New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	190667 =	24 (0.600)	3 (0.080)	3/292	NT	10.4%	coding (660/1197 nt)	dxr	1‑deoxy‑D‑xylulose 5‑phosphate reductoisomerase
	?	CP009273	190874 =	29 (0.770)					coding (867/1197 nt)	dxr	1‑deoxy‑D‑xylulose 5‑phosphate reductoisomerase

GCCGTAAAGCAGAGCAAAGCGCAATTGTTACCGGTCGATAGCGAACATAACGCCATTTTTCAGAGTTTACCGCAACCTATCCAGCATAATCTGGGATACGCTGACCTTGAGCAAAATGGCGTGGTGTCCATTTTACTTACCGGGTCTGGTGGCCCTTTCCGTGAGACGCCATTGCGCGATTTGGCAACAATGACGCCGGATCAAGCCTGCCGTCATCCGAACTGGTCGATGGGGCGTAAAATTTCTGTCGATTCGGCTACCATGATGAACAAAGGTCTGGAATACATTGAAGCGCGTTGGCTGTTTAACGCCAGCGCCAGCCAGATGGAAGTGCTGATTCACCCGCAGTCAGTGATTCACTCAATGGTGCGCTATCAGGACGGCAGTGTTCTGGCGCAGCTGGGGGAACCGGATATGCGTACGCCAATTGCCCACACCATGGCATGGCCGAATCGCGTGAACTCTGGCGTGAAGCCGCTCGATTTTTG  >  CP009273/190419‑190906                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                tccGTAAAGCAAAGCAAAGCGCAATTGTGTCCGGTCAATAGCGAACATAACGCCATTTTTCAGAGTTTACCGCAACCTATCCAGCATAATCTGGGATACGCTGACCTTGAGCAAANTGGCGTGGTGTTCATTTTACTTACCGGGTCTGGTGGCCCTTTCCGTGAGACGCCATTGCGCGATTTGGCAACAATGACGCCGGATCAAGCCTGCCGTCATCCGAACTGGTCGATGGGGCGTAAAATTTCTGTCGATTCGGCTACCATGATGAACAAAg                                                                                                                                                                                                                        <  1:685433/273‑1 (MQ=255)                                      aTAGCGAACATAACGCCATTTTTCAGAGTTTACCGCAACCTATCCAGCATAATCTGGGATACGCTGACCTTGAGCAAAATGGCGTGGTGTCCATTTTACTTACCGGGTCTGGTGGCCCTTTCCGTGAGACGCCATTGCGCGATTTGGCAACAATGACGCCGGATCAAGCCTGCCGTCATCCGAACTGGTCGATGGGGCGTAAAATTTCTGTCGATTCGGCTACCATGATGAACAAAGGTCTGGAATACATTGAAGCGCGTTGGCTGTTTAAcgcc                                                                                                                                                                                  >  1:195786/1‑275 (MQ=255)                                                                  tttACCGCAACCTATCCAGCATAATCTGGGATACGCTGACCTTGAGCAAAATGGCGTGGTGTCCATTTTACTTACCGGGTCTGGTGGCCCTTTCCGTGAGACGCCATTGCGCGATTTGGCAACAATGACGCCGGATCAAGCCTGCCGTCATCNGAACTGGTCGATGGGGCGTAAAATTTCTGTCGATTCGGCTACCATGATGAACAAAGGTCTGGAATACATTGAAGCGCGTTGGCTGTTTAACGCCAGCGCCAGCCAGATGGAAGTGCTGATTc                                                                                                                                                      >  1:616643/1‑275 (MQ=255)                                                                            ccTATCCAGCATAATCTGGGATACGCTGACCTTGAGCAAAATGGCGTGGTGTCCATTTTACTTACCGGGTCTGGTGGCCCTTTCCGTGAGACGCCATTGCGCGATTTGGCAACAATGACGCCGGATCAAGCCTGCCGTCATCCGAACTGGTCGATGGGGCGTAAAATTTCTGTCGATTCGGCTAc                                                                                                                                                                                                                                      >  1:547760/1‑185 (MQ=255)                                                                                tCCAGCATAATCTGGGATACGCTGACCTTGAGCAAAATGGCGTGGTGTCCATTTTACTTACCGGGTCTGGTGGCCCTTTCCGTGAGACGCCATTGCGCGATTTGGCAACAATGACGCCGGATCAAGCCTGCCGTCATCCGAACTGGTCGATGGGGCGTAAAATTTCTGTCGATTCGGCTACCatg                                                                                                                                                                                                                                  <  2:547749/185‑1 (MQ=255)                                                                                 ccAGCATAATCTGGGATACGCTGACCTTGAGCAAAATGGCGTGGTGTCCATTTTACTTACCGGGTCTGGTGGCCCTTTCCGTGAGACGCCATTGCGCGATTTGGCAACAATGACGCCGGATCAAGCCTGCCGTCATCCGAACTGGTCGATGGGGCGTAAAATTTCTGTCGATTCGGCTACCATGATGAACAAAGGTCTGGAATACAt                                                                                                                                                                                                           >  2:142965/1‑207 (MQ=255)                                                                                     cATAATCTGGGATACGCTGACCTTGAGCAAAATGGCGTGGTGTCCATTTTACTTACCGGGTCTGGTGGCCCTTTCCGTGAGACGCCATTGCGCGATTTGGCAACAATGACGCCGGATCAAGCCTGCCGTCATCCGAACTGGTCGATGGGGCGTAAAATTTCTGTCGATTCGGCTACCATGATGAACAAAGGTCTGGAATACATTGaa                                                                                                                                                                                                       <  1:142966/207‑1 (MQ=255)                                                                                        aaTCTGGGATACGCTGACCTTGAGCAAAATGGCGTGGTGTCCATTTTACTTACCGGGTCTGGTGGCCCTTTCCGTGAGACGCCATTGCGCGATTTGGCAACAATGACGCCGGATCAAGCCTGCCGTCATCCGAACTGGTCGATGGGGCGTAAAATTTCTGTCGATTCGGCTACCATGATGAACAAAGGTc                                                                                                                                                                                                                     >  2:582386/1‑190 (MQ=255)                                                                                            tGGGATACGCTGACCTTGAGCAAAATGGCGTGGTGTCCATTTTACTTACCGGGTCTGGTGGCCCTTTCCGTGAGACGCCATTGCGCGATTTGGCAACAATGACGCCGGATCAAGCCTGCCGTCATCCGAACTGGTCGATGGGGCGTAAAATTTCTGTCGATTCGGCTACCATGATGAACAAAGGTCTGGa                                                                                                                                                                                                                 <  1:582399/190‑1 (MQ=255)                                                                                             gggTTACGGTGAACTTGAGCAAAATGGCGTGGTGTCCATTTTACTTTCCTGGTCTGGTGGCCCTTTCCGGGAGACGCCATTGCGCGATTTGGCAACAATGACGCCGGATCAAGCCTGCCGTCATCCGAACTGGTCGATGGGGCGTAAAATTTCTGTCGATTCGGCTACCATGATGAACAAAGGTCTGGAATACATTGAAGCGCGTTGGCTGTTTAACGCCAGCGCCAGCCAGATGGAAGTGCTGATTCACCCGCAGTCAGTGATTCACTCAAt                                                                                                                             <  2:651555/273‑1 (MQ=255)                                                                                                             gAGCAAAATGGCGTGGTGTCCATTTTACTTACCGGGTCTGGTGGCCCTTTCCGTGAGACGCCATTGCGCGATTTGGCAACAATGACGCCGGATCAAGCCTGCCGTCATCCGAACTGGTCGATGGGGCGTAAAATTTCTGTCGATTCGGCTACCATGATGAACAAAGGTc                                                                                                                                                                                                                     >  2:21404/1‑169 (MQ=255)                                                                                                                 aaaaTGGCGTGGTGTCCATTTTACTTACCGGGTCTGGTGGCCCTTTCCGTGAGACGCCATTGCGCGATTTGGCAACAATGACGCCGGATCAAGCCTGCCGTCATCCGAACTGGTCGATGGGGCGTAAAATTTCTGTCGATTCGGCTACCATGATGAACAAAGGTCTGGa                                                                                                                                                                                                                 <  1:21405/169‑1 (MQ=255)                                                                                                                                    tttACTTACCGGGTCTGGTGGCCCTTTCCGTGAGACGCCATTGCGCGATTTGGCAACAATGACGCCGGATCAAGCCTGCCGTCATCCGAACTGGTCGATGGGGCGTAAAATTTCTGTCGATTCGGCTACCATGATGAACAAAGGTc                                                                                                                                                                                                                     >  1:234803/1‑146 (MQ=255)                                                                                                                                        cttacCGGGTCTGTTGGCCCTTTCCGTGAGACGCCATTGCGCGATTTGGCAACAATGACGCCGGATCAAGCCTGCCGTCATCCGAACTGGTCGATGGGGCGTAAAATTTCTGTCGATTCGGCTACCATGATGAACAAAGGTCTGGa                                                                                                                                                                                                                 <  2:234801/146‑1 (MQ=255)                                                                                                                                           acCGGGTCTGGTGGCCCTTTCCGTGAGACGCCATTGCGCGATTTGGCAACAATGACGCCGGATCAAGCCTGCCGTCATCCGAACTGGTCGATGGGGCGTAAAATTTCTGTCGATTCGGCTACCATGATGAACAAAGGTCGGGAATACATTGAAGCGCGTTGGCTGTTTAAcgcc                                                                                                                                                                                  >  1:628039/1‑174 (MQ=255)                                                                                                                                               ggTCTGGTGGCCCTTTCCGTGAGACGCCATTGCGCGATTTGGCAACAATGACGCCGGATCAAGCCTGCCGTCATCCGAACTGGTCGATGGGGCGTAAAATTTCTGTCGATTCGGCTACCATGATGAACAAAGGTCTGGAATACATTGAAGCGCGTTGGCTGTTTAAcgccagcg                                                                                                                                                                              <  2:628025/174‑1 (MQ=255)                                                                                                                                                gTCTGGTGGCACTTTCCGTGAGACGCCATTGCGCGATTTGGCAACAATGACGCCGGATCAAGCCTGCCGTCATCCGAAATGGTCGATGGGGCGTAAAATTTCTGTCGATTCGGCTACCATGATGAACAAAGGTCTGGAATACATTGAAGCGCGTTGGCTGTTTAAAGCCAGCGACAGCCAGATGGAAGTGCTGATACACCCGCAGTCAGTGATTCACTCAATGGTGCGCTCTCAGGACGGCAGTGTTCTGGCGCAGCTGGGGGAACCGGatata                                                                         >  1:741228/1‑273 (MQ=255)                                                                                                                                                         gccagtttcaggcatggataactatcataatccggtgcggcaaatgtcaacgcacttagtttgcaaaaatcgagcggcttcacgccagagttcacgCTATTCGGCTACCATGATGAACAAAGGTCTGGAATACATTGAAGCGCGTTGGCTGTTTAACGCCAGCGCCAGCCAGATGGAAGTGCTGATTCACCCGCAGTCAGTGATTCACTCAATGGTGCGCTATCAGGACGGCAGTGTTCTGGCGCAGCTGGGGGAACCGGATATGCGTACGCCaa                                                               >  1:369947‑M1/97‑275 (MQ=255)                                                                                                                                                                tcaggcatggataacgattctaatccggtgcggcaaatgtcaacgcacttagtttgcaaaaatcgagcggcttcacgccagagttcacgCGATTCGGCTACCATGATGAACAAAGGTCTGGAATCCATTGAAGCGCGTTGGCTGTTTAACGCCAGCGCCAGCCAGATGGAAGTGCTGATTCACCCGCAGTCAGTGATTCACTCAATGGTGCGCTATCAGGACGGCAGTGTTCTGGCGCAGCTGGGGGAACCGGATATGCGTACGCCAATTGccc                                                         >  1:589003‑M1/90‑274 (MQ=255)                                                                                                                                                                     gaCGCCATTGCGCGATTTGGCAACAATGACGCCGGATCAAGCCTGCCGTCATCCGAACTGGTCGATGGGGCGTAAAATTTCTGTCGATTCGGCTACCATGATGAACAAAGGTCTGGAATACATTGAAGCGCGTTGGCTGTTTAACGCCAGCGCCAGCCAGATGGAAGTGCTGATTCCACCGCAGTCAGTGATTCACTCAAAGGTGCGCTATCAGGACGGCAGTGTTCTNTCGCAGCTGGGGGAACCGTAGCTTCGTACCCCaaattaccccacc                                                    >  2:460846/1‑263 (MQ=255)                                                                                                                                                                        ggataacgatcataatccggtgcggcaaatgtcaacgcacttagtttgcaaaaatcgagcggcttcacgccagagttcacgCGATTCGGCTACCATGATGAACAAAGGTCTGGAATACATTGAAGCGCGTTGGATGTTTAACGCCAGCGCCAGCCAGATGGAAGTGCTGATTCACCCGCAGTCAGTGATTCACTCAATGGTGCGCTATCAGGACGACAGTGTTCTGGGGCAGCTGGGGGAACCGGATATTCGTAAGCCCATTTCCctcacctttt                                                <  2:588990‑M1/194‑5 (MQ=255)                                                                                                                                                                                                       