New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3921394	42 (1.050)	6 (0.160)	5/296	NT	18.2%	coding (880/993 nt)	asnA	asparagine synthetase A
	?	CP009273	= 3921515	14 (0.370)					coding (1449/1452 nt)	viaA	stimulator of RavA ATPase activity; von Willebrand factor domain protein

ACTGGAGCACCCCGTCAGAGCTGGGCCATGCGGGTCTGAACGGCGATATTCTGGTGTGGAACCCGGTACTGGAAGATGCGTTTGAGCTTTCCTCCATGGGGATCCGTGTAGATGCCGACACGCTGAAGCATCAACTGGCGCTGACCGGTGACGAAGATCGCCTGGAGCTGGAGTGGCATCAGGCGCTGCTGCGCGGTGAAATGCCGCAGACCATCGGCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3921173‑3921394 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggcgATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGCCATACTCCACACTGAACCTGGCCGATATGCGGCAGTTGCAGCAGCAGCATAGTCAAACGAGACTGGCCGATACCGCCGCCGATGGTCTGCGGCATTTCACCGCGCAGCAGC  <  CP009273/3921515‑3921357                                                                                                                                                                                                                                                                                                                                                                                               ACTGGAGCACACCGTCAGAGCTGGGCCATGCGGGTCTGAACGGCGATATTCTGGTGTGGAACCCGGTACTGGAAGATGCGTTTGAGCTTTCCTCCATGGGGATCCGTGTAGATGCCGACACGCTGAAGCATCAACTGGCGCTGACCGGTGACGAAGATCGCCTGGAGCTGGAGTGGCATCAGGCGCTGCTGCGCGAGGAAATGCCGCAGACCATCG                                                                                                                                                                       >  1:719796/1‑216                                                                                          TCCTCCATGGGGATCCGTGTAGATGCCGACACGCTGAAGCATCAACTGGCGCTGACCGGTGACGAAGATCGCCTGGAGCTGGAGTGGCATCAGGCGCTGCTGCGCGGTGAAATGCCGCAGACCATCG                                                                                                                                                                       >  1:60097/1‑127                                                                                              CCATGGGGATCCGGGTAGAGGCCGGCACGCTGAAGCATCAACTGGCGCTGACCGGTGACGAAGATCGGCTGGAGCTGGAGTGGCATCAGGCGCTGCTGCGCTGTGAAAGGCCGCAGACCATCGGCGG                                                                                                                                                                   <  2:60096/127‑1                                                                                                                                    CAACTGGCGCTGACCGGTGACGAAGATCGCCTGGAGCTGGAGTGGCATCAGGCGCTGCTGCGCGGTGAAATGCCGCAGACCATCGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGCCATACTCCACACTGAACCTGGCCGATATGCGGCAGTTGCAGCAG                                                                     >  1:298784/1‑183                                                                                                                                        TGGCGCTGACCGGTGACGAAGATCGCCTGGAGCTGGAGTGGCATCAGGCGCTGCTGCGCGGTGAAATGCCGCAGACCATCGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGCCATACTCCACACTGAACCTGGCCGATATGCGGCAGTTGCAGCAGCAGC                                                                 <  2:298779/183‑1                                                                                                                                           CGCTGACCGGTGACGAAGATCGCCTGGAGCTGGAGTGGCATCAGGCGCTGCTGCGCGGTGAAATGCCGCAGACCATCGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGC                                                                                                                               >  1:408621/1‑118                                                                                                                                               GACCGGTGACGAAGATCGCCTGGAGCTGGAGTGGCATCAGGCGCTGCTGCGCGGTGAAATGCCGCAGACCATCGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAAC                                                                                                                           <  2:408614/118‑1                                                                                                                                                                   TGGAGCTGGAGTGGCATCAGGCGCTGCTGCGCGGTGAAATGCCGCAGACCATCGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGC                                                                                                                               >  2:381725/1‑94                                                                                                                                                                       GCTGGAGTGGCATCAGGCGCTGCTGCGCGGTGAAATGCCGCAGACCATCGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAAC                                                                                                                           <  1:381732/94‑1                                                                                                                                                                                GCATCAGGCGCTGCTGCGCGGTGAAATGCCGCAGACCATCG                                                                                                                                                                       >  2:94852/1‑41                                                                                                                                                                                    CAGGCGCTGCTGCGCGGTGAAATGCCGCAGACCATCGGCGG                                                                                                                                                                   <  1:94853/41‑1                                                                                                                                                                                                                         GCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGCCAT                                                                                                              >  2:546133/1‑57                                                                                                                                                                                                                             CGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGCCATACTC                                                                                                          <  1:546144/57‑1                                                                                                                                                                                                                              GATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGCCATACTCCACACTGAACCTGGCCGATATGCGGCAGTTGCAGCAGCAGCATAGTCAAACGAGACTGGCCGATACCGCCGCCGATGGTCTGCGGCATTTCACCGCGCAGCAGC  >  2:679130/1‑160                                                                                                                                                                                                                                                                                                                                                                                               ACTGGAGCACCCCGTCAGAGCTGGGCCATGCGGGTCTGAACGGCGATATTCTGGTGTGGAACCCGGTACTGGAAGATGCGTTTGAGCTTTCCTCCATGGGGATCCGTGTAGATGCCGACACGCTGAAGCATCAACTGGCGCTGACCGGTGACGAAGATCGCCTGGAGCTGGAGTGGCATCAGGCGCTGCTGCGCGGTGAAATGCCGCAGACCATCGGCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3921173‑3921394 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggcgATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGCCATACTCCACACTGAACCTGGCCGATATGCGGCAGTTGCAGCAGCAGCATAGTCAAACGAGACTGGCCGATACCGCCGCCGATGGTCTGCGGCATTTCACCGCGCAGCAGC  <  CP009273/3921515‑3921357

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.