGTACg                                                                                                                                                                                                                <  2:12238/75‑1 (MQ=255)                                                                                                                                                                                                                                                   tGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCg                                                                                                                                                                                         <  1:457813/98‑1 (MQ=255)                                                                                                                                                                                                                                                   tGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCa                                                                                                                                                                     <  2:201510/118‑1 (MQ=255)                                                                                                                                                                                                                                                     ttGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAggg                                                                                                                                                                                                                               <  1:516661/58‑1 (MQ=255)                                                                                                                                                                                                                                                      tGGGGATACTATTTGTATAGATTTATGATGATTCgg                                                                                                                                                                                                                                                    >  1:552121/1‑36 (MQ=255)                                                                                                                                                                                                                                                       ggggATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGatat                                                                                                                                                                                                                           >  1:449435/1‑60 (MQ=255)                                                                                                                                                                                                                                                         ggATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCGATATGAACAAGAGCTGTATCAACAGAAATGACAAAATCACTATACTTGGTCAACGCAACGGTATAAATAAACTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAATCTTGCgg                                  >  1:62365/1‑243 (MQ=255)                                                                                                                                                                                                                                                         gaaTACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCGATATGAACAAGAGCTGTATCAACAGAAATGACAAAATCACTATACTTGGTCAACGCAACGGTATAAATAAACTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAATCTTGCGGTAACCCGGTAAATATAATCCGATAATTTTCaa  <  2:195037/273‑1 (MQ=255)                                                                                                                                                                                                                                                          gATACTATTTGTATAGATTTATGATGATTCGGGGAc                                                                                                                                                                                                                                                <  2:552110/36‑1 (MQ=255)                                                                                                                                                                                                                                                           aTACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCg                                                                                                                                                                                                                       <  2:449428/60‑1 (MQ=255)                                                                                                                                                                                                                                                             aCTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGcc                                                                                                                                                                        >  2:137479/1‑105 (MQ=255)                                                                                                                                                                                                                                                             aCTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCGATATGAACAAGAGCTGTATCAACAGAAATGACAAAATCACTATACTTGGTCAACGCAACGGTATAAATAAACTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAATCTTGCGGTAAc                              <  2:62364/243‑1 (MQ=255)                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                                              GTTGATATTAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCGATATGAACAAGAGCTGTATCAACAGAAATGACAAAATCACTATACTTGGTCAACGCAACGGTATAAATAAACTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAATCTTGCGGTAACCCGGTAAATATAATCCGATAATTTTCAA  >  CP009273/3791432‑3791954

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.