| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 264675 | 50 (1.250) | 7 (0.180) | 4/294 | NT | 15.1% | intergenic (‑4/+325) | ykfA/perR | CP4‑6 prophage; putative GTP‑binding protein/CP4‑6 prophage; putative DNA‑binding transcriptional regulator |
| ? | CP009273 | = 264741 | 31 (0.810) | intergenic (‑70/+259) | ykfA/perR | CP4‑6 prophage; putative GTP‑binding protein/CP4‑6 prophage; putative DNA‑binding transcriptional regulator | |||||
AGTGGCTCACGTGTACAGGCCGCCACATCGCTGACCGGTGATATATCTCCGGCAAACAGGGCATTGCACAGACTGCTCTTCCCAACACCGGTTTTACCCATAATGCCGATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/264448‑264675‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcatcactCTGAACATACGCAATTAACGGCGGAATCTCACGATTCTACCGTTTTTTATTATTTTTCAGAGGAGTAGTGATGAATAATTCTGAAGGTTTGAAGTCGTTTCAGCAATCGCTTGCTGATCTGCCGCAATGGGTATCAGAGCGGCTTCTGCAGCAAATTAACCAGTTAACTAACTACGAGCCAGTGATCGGCATTATGGGTAAAACCGGTGTTGGGAAGAGCAGTCTGTGCAATGCCCTGTTTGCCGGAGATATATCACCGGTCAGCGATGTG < CP009273/264741‑264471 AGTGGCTCACGTTTACAGGACGCCACATCGCTGACCGGTGATATATCTCCGGCAAACAGGGCATTGCACAGACTGCTCTTCCCAACACCGGTTTTACCCATAATGCCGATCACTGGCTCGTACTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTCTGAACATACGCAATTAACGGCGGAATCTCACGATTCTACCGTTTTT < 1:645535/275‑1 CGGTTTTACCCATAATGCCGATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTCTGAACATACGCAATTAACGGCGGAATCTCACGATTCTACCGT > 2:129405/1‑183 TTTACCCATAATGCCGATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTCTGAACATACGCAATTAACGGCGGAATCTCACGATTCTACCGTTTTT < 1:129406/183‑1 TGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTCTGAACATACGCAATTAACGGCGTAATCTCACGATTCTACCGT > 2:5592/1‑127 GAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTCTGAACATACGCAATTAACGGCGGAATCTCACGATTCTACCGTTTTT < 1:5592/127‑1 AAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCAT < 2:578987/75‑1 AAACCTTCAGAATTATTCATCACTCTGAACATACGCAATTAACGGCGGAATCTCACGATTCTACCGT > 2:506087/1‑67 CTTCAGAATTATTCATCACTCTGAACATACGCAATTAACGGCGCACTCTCAGGATTCTACCGTTTTT < 1:506096/67‑1 CATCACTCTGAACATACGCAATTAACGGCGGAATCTCACGATTCTACCGTTTTTTATTATTTTTCAGAGGAGTAGTGATGAATAATTCTGAAGGTTTGAAGTCGTTTCAGCAATCG > 2:192104/1‑116 ATCACTCTGAACATACGCAATTAACGGCGGAATCTCACGATTCTACCGTTTTTTATTATTTTTCAGAGGAGTAGTGATGAATAATTCTGAAGGTTTGAAGTCGTTTCAGCAATCGCTTGCTGATCTGCCGCAATGGGTATCAGAGCGGCTTCTGCAGCAAATTAACCAGTTAACTAACTACGAGCCAGTGATCGGCATTATGGGTAAAACCGGTGTTGGGAAGAGCAGTC < 2:267770/230‑1 TCACTCTGAACATACGCAATTAACGGCGGAATCTCACGATTCTACCGTTTTTTCTTATTTTTCAGAGGAGTAGTGATGAATAATTCTGAAGGTTTGAAGTCGTTTCAGCAATCGCTTGCTGATCTGCCGCAATGGGTATCAGAGCGGCTTCTGCAGCAAATTAACCAGTTAACTAACTACGAGCCAGTGATCGGCATTATGGGTAAAACAGGTGTTGGGAAGAGCAGTCTGTGCAATGCCCTGTTTGCCGGAGATATAACACCGGTCAGCGATGT > 1:370987/1‑275 TCACTCTGAACATACGCAATTAACGGCGGAATCTCACGATTCTACCGTTTTTTATTATTTTTCAGAGGAGTAGTGATGAATAATTCTGAAGGTTTGAAGTCGTTTCAGCAATCGCTTGCTGATCTGCCGCAATGGGTATCAGAGCGGCTTCTGCAGCAAATTAACCAGTTAACTAACTACGAGCCAGTGATCGGCATTATGGGTAAAACCGGTGTTGGGAAGAGCAGTCTGTGCAATGCCCTGTTTGCCGGAGATATATCACCGGTCAGCGATGT > 1:589681/1‑275 