New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	190667 =	24 (0.600)	3 (0.080)	3/292	NT	10.4%	coding (660/1197 nt)	dxr	1‑deoxy‑D‑xylulose 5‑phosphate reductoisomerase
	?	CP009273	190874 =	29 (0.770)					coding (867/1197 nt)	dxr	1‑deoxy‑D‑xylulose 5‑phosphate reductoisomerase

GATCAAGCCTGCCGTCATCCGAACTGGTCGATGGGGCGTAAAATTTCTGTCGATTCGGCTACCATGATGAACAAAGGTCTGGAATACATTGAAGCGCGTTGGCTGTTTAACGCCAGCGCCAGCCAGATGGAAGTGCTGATTCACCCGCAGTCAGTGATTCACTCAATGGTGCGCTATCAGGACGGCAGTGTTCTGGCGCAGCTGGGGGAACCGGATATGCGTACGCCAATTGCCCACACCATGGCATGGCCGAATCGCGTGAACTCTGGCGTGAAGCCGCTCGATTTTTGCAAACTAAGTGCGTTGACATTTGCCGCACCGGATTATGATCGTTATCCATGCCTGAAACTGGCGATGGAGGCGTTCGAACAAGGCCAGGCAGCGACGACAGCATTGAATGCCGCAAACGAAATCACCGTTGCTGCTTTTCTTGCGCAACAAATCCGCTTTACGGATATCGCTGCGTTGAATTTATCCGTACTGGAAAAAATGGATATGCGCGAACCACAATGTGTGGACGAT  >  CP009273/190617‑191138                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                         gATCAAGCCTGCCGTCATCCGAACTGGTCGATGGGGCGTAAAATTTCTGTCGATTCGGCTACCATGATGAACAAAGGTCTGGAATACATTGAAGCGCGTTGGCTGTTTAACGCCAGCGCCAGCCAGATGGAAGTGCTGATTCACCCGCAGTCAGTGATTCACTCAATGGTGCGCTATCAGGACGGCAGTGTTCTGGCGCAGCTGGGGGAACCGGATATGCGTACGCCAATTGCCCACACCATGGCATGGCCGAATCGCGTGAACTCTGGCGTGaa                                                                                                                                                                                                                                                         >  1:221438/1‑275 (MQ=255)            ccGTCATCCGAACTGGTCGATGGGGCGTAAAATTTCTGTCGATTCGGCTACCATGATGAACAAAGGTCTGGAATACATTGAAGCGCGTTGGCTGTTTAACGCCAGCGCCAGCCAGATGGAAGTGCTGATTCACCCGCAGTCAGTGATTCACTCAATGGTTCGCTATCAGGACGGCAGTGTTCTGGCGCAGCTGGGGGAACCGGATATGCGTACGCCAATTGCCCACCCCATGGCATGGCCGAATCGCGTGACCTCTGGCGTCAAGCCGccccctt                                                                                                                                                                                                                                              >  2:652832/1‑269 (MQ=255)                 attcGAACTTGTCGAGGGGGCGTAAAATTTCTGCTGATTCGGCTACCATGATGAACAAAGGTCTGGAATACATTGAAGCGCGTTGGCTGTTTAACGCCAGCGCCAGCCAGATGGAAGTGCTGATTCACCCGCAGTCAGTGATTCACTCAATGGTGCGCTATCAGGACGGCAGTGTTCTGGCGCAGCTGGGGGAACCGGATATGCGTACGCCAATTGCCCACACCATGGCATGGCCGAATCGCGTGAACTCTGGCGTGAAGCCGCTCGATTTTTg                                                                                                                                                                                                                                          <  2:195784/271‑1 (MQ=255)                           gTCGATGGGGCGTAACATTTCTGTCGATACGGCTACCATGATGAACAAAGGTCTGGAATACATTGAAGCGCGTTGGCTGTTTAACGCCAGCGCCAGCCAGATGGAAGTGCTGATTCACCCGCAGTCAGTGATTCACTCAATGGTGCGCTATCAGGACGGCAGTGTTCTGGCGCAGCTGGGGGANCCGGATATGCGTACGCCAATTGCCCACACCATGGCATGGCCGCATCGCGTGa                                                                                                                                                                                                                                                                      >  1:505782/1‑236 (MQ=255)                                                      TTCGGCTACCATGATGAACAAAGGTCTGGAATACATTGAAGCGCGTTGGCTGTTTAACGCCAGCGCCAGCCAGATGGAAGTGCTGATTCACCCGCAGTCAGTGATTCACTCAATGGTGCGCTATCAGGACGGCAGTGTTCTGGCGCAGCTGGGGGAACCGGATATGCGTACGCCAATTGCCCACACCATGGCATGGCCGAATCGCGTGAACTCTGGCGTGAAGCCGCTCGATTTTTGCAAACTAAGTGCGTTGACATTTGCCGCACCGGATTAt                                                                                                                                                                                                     >  1:460853‑M1/1‑274 (MQ=255)                                                                aaaaggtgagggaaatgggcttacgaatatccggttcccccagctgccccagaacactgtcgtcctgatagcgcaccattgagtgaatcactgactgcgggtgaatcagcacttccatctggctggcgctggcgttaaacatccaacgcgcttcaatgtattccagacctttgttcatcatggtagccgaatcgCGTGAACTCTGGCGTGAAGCCGCTCGATTTTTGCAAACTAAGTGCGTTGACATTTGCCGCACCGGATTATGATCGTTATcc                                                                                                                                                                                          <  2:588990‑M2/81‑1 (MQ=255)                                                                         gggcaattggcgtacgcatatccggttcccccagctgcgccagaacactgccgtcctgatagcgcaccattgagtgaatcactgactgcgggtgaatcagcacttccatctggctggcgctggcgttaaacagccaacgcgcttcaatggattccagacctttgttcatcatggtagccgaatcgCGTGAACTCTGGCGTGAAGCCGCTCGATTTTTGCAAACTAAGTGCGTTGACATTTGCCGCACCGGATTAGAATCGTTATCCATGCCTGa                                                                                                                                                                                  >  1:589003‑M2/186‑274 (MQ=255)                                                                               ttggcgtacgcatatccggttcccccagctgcgccagaacactgccgtcctgatagcgcaccattgagtgaatcactgactgcgggtgaatcagcacttccatctggctggcgctggcgttaaacagccaacgcgcttcaatgtattccagacctttgttcatcatggtagccgaatagCGTGAACTCTGGCGTGAAGCCGCTCGATTTTTGCAAACTAAGTGCGTTGACATTTGCCGCACCGGATTATGATAGTTATCCATGCCTGAAACTGGc                                                                                                                                                                           >  1:369947‑M2/180‑275 (MQ=255)                                                                                       cATTGAAGCGCGTTGGCTGTTTAACGCCAGCGCCAGCCAGATGGAAGTGCTGATTCACCCGCAGTCAGTGATTCACTCAATGGTGCGCTATCAGGACGGCAGTGTTCTGGCGCAGCTGGGGGAACCGGATATGCGTACGCCAATTGCCCACACCATGGCATGGCCGAATCGCGTGAACTCTGGCGTGAAGCCGCTCGATTTTTGCAAACTAAGTGCGTTGACATTTGCCGCACCGGATTATGATCGTTATCCATTCCTGAAACTGGCAATGGAg                                                                                                                                                                    >  1:151636/1‑274 (MQ=255)                                                                                            aaGCGCGTTGGCTGTTTAACGCCAGCGCCAGCCAGATGGAAGTGCTGATTCACCCGCAGTCAGTGATTCACTCAATGGTGCGCTATCAGGACGGCAGTGTTCTGGCGCAGCTGGGGGAACCGGATATGCGTACGCCAATTGCCCACACCATGGCATGGCCGAATCGCGTGAACTCTGGCGTGAAGCCGCTCGATTTTTGCAAACTAAGTGCGTTGACATTTGCCGCACCGGATTATGATCGt                                                                                                                                                                                               >  1:7950/1‑242 (MQ=255)                                                                                                gcgTTGGCTGTTTAACGCCAGCGCCAGCCAGATGGAAGTGCTGATTCACCCGCAGTCAGTGATTCACTCACTGGTGAGCTATCAGGACGGCAGTGTTCTGGCGCAGCTGGGGGAACCGGATATGCGTACGCCAATTGCCCACACCATGGCATGGCCGAATCGCGTGAACTCTGGCGTGAAGCCGCTCGATTTTTGCAAACTAAGTGCGTTGACATTTGCCGCa                                                                                                                                                                                                              <  1:660622/223‑1 (MQ=255)                                                                                                gcgTTGGCTGTTTAACGCCAGCGCCAGCCAGATGGAAGTGCTGATTCACCCGCAGTCAGTGATTCACTCAATGGTGCGCTATCAGGACGGCAGTGTTCTGGCGCAGCTGGGGGAACCGGATATGCGTACGCCAATTGCCCACACCATGGCATGGCCGAATCGCGTGAACTCTGGCGTGAAGCCGCTCGATTTTTGCAAACTAAGTGCGTTGACATTTGCCGCACCGGATTATGATCGTTATc                                                                                                                                                                                           <  2:7950/242‑1 (MQ=255)                                                                                                    tGGGTGTTTAAAGCCCGCGCCACCCGGCTGGAATTGCTGATTCACCCTCCGTCCGTGATTCACTCAAGGGTGCGCTATCAGGACGGCAGTGTTCTGGCGCAGCGGGGGGAACCGGATATGCGTACGCCAATTGCCCACACCATGGCATGGCCGAATCGCGTGAACTCTGGCGTGAAGCCGCTCGATTTTTGCAAACTAAGTGCGTTGACATTTGCCGCACCGGATTATGATCGTTATCCATGCCTGAAACTGGCGATGGAGGCGTTCGAACAAgg                                                                                                                                                      <  2:221436/275‑1 (MQ=255)                                                                                                                        cagccagATGGAAGTGCTGATTCACCCGCAGTCAGTGATTCACTCAATGGTGCGCTATCAGGACGGCAGTGTTCTGGCGCAGCTGGGGGAACCGGATATGCGTACGCCAATTGCCCACACCATGGCATGGCCGAATCGCGTGAACTCTGGCGTGAAGCCGCTCGATTTTTGCAAACTAAGTGCGTTGACATTTGCCGCa                                                                                                                                                                                                              <  1:158916/199‑1 (MQ=255)                                                                                                                                   aaGTGCTGATTCACCCGCAGTCAGTGATTCACTCAATGGTGCGCTATCAGGACGGCAGTGTTCTGGCGCAGCTGGGGGAACCGGATATGCGTACGCCAATTGCCCACACCATGGCATGGCCGAATcgc                                                                                                                                                                                                                                                                          <  1:559163/128‑1 (MQ=255)                                                                                                                                          gtttCCCCCGCAGGCAGTGTTTCGCTCAATGTTGCGCTCGCAGGACGGCAGTGTTCTGGCGCGGCTGGGGGAACCGGATATGCGTACGCCAATTGCCCACACCATGGCATGGCCGAATCGCATGAACTCTGGCGTGACGCCGCTCGATTTTTGCAAACTAAGTGCGTTGACATTTGCCGCACCGGATTATGATCGTTATCCATGCCTGAAACTGGCGATGGAGGCGTTCGAACAAGGCCAGGCAGCGACGACAGCATTGAATGCCGCAAACGaa                                                                                                                 <  2:616630/272‑1 (MQ=255)                                                                                                                                                                   tCAATGGTGCGCTATCAGGACGGCAGTGTTCTGGCGCAGCTGGGGGAACCGGATATGCGTACGCCAATTGCCCACACCATGGCATGGCCGAATCGCGTGAACTCTGGCGTGAAGCCGCTCGATTTTTGCAAACTAAGTGCGTTGACATTTGc                                                                                                                                                                                                                  >  2:38309/1‑152 (MQ=255)                                                                                                                                                                     aaTGGTGCGCTATCAGGACGGCAGTGTTCTGGCGCAGCTGGGGGAACCGGATATGCGTACGCCAATTGCCCACACCATGGCATGGCCGAATCGCGTGAACTCTGGCGTGAAGCCGCTCGATTTTTGCAAACTAAGTGCGTTGACATTTGCCGCACCGGATTATGATCGTTATCCATGCCTGAAACTGGCGATGGAGGCGTTCGAACAAGGCCAGGCAGCGACGACAGCATTGAATGCCGCAAACGAAATCACCGTTGCTGCTTTTCTTGCGccac                                                                                     >  1:350852/1‑275 (MQ=255)                                                                                                                                                                       