New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3921394	42 (1.050)	6 (0.160)	5/296	NT	18.2%	coding (880/993 nt)	asnA	asparagine synthetase A
	?	CP009273	= 3921515	14 (0.370)					coding (1449/1452 nt)	viaA	stimulator of RavA ATPase activity; von Willebrand factor domain protein

ATCCGTGTAGATGCCGACACGCTGAAGCATCAACTGGCGCTGACCGGTGACGAAGATCGCCTGGAGCTGGAGTGGCATCAGGCGCTGCTGCGCGGTGAAATGCCGCAGACCATCGGCGGCGGTATCGGCCAGTCTCGTTTGACTATGCTGCTGCTGCAACTGCCGCATATCGGCCAGGTTCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGATGCCGGGTTTGCCGTGTGCCGACATCGCCACGGCATGAAAGCGATGCTGATGTACCCGCTGCAGCTCTTTCACTTTACTCGTCACGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACCGCATCGGCATCAAACCATTCCCTGCTTTGCAAGCGTTCCATAATGGCGCGAAAACAACTGGCAAGATCGGTG  >  CP009273/3921274‑3921788                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                                  aTCCGTGTAGATGCCGACACGCTGAAGCATCAACTGGCGCTGACCGGTGACGAAGATCGCCTGGAGCTGGGGTGGCATCAGGCGCTGCTGCGCGGTGAAATGCCGCAGACCCTCGGCGGCGGTATCGGCCAGTCTCGTTTGACTATGATGCTGCTGCAACTGCCGCATATCGGCCAGGTTCAGTGGGGAGTATTGACAGATGCTGTTAGCGAGAGCATCCCTTCTCTGCTGTAATAATTTATCACCGCCAACGTCTGATAAGGAGGCTTCACAt                                                                                                                                                                                                                                                   >  1:425459/1‑274 (MQ=255)                                                                                    gctgctGCGCGGTGAAATGCCGCAGACCATCGGCGGCGGTATCGGCCAGTCTCGTTTGACTATGCTGCTGCTGCAACTGCCGCATATCGGCCAGGTTCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATc                                                                                                                                                                                                                                                                                  >  2:679130‑M2/1‑159 (MQ=255)                                                                                      tgctgcGCGGTGAAATGCCGCAGACCATCGGCGGCGGTATCGGCCAGTCTCGTTTGACTATGCTGCTGCTGCAACTGCCGCATATCGGCCAGGTTCAGTGTGGAGTATGGCCAGCGGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGc                                                                                                                                                                                                                                                     >  2:532255/1‑187 (MQ=255)                                                                                          gcgcGGTGAAATGCCGCAGACCATCGGCGGCGGTATCGGCCAGTCTCGTTTGACTATGCTGCTGCTGCAACTGCCGCATATCGGCCAGGTTCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATcc                                                                                                                                                                                                                                                 <  1:532264/187‑1 (MQ=255)                                                                                                                                                   gctgctgctgcAACTGCCGCATATCGGCCAGGTTCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATcgccgccgatggtctgcggcatttcaccgcgcagcagcgcctgatgccactccagctccaggcgatcttcgtcaccggtcagcgcca                                                                                                                                                                                            <  2:298779‑M2/183‑88 (MQ=255)                                                                                                                                                       ctgctgcAACTGCCGCATATCGGCCAGGTTCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATcgccgccgatggtctgcggcatttcaccgcgcagcagcgcctgatgccactccagctccaggcgatcttcgtcaccggtcagcgccagttg                                                                                                                                                                                        >  1:298784‑M2/1‑92 (MQ=255)                                                                                                                                                                                            gAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATcg                                                                                                                                                                                                                                                                                 <  1:546144‑M2/57‑3 (MQ=255)                                                                                                                                                                                             aGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGATGCCGGGTTTGCCGTGTGCCGACATCGCCACGGCATGAAAGCGAAGCTGATGTACCCACTGCAGCTCTTTCACTTTACTCGTCAAGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACCGCATCCGCATCAAACCATTc                                                      >  1:352366/1‑275 (MQ=255)                                                                                                                                                                                                aTGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATcgccgc                                                                                                                                                                                                                                                                             >  2:546133‑M2/1‑51 (MQ=255)                                                                                                                                                                                                aTGGCCAGCTGCTGTGCGCGAGAACGTCACTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGATGCCGGGTTTGCCGTGTGCCGACATCGCCACGGCATGAAAGCGATGCTGATGTACCCGCNGCAGCTCTTTCACTTTACTCGTCACGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACCGCATCGGCATCAAACCATTccc                                                    >  1:501031/1‑274 (MQ=255)                                                                                                                                                                                                           tagtgagggagagaGGCCCTCCCATGCTGTAAGAATTTATCGCCGCCAGCGTTTGAGCCGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCCAGAATGCGCATGATGCCGGGTTTGCCGTGTGCCGACATCGCCACGGCATGAAAGCGATGCTGGTGTACCCGCTGCAGCTCTTTCACTTTACTCGTCACGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAAGCACCACCGCATCGGCATCAAACCATTCCCTGCTTTGCAAg                                         <  2:501022/266‑1 (MQ=255)                                                                                                                                                                                                           ctgTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGATGCCGGGTTTGCCGTGTGCCGACATCGCCACGGCATGAAAGCGATGCTGATGTCACCGCTGCAGCTCTTTCACTTTACTCGTCACGTCGTCAGGCAACCGCTGAGCGATAACATCAGAAATAACCACCGCCTCGGCCTAAACCCCTCCCCTGCctttccac                                         >  2:93525/1‑269 (MQ=255)                                                                                                                                                                                                             tgtctcgAGTGCGTTCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGATGCCGGGTTTGCCGTGAGCCGACATCGCCACGGCATGAAAGCGATGCTGATGTACCCGCTGCAGCTCTTTCACTTTACTCGTCACGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACCGCATCGGCATCAAACCATTCCCTGCTTTGCAAGCg                                       <  1:643925/269‑1 (MQ=255)                                                                                                                                                                                                             gTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATcgccgccgatggtctgcggcatttcaccgcgcagcagcgcctgatgccactccagctccaggcgatcttcgtcaccggtc                                                                                                                                                                                                   <  2:408614‑M2/118‑81 (MQ=255)                                                                                                                                                                                                             gTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATcgccgccgatggtctgcggcatttcaccgcgcagcagcgcctgatgccactccagc                                                                                                                                                                                                                           <  1:381732‑M2/94‑57 (MQ=255)                                                                                                                                                                                                                 gcgAGAGCGTCCCTTCTCTGCTGTAATAATTTATcgccgccgatggtctgcggcatttcaccgcgcagcagcgcctgatgccactccagctccaggcgatcttcgtcaccggtcagcg                                                                                                                                                                                               >  1:408621‑M2/1‑34 (MQ=255)                                                                                                                                                                                                                 gcgAGAGCGTCCCTTCTCTGCTGTAATAATTTATcgccgccgatggtctgcggcatttcaccgcgcagcagcgcctgatgccactccagctcca                                                                                                                                                                                                                       >  2:381725‑M2/1‑34 (MQ=255)                                                                                                                                                                                                                          tCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGATGCCGGGTTTGCCGTGTGCCGACATCGCCACGGCATGAAAGCGATGCTGATGTACCCGCTGCAGCTCTTTCACTTTACTCGTCACGTCGTCACGCAACCGCTGAGCGATAAAATCAGAAATCACCACCGCATCGGAATCAAACCATTCCCTGCTTTGCCAGCTTCCCATAATTgct                          >  2:643911/1‑273 (MQ=255)                                                                                                                                                                                                                                  ctgctgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGATGCCGGGTTTGCCGTGTGCCGACATCGCCACGGCATGAAAGCGATGCTGATGTACCCGCTGCAGCTCTTTCACTTTACTCGTCACGTCGTCAGGCAACCg                                                                                                      >  2:494071/1‑190 (MQ=255)                                                                                                                                                                                                                                      tgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGATGCCGGGTTTGCCGTGTGCCGACATCGCCACGGCATGAAAGCGATGCTGATGTACCCGCTGCAGCTCTTTCACTTTACTCGTCACGTCGTCAGGCAACCGCTGa                                                                                                  <  1:494080/190‑1 (MQ=255)                                                                                                                                                                                                                                        taataaTTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGATGCCGGGTTTGCCGTGTGCCGACATc                                                                                                                                                                                >  2:657423/1‑110 (MQ=255)                                                                                                                                                                                                                                          ataatTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGATGCCGGGTTTGCCGTGTGCCGACATCGCCACgg                                                                                                                                                                         >  1:161172/1‑115 (MQ=255)                                                                                                                                                                                                                                            aatTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGATGCCGGGTTTGCCGTGTGCCGACATCGCCa                                                                                                                                                                            <  1:657437/110‑1 (MQ=255)                                                                                                                                                                                                                                              tttATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGATGCCGGGTTTGCCGTGTGCCGACATCGCCACGGCATg                                                                                                                                                                     <  2:161170/115‑1 (MQ=255)                                                                                                                                                                                                                                                tATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGata                                                                                                                                                                                                                             >  1:403368/1‑57 (MQ=255)                                                                                                                                                                                                                                                  tCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGATGCCGGGTTTGCCGTGTGCCGACATCGCCACGGCATGAAAGCGATGCTGATGTACCCGCTGCAGCTCTTTCACTTTACTCGTCACGTCGGCAGGCAACCGCTGAGCGATNAAATCAGAAATCACCACCGCATCGGCATCAAACCATTCCCTGCTTTGCAAGCGTTCCATAATGGCGCGAAAACAACTGGCAAGATCGGt   >  1:559440/1‑273 (MQ=255)                                                                                                                                                                                                                                                  tCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGATGCCGGGTTTGCCGTGCGCCTACATCGCCACGGCATGAAAGCGATGCTGATGTACCCGCTGCAGCTCTTTCACTTTACTCGTCACGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACCGCATCGGCATCAAACCATTCCCTGCTTTCCAAGCGTCCCATAATGGCGCGAAAACAACTGGCAAGATCGGtc  >  1:247146/1‑273 (MQ=255)                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                                  ATCCGTGTAGATGCCGACACGCTGAAGCATCAACTGGCGCTGACCGGTGACGAAGATCGCCTGGAGCTGGAGTGGCATCAGGCGCTGCTGCGCGGTGAAATGCCGCAGACCATCGGCGGCGGTATCGGCCAGTCTCGTTTGACTATGCTGCTGCTGCAACTGCCGCATATCGGCCAGGTTCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGATGCCGGGTTTGCCGTGTGCCGACATCGCCACGGCATGAAAGCGATGCTGATGTACCCGCTGCAGCTCTTTCACTTTACTCGTCACGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACCGCATCGGCATCAAACCATTCCCTGCTTTGCAAGCGTTCCATAATGGCGCGAAAACAACTGGCAAGATCGGTG  >  CP009273/3921274‑3921788

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.