gATCAAGCCTGCCGTCATCCGAACTGGTCGATGGGGCGTAAAATTTCTGTCGATTCGGCTACCATGATGAACAAAGGTCTGGAATACATTGAAGCGCGTTGGCTGTTTAACGCCAGCGCCAGCCAGATGGAAGTGCTGATTCACCCGCAGTCAGTGATTCACTCAATGGTGCGCTATCAGGACGGCAGTGTTCTGGCGCAGCTGGGGGAACCGGATATGCGTACGCCAATTGCCCACACCATGGCATGGCCGAATCGCGTGAACTCTGGCGTGaa                 >  1:221438/1‑275 (MQ=255)                                                                                                                                                                                                                  ccGTCATCCGAACTGGTCGATGGGGCGTAAAATTTCTGTCGATTCGGCTACCATGATGAACAAAGGTCTGGAATACATTGAAGCGCGTTGGCTGTTTAACGCCAGCGCCAGCCAGATGGAAGTGCTGATTCACCCGCAGTCAGTGATTCACTCAATGGTTCGCTATCAGGACGGCAGTGTTCTGGCGCAGCTGGGGGAACCGGATATGCGTACGCCAATTGCCCACCCCATGGCATGGCCGAATCGCGTGACCTCTGGCGTCAAGCCGccccctt      >  2:652832/1‑269 (MQ=255)                                                                                                                                                                                                                       attcGAACTTGTCGAGGGGGCGTAAAATTTCTGCTGATTCGGCTACCATGATGAACAAAGGTCTGGAATACATTGAAGCGCGTTGGCTGTTTAACGCCAGCGCCAGCCAGATGGAAGTGCTGATTCACCCGCAGTCAGTGATTCACTCAATGGTGCGCTATCAGGACGGCAGTGTTCTGGCGCAGCTGGGGGAACCGGATATGCGTACGCCAATTGCCCACACCATGGCATGGCCGAATCGCGTGAACTCTGGCGTGAAGCCGCTCGATTTTTg  <  2:195784/271‑1 (MQ=255)                                                                                                                                                                                                                        tCCGAACTGGTCGATGGGGCGTAAAATTTCTGTCGATTCGGCTCCCAGGATGACCAAAGGTCTGTAATACATTTAAGCGCGTTGGCTGTTTAACGCCAGCGCCAGCCAGATGGAAGTGCt                                                                                                                                                           >  1:697012/1‑120 (MQ=255)                                                                                                                                                                                                                            aaCTGGTCGATGGGGCGTAAAATTTCTGTCGATTCGGCTACCATGATGAACAAAGGTCTGGAATACTTTGAAGCGCGTTGGCTGTTTAACGCCCGCGCCAGCCAGATGTAAGTGCTGAtt                                                                                                                                                       <  2:696998/120‑1 (MQ=255)                                                                                                                                                                                                                                 gTCGATGGGGCGTAACATTTCTGTCGATACGGCTACCATGATGAACAAAGGTCTGGAATACATTGAAGCGCGTTGGCTGTTTAACGCCAGCGCCAGCCAGATGGAAGTGCTGATTCACCCGCAGTCAGTGATTCACTCAATGGTGCGCTATCAGGACGGCAGTGTTCTGGCGCAGCTGGGGGANCCGGATATGCGTACGCCAATTGCCCACACCATGGCATGGCCGCATCGCGTGa                              >  1:505782/1‑236 (MQ=255)                                                                                                                                                                                                                                                       gTCGATTCGGCTACCATGATGAACAAAGGTCTGGAATACATTGAAGCGCGTTGGCTGTTTAACGCCAGCGCCAGCCAGATGGAAGTGCTGATTCACCCGCAGTCAGTGATTCACTCAATGGTGCGCTATCAGGACGGCAGTGTTCTGGCGCAGc                                                                                          >  1:200674/1‑154 (MQ=255)                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                GCCGTAAAGCAGAGCAAAGCGCAATTGTTACCGGTCGATAGCGAACATAACGCCATTTTTCAGAGTTTACCGCAACCTATCCAGCATAATCTGGGATACGCTGACCTTGAGCAAAATGGCGTGGTGTCCATTTTACTTACCGGGTCTGGTGGCCCTTTCCGTGAGACGCCATTGCGCGATTTGGCAACAATGACGCCGGATCAAGCCTGCCGTCATCCGAACTGGTCGATGGGGCGTAAAATTTCTGTCGATTCGGCTACCATGATGAACAAAGGTCTGGAATACATTGAAGCGCGTTGGCTGTTTAACGCCAGCGCCAGCCAGATGGAAGTGCTGATTCACCCGCAGTCAGTGATTCACTCAATGGTGCGCTATCAGGACGGCAGTGTTCTGGCGCAGCTGGGGGAACCGGATATGCGTACGCCAATTGCCCACACCATGGCATGGCCGAATCGCGTGAACTCTGGCGTGAAGCCGCTCGATTTTTG  >  CP009273/190419‑190906

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.