TCACTCTGAACATACGCAATTAACGGCGGAATCTCACGATTCTACCGTTTTTTATTATTTTTCAGAGGAGTAGTGATGAATAATTCTGAAGGTTTGAAGTCGTTTCAGCAATCGCTTGCTGATCTGCCGCAATGGGTATCAGAGCGGCTTCTGCAGCAAATTAACCAGTTAACTAACTACGAGCCAGTGATCGGCATTATGGGTAAAACCGGTGTTGGGAAGAGCAGTCTGTGCAATGCCCTGTTTGCCGGAGATATATCACCGGTCAGCGA > 1:188578/1‑272 TCACTCTGAACATACGCAATTAACGGCGGAATCTCACGATTCTACCGTTTTTTATTATTTTTCAGAGGAGTAGTGATGAATAATTCTGAAGGTTTGAAGTCGTTTCAGCAATCGCTTGCTGATCTGC > 2:337992/1‑127 TCACTCTGAACATACGCAATTAACGGCGGAATCTCACGATTCTACCGTTTTTTATTATTTTTCAGAGGA > 1:587120/1‑69 TCACTCTGAACATACGCAATTAACGGCGGAATCTCACGATTCTACCGTTTTTTATTATTTTTC > 1:674948/1‑63 TCACTCTGAACATACGCAATTAACGGCGGAATCTCACGATTCTACCGTTTTTTATTATTTTT > 1:15688/1‑62 TCACTCGGAACATACGCAATTAACGGCGGAATCTCACGATTCTACCGTTTTTTATTATTTTTCAGAGGAGTAGTGATGAATAATTCTGAAGGTT > 1:529384/1‑94 agCTCTGAACATACGAAATTAACGGCGGAATCTCACGATTTTACTGTTTTTTATTATTTTTCAGAGGAGTAGTGATGAATAATTCTGAAGGTTTGAAGTCGTTTCAGCAATCGCTTGCTGATCTGCCGCAATGGGTATCAGAGCGGCTTCTGCAGCAAATTAACCAGTTAACTAACTACGAGCCAGTGATCGGCATTATGGGTAAAACCGGTGTTGGGAAGAGCAGTCTGTGCAATGCCCTGTTTGCCGGAGATATATCACCGGTCAGCGATGTG < 2:188576/273‑1 CACTCTGAACATACGCAATTAACGGCGGAATCTCACGATTCTACCGTTTTTTATTATTTTTCAGAGGAGTAGTGATGAATAATTCTGAAGGTTTGAAGTCGTTTCAGCAATCGCTTGCTGATCTGCCGCAATGGGTATCAGAGCGGCTTCTGCAGCAAATTAACCAGTTAACTA > 1:696750/1‑174 CACTCTGAACATACGCAATTAACGGCGGAATCTCACGATTCTACCGTTTTTTATTATTTTTCAGAGGAGTAGTGATGAATAATTCTGAAGGTTTGAAGTCGTTTCAGCAATCGCTTGCTGATCTGCCGCAATGGGTATCAGAGCGGCTTCTGCAGCAAATTAA > 1:228883/1‑163 ACTCTGAACATACGCAATTAACGGCGGAATCTCACGATTCTACCGTTTTTTATTATTTTTCAGAGGAGTAGTGATGAATAATTCTGAAGGTTTGAAGTCGTTTCAGCAATCGCTTG < 1:192106/116‑1 CTCTGAACATACGCAATTAACGGCGGAATCTCACGATTCTACCGTTTTTTATTATTTTTCAGAGGAGTAGTGATGAATAATTCTGAAGGTTTGAAGTCGTTTCAGCAATCGCTTGCTGATCTGCCGCAATGGGTATCAGAGCGGCTTCTGCAGCAAATTAACCAGTTAACTAACTACGAGCCAGTGATCGGCATTATGGGTAAAACCGGTGTTGGGAAGAGCAGTCTGTGCAATGCCCT > 1:644734/1‑239 TCTGAACATACGCAATTAACGGCGGAATCTCACGATTCTACCGTTTTTTATTATTTTTCAGAGGAGTAGTGATGAATAATTCTGAAGGTTTGAAGTCGTTTCAGCAATCGCTTGCTGATCTGCCGCA < 1:337998/127‑1 TCTGAACATACGCAATTAACGGCGGAATCTCACGATTCTACCGTTTTTTATTATTTTTCAGAGGAGTAGTGATGAATAATTCTGAAGGTTTGAA < 2:529375/94‑1 TCTGAACATACGCAATTAACGGCGGAATCTCACGATTCTACCGTTTTTTATTATTTTTCAGAGGAGTAG < 2:587107/69‑1 TCTGAACATACGCAATTAACGGCGGAATCTCACGATTCTACCGTTTTTTATTATTTTTCAGAG < 2:674934/63‑1 TCTGAACATACGCAATTAACGGCGGAATCTCACGATTCTACCGTTTTTTATTATTTTTCAGA < 2:15688/62‑1 AGTGGCTCACGTGTACAGGCCGCCACATCGCTGACCGGTGATATATCTCCGGCAAACAGGGCATTGCACAGACTGCTCTTCCCAACACCGGTTTTACCCATAATGCCGATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/264448‑264675‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcatcactCTGAACATACGCAATTAACGGCGGAATCTCACGATTCTACCGTTTTTTATTATTTTTCAGAGGAGTAGTGATGAATAATTCTGAAGGTTTGAAGTCGTTTCAGCAATCGCTTGCTGATCTGCCGCAATGGGTATCAGAGCGGCTTCTGCAGCAAATTAACCAGTTAACTAACTACGAGCCAGTGATCGGCATTATGGGTAAAACCGGTGTTGGGAAGAGCAGTCTGTGCAATGCCCTGTTTGCCGGAGATATATCACCGGTCAGCGATGTG < CP009273/264741‑264471 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |