New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 4125531	43 (1.070)	5 (0.130)	5/296	NT	10.6%	coding (1769/2181 nt)	katG	catalase‑peroxidase HPI, heme b‑containing
	?	CP009273	= 4125717	43 (1.120)					coding (1955/2181 nt)	katG	catalase‑peroxidase HPI, heme b‑containing

GCCGTTCGTGCTCTGCCTGTTCTGGAGAAAATCCAGAAAGAGTCTGGTAAAGCCTCGCTGGCGGATATCATAGTGCTGGCTGGTGTGGTTGGTGTTGAGAAAGCCGCAAGCGCCGCAGGTTTGAGCATTCATGTACCGTTTGCGCCGGGTCGCGTTGATGCGCGTCAGGATCAGACTGACATTGAGATGTTTGAGCTGCTGGAGCCAATTGCTGACGGTTTCCGTAACTATCGCGCTCGTCTGGACGTTTCCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/4125278‑4125531 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttccacTCGTAACGCATATCCAGCAAGTTCACGAAGAAGTCATTGCTCAATACGCCAACGCGGTCAGTGAAGACGCCGTTTTTGCTGCCATCGAAGTTGGCACCCAGTACACGCATGCCGCCCACCAGCGCAGTCATTTCCGGCGCGGTCAGCGTCAGTTGCTGTGCTTTGTCGATCAGCAGTGACTCGGTGGTGGAAACGTCCAGACGAGCGCGATAGTTACGGAAACCGTCAGCAATTGGCTCCAGCAGCTCAAACATCTCAATGTCAGTCTGATC  <  CP009273/4125717‑4125446                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GCCGTTCGTGCTCTGCCTGTTCTGGAGAAAATCCAGAAAGAGTCTGGTAAAGCCTCGCTGGCGGATATNATAGTGCTGGCTGGTGTGGATGGTGTTGAGAAAGCCGCAAGCGCCGCAGGTTTGAGCATTCATGTACCGTTTGCGCCGGGTCGCGTTGATGCGCGTCAGGATCAGACTGACATTGAGATGTTTGAGCTGCTGGAGCCAATTGCTGACGGTTTCCGTAACTATCGCGCTCGTCTGGACGTTTCC                                                                                                                                                                                                                                                                                    <  1:566607/252‑1                                                                                                                                                                                   ACATTGAGATGTTTGAGCTGCTGGAGCCAATTGCTGACGGTTTCCGTAACTATCGCGCTCGTCTGGACGTTTCCACTCGTAACGCATATCCAGC                                                                                                                                                                                                                                                                >  1:28545/1‑94                                                                                                                                                                                       TGAGATGTTTGAGCTGCTGGAGCCAATTGCTGACGGTTTCCGTAACTATCGCGCTCGTCTGGACGTTTCCACTCGTAACGCATATCCAGCAAGT                                                                                                                                                                                                                                                            <  2:28544/94‑1                                                                                                                                                                                                   GCTGCTGGAGCCAATTGCTGACGGTTTCCGTAACTATCGCGCTCGTCTGGACGTTTCCACTCGTAACGCATATCCAGCAAGTTCACGAAGAAGTCATTGCTCAATACGCCAACGCGGTCAGTGAAGACGCCGTTTTTGCTGCCATCGAAGTTGGCACCCAGTACACGCATGCCGCCCACCAGCGCAGTCATTTCCGGCGCGGTCAGCGTCAGTTGCTGTGCTTTGTCGATCAGCAG                                                                                                  <  1:107910/236‑1                                                                                                                                                                                                                     TGACGGTTTCCGTAACTATCGCGCTCGTCTGGACGTTTCCACTCGTAACGCATATCCAGCAA                                                                                                                                                                                                                                                              >  1:69505/1‑62                                                                                                                                                                                                                         GGTTTCCGTAACTATCGCGCTCGTCTGGACGTTTCCACTCGTAACGCATATCCAGCAAGTTC                                                                                                                                                                                                                                                          <  2:69504/62‑1                                                                                                                                                                                                                                                  cctcgaTTTCCACTCGGAACGCATAGCCAGCAAGTTCACGAAGTAGTCATTGCTCAATACGCCAACGCCGTCAGTGAAGACGCCGTTTTTGCTGCCATCGAAGTTGGCACCCAGTACACGCATGCCGCCCACCAGCGCAGTCATTTCCGGCGCGGTCAGCGTCAGTTGCTGTGCTTTGTCGATCAGCAGTGACTCGGTGGTGGAAACGTCCAGACGAGCGCGATAGTTACGGAAACCGTCAGCAATTGGCTCCAGCAGCTCAAACATCTCAAT              <  2:196143/267‑1                                                                                                                                                                                                                                                          TCCACTCGTAACGCATATCCAGCAAGTTCACGAAGAAGTCATTGCTCAATACGCCAACGC                                                                                                                                                                                                                           <  1:639610/60‑1                                                                                                                                                                                                                                                            CACTCGTAACGCATATCCAGCAAGTTCACGAAGAAGTCATTGCTCAATACGCCAACGCGGTCAGTGAAGACGCCGTTTTTGCTGCCATCGAAGTTGGCACCCAGTACACGCATGCCGCCCACCAGCGCAGTCATTTCCGGCGCGGTCAGCGTCAGTTGCTGTGCTTTGTCGATCAGCAGTGACTCGGTGGTGGAAACGTCCAGACGAGCGCGATAGTTACGGAAACCGTCAGCAATTGGCTCCAGCAGCTCAAACATCTCAATGTCAGTCTGATC  <  1:465863/275‑1                                                                                                                                                                                                                                                              CTCGTAACGCATATCCAGCAAGTTCACGAAGAAGTCATTGCTCAATACGCCAACGC                                                                                                                                                                                                                           >  2:637670/1‑56                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GCCGTTCGTGCTCTGCCTGTTCTGGAGAAAATCCAGAAAGAGTCTGGTAAAGCCTCGCTGGCGGATATCATAGTGCTGGCTGGTGTGGTTGGTGTTGAGAAAGCCGCAAGCGCCGCAGGTTTGAGCATTCATGTACCGTTTGCGCCGGGTCGCGTTGATGCGCGTCAGGATCAGACTGACATTGAGATGTTTGAGCTGCTGGAGCCAATTGCTGACGGTTTCCGTAACTATCGCGCTCGTCTGGACGTTTCCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/4125278‑4125531 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttccacTCGTAACGCATATCCAGCAAGTTCACGAAGAAGTCATTGCTCAATACGCCAACGCGGTCAGTGAAGACGCCGTTTTTGCTGCCATCGAAGTTGGCACCCAGTACACGCATGCCGCCCACCAGCGCAGTCATTTCCGGCGCGGTCAGCGTCAGTTGCTGTGCTTTGTCGATCAGCAGTGACTCGGTGGTGGAAACGTCCAGACGAGCGCGATAGTTACGGAAACCGTCAGCAATTGGCTCCAGCAGCTCAAACATCTCAATGTCAGTCTGATC  <  CP009273/4125717‑4125446

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.