New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	190667 =	24 (0.600)	3 (0.080)	3/292	NT	10.4%	coding (660/1197 nt)	dxr	1‑deoxy‑D‑xylulose 5‑phosphate reductoisomerase
	?	CP009273	190874 =	29 (0.770)					coding (867/1197 nt)	dxr	1‑deoxy‑D‑xylulose 5‑phosphate reductoisomerase

ATAATCCGGTGCGGCAAATGTCAACGCACTTAGTTTGCAAAAATCGAGCGGCTTCACGCCAGAGTTCACGCGATTCGGCCATGCCATGGTGTGGGCAATTGGCGTACGCATATCCGGTTCCCCCAGCTGCGCCAGAACACTGCCGTCCTGATAGCGCACCATTGAGTGAATCACTGACTGCGGGTGAATCAGCACTTCCATCTGGCTGGCGCTGGCGTTAAACAGCCAACGCGCTTCAATGTATTCCAGACCTTTGTTCATCATGGTAGCCGAATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/190943‑190667 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgaatcgCGTGAACTCTGGCGTGAAGCCGCTCGATTTTTGCAAACTAAGTGCGTTGACATTTGCCGCACCGGATTATGATCGTTATCCATGCCTGAAACTGGC  >  CP009273/190874‑190969                                                                                                                                                                                                                                                                                                                                                                                       ATAATCCGGTGCGGCAAATGTCAACGCACTTAGTTTGCAAAAATCGAGCGGCTTCACGCCAGAGTTCACGCGATTCGGCCATGCCATGGTGTGGGCAATTGGCGTACGCATATCCGGTTCCCCCAGCTGCGCCAGAACACTGCCGTCCTGATAGCGCACCATTGAGTGAATCACTGACTGCGGGTGAATCAGCACTTCCATCTGGCTGGCGCTGGCGTTAAACAGCCAACGCGCTTCAATGTATTCCAGACCTTTGTTCATCATGGTAGCCGAA                                                                                                     >  1:460853/1‑274                                                                                    aaaaGGTGAGGGAAATGGGCTTACGAATATCCGGTTCCCCCAGCTGCCCCAGAACACTGTCGTCCTGATAGCGCACCATTGAGTGAATCACTGACTGCGGGTGAATCAGCACTTCCATCTGGCTGGCGCTGGCGTTAAACATCCAACGCGCTTCAATGTATTCCAGACCTTTGTTCATCATGGTAGCCGAATCGCGTGAACTCTGGCGTGAAGCCGCTCGATTTTTGCAAACTAAGTGCGTTGACATTTGCCGCACCGGATTATGATCGTTATCC                 <  2:588990/271‑1                                                                                             GGGCAATTGGCGTACGCATATCCGGTTCCCCCAGCTGCGCCAGAACACTGCCGTCCTGATAGCGCACCATTGAGTGAATCACTGACTGCGGGTGAATCAGCACTTCCATCTGGCTGGCGCTGGCGTTAAACAGCCAACGCGCTTCAATGGATTCCAGACCTTTGTTCATCATGGTAGCCGAATCGCGTGAACTCTGGCGTGAAGCCGCTCGATTTTTGCAAACTAAGTGCGTTGACATTTGCCGCACCGGATTAGAATCGTTATCCATGCCTGA         >  1:589003/1‑274                                                                                                   TTGGCGTACGCATATCCGGTTCCCCCAGCTGCGCCAGAACACTGCCGTCCTGATAGCGCACCATTGAGTGAATCACTGACTGCGGGTGAATCAGCACTTCCATCTGGCTGGCGCTGGCGTTAAACAGCCAACGCGCTTCAATGTATTCCAGACCTTTGTTCATCATGGTAGCCGAATAGCGTGAACTCTGGCGTGAAGCCGCTCGATTTTTGCAAACTAAGTGCGTTGACATTTGCCGCACCGGATTATGATAGTTATCCATGCCTGAAACTGGC  >  1:369947/1‑275                                                                                                                          CCCAGCTGCGCCAGAACACTGCCGTCCTGATAGCGCACCATTGAGTGAATCACTGACTGCGGGTGAATCAGCACTTCCATCTGGCTGGCGCTGGCGTTAAACAGCCAACGCGCTTCAATGTATTCCAGACCTTTGTTCATCATGGTAGCCGAAT                                                                                                    >  2:200672/1‑154                                                                                                                                                                                                                                                                                                                                                                                       ATAATCCGGTGCGGCAAATGTCAACGCACTTAGTTTGCAAAAATCGAGCGGCTTCACGCCAGAGTTCACGCGATTCGGCCATGCCATGGTGTGGGCAATTGGCGTACGCATATCCGGTTCCCCCAGCTGCGCCAGAACACTGCCGTCCTGATAGCGCACCATTGAGTGAATCACTGACTGCGGGTGAATCAGCACTTCCATCTGGCTGGCGCTGGCGTTAAACAGCCAACGCGCTTCAATGTATTCCAGACCTTTGTTCATCATGGTAGCCGAATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/190943‑190667 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgaatcgCGTGAACTCTGGCGTGAAGCCGCTCGATTTTTGCAAACTAAGTGCGTTGACATTTGCCGCACCGGATTATGATCGTTATCCATGCCTGAAACTGGC  >  CP009273/190874‑190969

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.