tGGTGCGCTATCAGGACGGCAGTGTTCTGGCGCAGCTGGGGGAACCGGATATGCGTACGCCAATTGCCCACACCATGGCATGGCCGAATCGCGTGAACTCTGGCGTGAAGCCGCTCGATTTTTGCAAACTAAGTGCGTTGACATTTGCCGCa                                                                                                                                                                                                              <  1:38310/152‑1 (MQ=255)                                                                                                                                                                             gcTATCAGGACGGCAGTGTTCTGGCGCAGCTGGGGGAACCGGATATGCGTACGCCAATTGCCCACACCATGGCATGGCCGAATCGCGTGAACTCTGGCGTGAAGCCGCTCGATTTTTGCAAACTAAGTGCGTTGACATTTGcc                                                                                                                                                                                                                 >  2:391085/1‑143 (MQ=255)                                                                                                                                                                               tATCAGGACGGCAGTGTTCTGGCGCAGCTGGGGGAACCGGATATGCGTACGCCAATTGCACACACCATGGCATGGCCGAATCGCGTGAACTCTGGCg                                                                                                                                                                                                                                                             >  2:19870/1‑97 (MQ=255)                                                                                                                                                                                 tCAGGACGGCAGTGTTCTGGCGCAGCTGGGGGAACCGGATATGCGTACGCCAATTGCCCACACCATGGCATGGCCGAATCGCGTGAACTCTGGCGTGAAGCCGCTCGATTTTTGCAAACTAAGTGCGTTGACATTTGCCGCAc                                                                                                                                                                                                             <  1:391092/143‑1 (MQ=255)                                                                                                                                                                                   aGGACGGCAGTGTTCTGGCGCAGCTGGGGGAACCGGATATGCGTACGCCAATTGCCCACACCATGGCATGGCCGAATCGCGTGAACTCTGGCGTGaa                                                                                                                                                                                                                                                         <  1:19871/97‑1 (MQ=255)                                                                                                                                                                                                  tGGCGCAGCTGGGGGAACCGGATATGCGTACGCCAATTGCCCACACCATGGCATGGCCGAATCGCGTGAACTCTGGCGTGAAGCCGCTCGATTTTTGCAAACTAAGTGCGTTGACATTTGCCGCACCGGATTATGATCGTTATCCATGCCTGAAACTGGCGATGGAGGCGTTCGAACAAGGCCAGGCAGCGACGACAGCATTGAATGCCGCAAACGAAATCACCGTTGCTGCTTTTCTTGCGCAACAAATCCGCTTTACGAATATCGCTGCGtta                                                        >  1:123395/1‑274 (MQ=255)                                                                                                                                                                                                         gCTGGGGGAACCGGATATGCGTACGCCAATTGCCCACACCATGGCATGGCCGAATCGCGTGAACTCTGGCGTGAAGCCGCTCGATTTTTGCAAACTAAGTGCGTTGACATTTGCCGCACCGGATTATGATCGTTATCCATGCCTGAAACTGGCGATGGAGGCGTTCGAACAAGGCCAGGCAGCGACGACAGCATTGAATGCCGCAAACGAAATCACCGTTGCTGCTTTTCTTGCGcaac                                                                                     >  2:149734/1‑239 (MQ=255)                                                                                                                                                                                                             ggggAACCGGATATGCGTACGCCAATTGCCCACACCATGGCATGGCCGAATCGCGTGAACTCTGGCGTGAAGCCGCTCGATTTTTGCAAACTAAGTGCGTTGACATTTGCCGCACCGGATTATGATCGTTATCCATGCCTGAAACTGGCGATGGAGGCGTTCGAACAAGGCCAGGCAGCGACGACAGCATTGAATGCCGCAAACGAAATCACCGTTGCTGCTTTTCTTGCGCAACAAAt                                                                                 <  1:149735/239‑1 (MQ=255)                                                                                                                                                                                                                       atatGCGTACGCCAATTGCCCACACCATGGCATGGCCGAATCGCGTGAACTCTGGCGTGAAGCCGCTCGATTTTTGCAAACTAAGTGCGTTGACATTTGc                                                                                                                                                                                                                  >  2:546731/1‑100 (MQ=255)                                                                                                                                                                                                                           gCGTACGCCAATTGCCCACACCATGGCATGGCCGAATCGCGTGAACTCTGGCGTGAAGCCGCTCGATTTTTGCAAACTAAGTGCGTTGACATTTGCCGCa                                                                                                                                                                                                              <  1:546742/100‑1 (MQ=255)                                                                                                                                                                                                                                 gCCAATTGCCCACACCATGGCATGGCCGAATCGCGTGAACTCTGGCGTGAAGCCGCTCGATTTTTGCAAACTAAGTGCGTTGACATTTGCCGCAc                                                                                                                                                                                                             >  2:720849/1‑95 (MQ=255)                                                                                                                                                                                                                                   cAATTGCCCACACCATGGCATGGCCGAATCGCGTGAACTCTGGCGTGAAGCCGCTCGATTTTTGCAAACTAAGTGCGTTGCCATTTGCCGCACCGGATTATGATCGTTATCCATGCCTGAAACTGGCGATGGAGGCGTTCGAACAAGGCCAGGCAGCGACGACAGCATTGAATGCCGCAAACGAAATCACCGTTGCTGCTTTTCTTGCGCAACAAATCCGCTTTACGGATATCGCTGCGTTGAATTTATCCGTACTGGAAAAAATGGATATgcgc                       <  1:360282/275‑1 (MQ=255)                                                                                                                                                                                                                                     aTTGCCCACATCATGGCATGGCCGAATCGCGTTAACTCTGGCGTGAAGCCGCTCGATTTTTGCAAACTAAGTGAGTTGACANTTGCCGCANCGGATTATGATCCTTATCCATGCCTGAAACTGGCGATGGAGGCGTTCGAACAAGGCCAGGCAGCGACGACAGCATTGAATGCCGCAAACGAAATCACCGTTGCTGCTTTTCTTGCGCAACAAATCCGCTTTACGGATATCGCTGCGTTGAATTTATACGTACTGGAAAAAATGGATATGcgcg                      <  1:480382/274‑1 (MQ=255)                                                                                                                                                                                                                                     aTTGCCCACACCATGGCATGGCCGAATCGCGTGAACTCTGGCGTGAAGCCGCTCGATTTTTGCAAACTAAGTGCGTTGACATTTCCCGCACCGGa                                                                                                                                                                                                         <  1:720863/95‑1 (MQ=255)                                                                                                                                                                                                                                      ttGCCCACACCATGGCATGGCCGAATCGCGTGAACTCTGGCGTGAAGCCGCTCGATTTTTGCAAACTAAGTGCGTTGACATTTGCCGCACCGGa                                                                                                                                                                                                         >  2:560027/1‑94 (MQ=255)                                                                                                                                                                                                                                          ccACACCATGGCATGGCCGAATCGCGTGAACTCTGGCGTGAAGCCGCTCGATTTTTGCAAACTAATTGCGTTGACATTTGCCGCACCGGATTAt                                                                                                                                                                                                     <  1:560039/94‑1 (MQ=255)                                                                                                                                                                                                                                            aaaacagggaaaggcCGAATCGCGCGAAGTTTCGCGTGGAGCCGCTCTATTTTTGCAAACTAAGTGCTTTGACATTTGCCGAACCGGATTATGATCGTTATCCATGCCTGAAACTGGCGATGGAGGCGTTCGAACAAGGCCAGGCAGCGACGACAGCATTGAATGCCGCAAACGAAATCACCGTTGCTGCTTTTCTTGCGCAACAAATCCGCTTTACGGATATCGCTGAGTTGAATTTATCCGTACTGGAAAAAATGGATATGCGCGAACcaca               <  2:350846/262‑1 (MQ=255)                                                                                                                                                                                                                                                   ggcatggcCGAATCGCGTGAACTCTGGCGTGAAGCCGCTCGATTTTTGCAAACTAAGTGCGTTGACGTTTGCCGCCCCGGATTATGATCGTTATCCATGCCTGAAACTGGCGATGGAGGCGTTCGAACAAGGCCAGGCAGCGACGACAGCATTGAATGCCGCAAACGAAATCACCGTTGCTGCTATGCGTGCGCAACAAATCCGCTTTACGGATAACGCCTCGTTTAATTAATCCGACATGGAAAAAATGGATAAGTGCAAACCACAAtgatttg       >  2:168149/1‑270 (MQ=255)                                                                                                                                                                                                                                                        ggcCGAATCGCGTGAACTCTGGCGTGAAGCCGCTCGATTTTTGCAAACTAAGTGCGTTGACATTTGCCGCACCGGATTATGATCGTTATCCATGCCTGAAACTGGCGATGGAGGCGTTCGAACAAGGCTAGGCAGCGACGACAGCATTGAATGCCGCAAACGAAATCACCGTTGCTGCTTTTCTTGCGCAACAAATCCGCTTTACGGATATCGCTGCGTTGAATTTATCCGTACTGGAAAAAATGGATATGCGCGAACCACAATGTGTGGACGAt  <  1:652846/275‑1 (MQ=255)                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                         GATCAAGCCTGCCGTCATCCGAACTGGTCGATGGGGCGTAAAATTTCTGTCGATTCGGCTACCATGATGAACAAAGGTCTGGAATACATTGAAGCGCGTTGGCTGTTTAACGCCAGCGCCAGCCAGATGGAAGTGCTGATTCACCCGCAGTCAGTGATTCACTCAATGGTGCGCTATCAGGACGGCAGTGTTCTGGCGCAGCTGGGGGAACCGGATATGCGTACGCCAATTGCCCACACCATGGCATGGCCGAATCGCGTGAACTCTGGCGTGAAGCCGCTCGATTTTTGCAAACTAAGTGCGTTGACATTTGCCGCACCGGATTATGATCGTTATCCATGCCTGAAACTGGCGATGGAGGCGTTCGAACAAGGCCAGGCAGCGACGACAGCATTGAATGCCGCAAACGAAATCACCGTTGCTGCTTTTCTTGCGCAACAAATCCGCTTTACGGATATCGCTGCGTTGAATTTATCCGTACTGGAAAAAATGGATATGCGCGAACCACAATGTGTGGACGAT  >  CP009273/190617‑191138

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.